Sequence of DPV Maize streak virus

Maize streak virus isolate MSV-A_ZA_Har_M11-1989, complete genome.

ACC No: HQ693413

Dated: 2011-09-04 | Length: 2690 | CRC: 763689188

                
ID   HQ693413; SV 1; circular; genomic DNA; STD; VRL; 2690 BP.
XX
AC   HQ693413;
XX
DT   05-AUG-2011 (Rel. 109, Created)
DT   04-SEP-2011 (Rel. 110, Last updated, Version 3)
XX
DE   Maize streak virus isolate MSV-A_ZA_Har_M11-1989, complete genome.
XX
KW   .
XX
OS   Maize streak virus
OC   Viruses; ssDNA viruses; Geminiviridae; Mastrevirus.
XX
RN   [1]
RP   1-2690
RX   DOI; 10.1128/JVI.00640-11.
RX   PUBMED; 21715477.
RA   Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P.,
RA   Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K.,
RA   Lakoutene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A.,
RA   Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B.,
RA   Ramusi M., Windram O.P., Syed R., Lett J.M., Briddon R.W., Markham P.G.,
RA   Rybicki E.P., Varsani A.;
RT   "Reconstructing the history of maize streak virus strain a dispersal to
RT   reveal diversification hot spots and its origin in southern Africa";
RL   J. Virol. 85(18):9623-9636(2011).
XX
RN   [2]
RP   1-2690
RA   Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P.,
RA   Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K.,
RA   Kakouttene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A.,
RA   Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B.,
RA   Ramusi M., Windram O.P., Syed R., Lett J.-M., Peterschmitt M.,
RA   Briddon R.W., Markham P.G., Rybicki E.P., Varsani A.;
RT   ;
RL   Submitted (08-DEC-2010) to the INSDC.
RL   Electron Microscope Unit, University of Cape Town, Private Bag, Rondebosch,
RL   Cape Town, WP 7701, South Africa
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2690
FT                   /organism="Maize streak virus"
FT                   /host="maize"
FT                   /isolate="MSV-A_ZA_Har_M11-1989"
FT                   /mol_type="genomic DNA"
FT                   /country="South Africa"
FT                   /lat_lon="25.75 S 27.79 E"
FT                   /collection_date="1989"
FT                   /db_xref="taxon:10821"
FT   CDS             1. .306
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /protein_id="AEL32209.1"
FT                   /translation="MDPQNALYYQPRVPTAAPTSGGVPWSRVGEVAILSFVALICFYLL
FT                   YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG"
FT   CDS             317. .1051
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="AEL32210.1"
FT                   /translation="MSTSKRKRGDDSNWNKRVPKKKPSSAGLKRAGSKADRPSLQIQTL
FT                   QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAVDYHFVADAAACRYSNT
FT                   GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET
FT                   DGRIGSDIPPSNTSWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGDGAIQRGALYMVIAP
FT                   GNGLTFTAHGQTRLYFKSVGNQ"
FT   CDS             complement(1561. .2379)
FT                   /codon_start=1
FT                   /product="RepA"
FT                   /protein_id="AEL32211.1"
FT                   /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK
FT                   YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE
FT                   PLAVFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHATSKQEYLSMIQKELPF
FT                   DWSTKLQYFEYSANKLFPEIQEEFTNPHPPSSPDLLCNESINDWLQPNIFQVSPEAYML
FT                   LQPTCYTLEDAISDLQWMDSVSSHQMKDQESRASTSSAQQEPENLLGPEA"
XX
SQ   Sequence 2690 BP; 690 A; 632 C; 691 G; 677 T; 0 other;

hq693413 Length: 2690  04-SEP-2011  Type: N  Check: 7604  ..

