Sequence of DPV Maize streak virus
Maize streak virus isolate MSV-A_ZM_Lit_Z14_2008, complete genome.
ACC No: HQ693464
Dated: 2011-09-04 | Length: 2689 | CRC: 671518130
ID HQ693464; SV 1; circular; genomic DNA; STD; VRL; 2689 BP. XX AC HQ693464; XX DT 05-AUG-2011 (Rel. 109, Created) DT 04-SEP-2011 (Rel. 110, Last updated, Version 3) XX DE Maize streak virus isolate MSV-A_ZM_Lit_Z14_2008, complete genome. XX KW . XX OS Maize streak virus OC Viruses; ssDNA viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2689 RX DOI; 10.1128/JVI.00640-11. RX PUBMED; 21715477. RA Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P., RA Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K., RA Lakoutene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A., RA Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B., RA Ramusi M., Windram O.P., Syed R., Lett J.M., Briddon R.W., Markham P.G., RA Rybicki E.P., Varsani A.; RT "Reconstructing the history of maize streak virus strain a dispersal to RT reveal diversification hot spots and its origin in southern Africa"; RL J. Virol. 85(18):9623-9636(2011). XX RN [2] RP 1-2689 RA Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P., RA Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K., RA Kakouttene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A., RA Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B., RA Ramusi M., Windram O.P., Syed R., Lett J.-M., Peterschmitt M., RA Briddon R.W., Markham P.G., Rybicki E.P., Varsani A.; RT ; RL Submitted (08-DEC-2010) to the INSDC. RL Electron Microscope Unit, University of Cape Town, Private Bag, Rondebosch, RL Cape Town, WP 7701, South Africa XX FH Key Location/Qualifiers FH FT source 1. .2689 FT /organism="Maize streak virus" FT /host="maize" FT /isolate="MSV-A_ZM_Lit_Z14_2008" FT /mol_type="genomic DNA" FT /country="Zambia" FT /lat_lon="14.8 S 28.05 E" FT /collection_date="2008" FT /db_xref="taxon:10821" FT CDS 1. .306 FT /codon_start=1 FT /product="movement protein" FT /protein_id="AEL32362.1" FT /translation="MDPQNALYYQPRVPTAAPASAGVPWSRVGEVAILSFVALICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSHPIPNLPAPPSQGNPGPFVPGTG" FT CDS 317. .1051 FT /codon_start=1 FT /product="coat protein" FT /protein_id="AEL32363.1" FT /translation="MSTSKRKRGDDSNWSKRVPKKKPSSAGLKRAGSKADRPSLQIQTL FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT CDS complement(1560. .2378) FT /codon_start=1 FT /product="RepA" FT /protein_id="AEL32364.1" FT /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK FT YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE FT PLAMFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHSTSKEEYLSMIQKELPY FT DWSTKLQYFEYSANKLFPEIQEEFTNPHPQSSPDLLCNESINDWLQPNIFQVSPEAYML FT LQPTCYTLEDAISDLQWMDNVSSHQMKDQESRASTSSAQQEQENLLGPEA" XX SQ Sequence 2689 BP; 685 A; 639 C; 694 G; 671 T; 0 other; hq693464 Length: 2689 04-SEP-2011 Type: N Check: 5505 .. 