       1  atggatccac agaacgccct gtattatcag ccgcgggtac ccacagcagc
      51  tccgacatcc ggaggagtgc cgtggagtcg cgtaggcgag gtagctattt
     101  tgagctttgt tgctttgatt tgcttttacc tgctttacct ttgggtgctg
     151  agagacctta tcttagttct gaaggctcga caaggcagat ccacggagga
     201  gctgatattt ggtggacaag ctgtggatag gagcaaccct atccctaatc
     251  taccagcacc accaagtcag ggcaatcccg ggccatttgt tccaggcacg
     301  ggataagcaa tcagccatgt ccacgtccaa gaggaagcgg ggagatgatt
     351  cgaattggaa taagcgggtg cctaagaaga agccatcttc agctgggctg
     401  aagagggctg gaagcaaggc cgataggcca tccctccaaa tccagacact
     451  ccagcatgcg gggaccacca tgataacggt cccctctgga ggagtatgtg
     501  acctcatcaa cacctatgcc cgaggatctg acgagggcaa ccgccacacc
     551  agcgagactc tgacgtacaa gatcgccgtc gactaccact tcgttgccga
     601  cgcggctgcc tgccgctact ccaacaccgg aaccggtgta atgtggctgg
     651  tgtatgacac cactcccggc ggacaagctc cgaccccgca aactatattt
     701  gcctaccctg acacgctcaa agcgtggccg gccacatgga aagtgagccg
     751  ggagctgtgt catcgcttcg tggtgaaacg gcgatggttg ttcaacatgg
     801  agaccgacgg tcggattggt tcggatatcc ctccctcgaa tacaagttgg
     851  aagccttgca agcgcaacat ctacttccac aagttcacga gtgggttggg
     901  agtgagaacg cagtggaaga atgtaacgga cggaggagat ggtgccatcc
     951  agagaggagc gctgtacatg gttattgccc ccggcaatgg ccttacattt
    1001  actgcccatg ggcagacccg tctgtacttt aagagtgttg gcaaccagta
    1051  atgaataaaa acgcccgttt tattatatct gatgaatgct gaaagcttac
    1101  attaatatgt cgtgcgatgg cacgaaaaaa cacacgcaat caatacaggg
    1151  gggtagtcgg cgggcggcta agggtggtgc tcggcgggca aaacatcgaa
    1201  aaatcaagat ctatatgaat tacacttcct ccgtaggagg aagcacaggg
    1251  ggagaatacc acttctcccc cggcgacata atgtaaatga tgcagtttgc
    1301  ctcgaaatac tccagctgcc ctggagtcat ttccttcatc caatcttcat
    1351  ccgagttggc gaggattatt gtaggcttag acttcttctg cacctttttc
    1401  ttcttaccat acttggggtt tacaatgaaa tccctctgac agccaactaa
    1451  ctgtttccaa caaggacaga atttaaacgg aatatcatct acgatgttgt
    1501  agattgcgtc ttcgttgtat gaagaccaat caacattatt ttgccagtaa
    1551  ttatgaaccc ctaggcttct ggcccaagta gattttccgg ttcttgttgg
    1601  gccgacgatg tagaggctct gctttcttga tctttcatct gatgactgga
    1651  tacagaatcc atccattgca ggtcagaaat tgcatcctcg agggtataac
    1701  aggtaggttg aaggagcatg taagcttcgg gactaacctg gaagatgtta
    1751  ggctggagcc aatcgttgat tgactcatta caaagtaaat caggtgagga
    1801  gggtggatga ggattggtga actcttcctg aatctcagga aaaagcttat
    1851  ttgcagagta ttcaaaatac tgcaattttg tggaccaatc aaaggggagc
    1901  tctttctgga tcatggagag gtactcttgt ttggaggtag cgtgtgaaat
    1951  aatgtctcgc attatttcat ctttagaagg ctttttttcc tttacctctg
    2001  aatcagattt tcctaggaag ggggacttcc taggaatgaa agtacctctc
    2051  tcaaacacag ccagaggttc cttgagaatg taatccctca ctctgttaac
    2101  tgacttggca ctctgaatat ttgggtgaaa cccatttata tcaaagaacc
    2151  ttgagtcaga tatccttacc ggcttctctg tctgaagcaa tgcatgtaaa
    2201  tgcaaacttc catctttatg tgcctctcgg gcacatagaa tatatttggg
    2251  aatccaacga acgacgagct cccagatcat ctgacaggcg atttcaggat
    2301  tttctggaca ctttggatag gttaggaacg tgtttgcgtt cctgtgtgag
    2351  aactgacggt tggatgagga ggaggccata gccgacgacg gaggttgagg
    2401  ctgagggatg gcagactggg agctccaaac tctatagtat acctgtgcgc
    2451  cttcgaaatc cgccgctccc ttgttttata gtggttgtaa atgggccgga
    2501  ccgggccggc ccagcaggaa aagaaggcgc gcattaatat taccgcgcct
    2551  tcttttcctg cgagggcccg gtagggaccg agcgctttga tttaaagctt
    2601  ggtcctgctt tgtatgattt atctaaagca gcccaatcta aagaaaccgg
    2651  tcccgggcac tataaattgc ctaacaagtg cgattcattc