1 atggatccac agaacgccct gtattatcag ccgcgggtac ccacagcagc 51 tccggcatcc gcaggagtgc cgtggagtcg cgtaggcgag gtagctattt 101 tgagctttgt tgcactgatt tgcttttacc tgctttacct ttgggtgctg 151 agagacctta tcttagttct gaaggctcga caaggcagat ccacggagga 201 gctgatattt ggaggacaag ctgtggatag gagccaccct atccctaatc 251 taccagcacc accaagtcaa ggcaatcccg ggccatttgt tccgggcacg 301 ggataagcat tcagccatgt ccacgtccaa gaggaagcgg ggagatgatt 351 cgaattggag taagcgggtg cctaagaaga agccctcttc agctggtctg 401 aagagggcgg gaagcaaggc cgataggcca tccctccaaa tccagacact 451 ccagcatgct gggaccacca tgataacggt cccatccgga ggagtatgtg 501 atctcatcaa cacctatgcc cgaggatctg acgagggcaa ccgccacacc 551 agcgagactc tcacgtacaa gatcgccatc gactaccact tcgttgccga 601 cgcggcagcc tgccgctact ccaacaccgg aaccggtgta atgtggctgg 651 tgtatgacac cactcccggc ggacaagctc cgaccccgca aactatattt 701 gcctaccctg acacgctgaa agcgtggccg gccacatgga aggtgagccg 751 ggagctgtgt catcgcttcg tggtgaaacg gcgatggttg ttcaacatgg 801 agaccgacgg gcggattggt tcggacattc ctccctcgaa tgcaagttgg 851 aagccttgca agcgcaacat ctacttccac aagttcacga gcgggttggg 901 agtgagaacg cagtggaaga atgtaacgga cggaggagtt ggtgccatcc 951 agagaggagc gttgtacatg gtcattgccc ccggcaatgg tcttacattt 1001 actgcccatg ggcagacccg tctgtacttt aagagtgttg gcaaccagta 1051 atgaataaaa actcccgttt tattatatct gatgaatgct gaaagcttac 1101 attaatatgt cgtgcgatgg cacgaaaaaa cacacgcaat caatacaggg 1151 gggtagtagg cgggcggcta agggtggtgc tcggcgggca gaacatcgaa 1201 aaatcaagat ctatctgaat gtactgcctc cgtaggaggc agctcagggg 1251 gagaatacca cttctccccc ggcgacataa tgtaaatgac gcagtttgcc 1301 tcgaaatact ccagctgccc tggagtcatt tccttcatcc aatattcatc 1351 cgagttggcg aggattattg taggcttaga cttcttctgc accttcttct 1401 tcttaccata cttggggttt acaatgaaat ccctctgaca gccaactaac 1451 tgtttccaac aaggacagaa tttaaacggg atatcatcta cgatgttgta 1501 gattgcgtct tcgttgtatg aagaccaatc aacattattt tgccagtaat 1551 tatgaacccc taggcttctg gcccaagtag attttcctgt tcttgttggg 1601 ccgacgatgt agaggctctg ctttcttgat ccttcatctg atgactggat 1651 acattatcca tccattggag gtcagaaatt gcatcctcga gagtataaca 1701 ggtaggttga aggagcatgt aagcttcggg actaacctgg aagatgttag 1751 gctggagcca atcattgatt gactcattac aaagtaaatc aggtgaggat 1801 tgtggatgag gattggtgaa ctcttcctga atctcaggaa aaagcttatt 1851 tgcagagtat tcaaaatact gcaattttgt ggaccaatca tagggaagct 1901 ctttctggat catggagagg tactcttctt tggaagtaga gtgtgaaata 1951 atgtctcgca ttatttcatc tttggaaggc tttttttcct taacttctga 2001 atcagatttt cctaggaagg gggacttcct aggaatgaaa gtacctctct 2051 caaacatagc cagaggttcc ttgaggatgt aatccctcac cctgtttact 2101 gacttggcac tctgaatgtt tgggtgaaac ccattaatat caaagaacct 2151 tgagtccgat attcttaccg gcttctctgt ttgcagcaat gcatgtaaat 2201 gcaaacttcc atctttatgt gcctctcggg cacatagaat gtacttggga 2251 atccaacgaa caacgagctc ccagatcatc tgacaggcga tttcaggatt 2301 ttctggacac tttggatagg ttaggaacgt gttagcgttc cggtgggaga 2351 actgacggtt ggatgaggag gaggccatag ccgacgacgg aggatgaggc 2401 tgagggatgg cagaatggga gctccaaact ctatagcata cctgtgcgcc 2451 ttcgaaatcc gccgctccct tgtcttatag tggttgtaaa tgggccggac 2501 cgggccggcc cagcaggaaa agaaggcgcg cactaatatt accgcgcctt 2551 cttttcctgc gagggcccgg tagggcccga gcgatttgat gtaaagcctg 2601 gtcctgcttt gtatgattta tctaaagcag cccaatctaa agaaaccggt 2651 cccgggcact ataaattgcc taacaagtgc gattcattc