Sequence of DPV Rice black streaked dwarf virus
Rice black streaked dwarf virus isolate JSpizhou5 capsid protein gene, complete cds.
ACC No: HQ916891
Dated: 2011-07-26 | Length: 1677 | CRC: 849721022
ID HQ916891; SV 1; linear; genomic RNA; STD; VRL; 1677 BP.
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AC HQ916891;
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DT 26-JUL-2011 (Rel. 109, Created)
DT 26-JUL-2011 (Rel. 109, Last updated, Version 1)
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DE Rice black streaked dwarf virus isolate JSpizhou5 capsid protein gene,
DE complete cds.
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KW .
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OS Rice black streaked dwarf virus
OC Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Fijivirus;
OC Fijivirus group 2.
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RN [1]
RP 1-1677
RA Gao R.Z., Cheng Z.B., Zhou Y.J.;
RT ;
RL Submitted (23-JAN-2011) to the INSDC.
RL Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences,
RL No. 50.Zhongling Road, Nanjing, Jiangsu 210014, China
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FH Key Location/Qualifiers
FH
FT source 1. .1677
FT /organism="Rice black streaked dwarf virus"
FT /segment="10"
FT /host="rice"
FT /isolate="JSpizhou5"
FT /mol_type="genomic RNA"
FT /country="China"
FT /collection_date="Aug-2009"
FT /db_xref="taxon:10990"
FT CDS 1. .1677
FT /codon_start=1
FT /product="capsid protein"
FT /protein_id="AEK67401.1"
FT /translation="MADIRLDIAPDLIHNGVPQRLSDTIILNNRPTITLLSHFNNLFHE
FT LNIVKSPHVASSQTTVNLYIRKHLLTRLHDRLQTVETSTLPNITQLKDHIRSFFQNEHQ
FT PIFQTLTNNDLSEEFVGVTTFGLSLFATSKLDAEQIERVQIETLTEGNITLKPFSADGL
FT EVILDDSYIGIVGKIPGLEVHKLLDKCCREVPAQMGILTDEVKLLMRTGKLRIDGGYDF
FT NCPASTTDVTHYGGYDQFSRQMFERLNLFYNISLSIIPVSALKTVHLFEKELSVLDADK
FT SLLEQTWSAVASFVETWQVKSKVKADDPDEYELTSLSTLRTNYDGTSASSPFTDKKFID
FT WYIKTFSKTEKGSSLRRNELEEKSATSTSTTVKKVKIHFSVQYFDEFKVNGHEKSVVVQ
FT THKGEMTLDYYRKIGEVLSAIWKRGKSLAVPCFDYIKLGVEKAFHLAPVILKKYNLTID
FT DIINFIDKGPSYLAKLDKIDDWSLISKLIITSVLPNIIQAVYKTDPSNNVMNSVIISRA
FT NNLLKSDRDRLLKKALSANVSSSNTSSHEHVQKIVLNKVTR"
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SQ Sequence 1677 BP; 549 A; 300 C; 295 G; 533 T; 0 other;
hq916891 Length: 1677 26-JUL-2011 Type: N Check: 3769 ..
1 atggctgaca taagactcga catagcgccc gatcttatcc ataatggtgt
51 accccagaga ctttccgata caataatttt aaacaaccga ccaacaatca
101 ctctgctatc tcatttcaac aatctatttc atgaactaaa cattgtcaaa
151 tcgccccacg ttgcatcttc ccaaactact gttaatttgt acattcgtaa
201 gcatttgttg acccgacttc atgatagact acaaaccgta gaaactagca
251 ctttgcccaa cattacacaa cttaaagacc atattcgtag cttttttcaa
301 aatgaacacc aacctatttt tcagacccta acgaacaacg acctaagtga
351 agaatttgta ggtgtgacta cttttggact aagcttgttt gctacctcca
401 aacttgacgc tgaacaaata gaacgagtac aaattgagac cctaactgaa
451 ggaaacatta ctttgaaacc cttttctgct gatggtttag aagtcattct
501 cgatgatagt tatattggta tagttggtaa aattccaggt ttagaagttc
551 ataaattgct agataaatgt tgtcgtgaag ttcctgctca aatgggaata
601 cttactgatg aagttaaact tttgatgcgt actggtaaat taagaattga
651 tggtggttac gattttaatt gtcctgcaag cactactgat gttacacatt
701 atggtggtta tgaccaattt tcacgtcaaa tgttcgaacg tttgaatcta
751 ttttataaca ttagtcttag cataattccc gtttcagctt tgaaaacagt
801 tcatttattt gaaaaagaac taagtgtttt agatgcagat aaatctttac
851 ttgaacaaac ttggagcgcg gtagcgtcat ttgttgaaac ttggcaggtt
901 aaatctaaag ttaaagccga tgatccagat gaatatgaat tgaccagttt
951 gtccactttg cgcactaatt acgatggcac ctctgcttct agtcctttta
1001 cagataagaa attcattgat tggtacatta agactttttc taagactgag
1051 aaaggatcgt cgttgcgtcg aaacgaatta gaagagaaaa gtgcaactag
1101 tacttcaact acagtaaaga aggttaaaat tcatttctcc gttcaatatt
1151 ttgatgaatt taaagttaat ggacatgaaa aaagcgttgt agttcaaact
1201 cataaaggcg aaatgacgtt agattattat cgtaaaattg gcgaagtgtt
1251 aagtgctatt tggaaacgtg gtaaatcttt ggctgtacct tgttttgatt
1301 acattaagct tggcgttgag aaagcatttc atttagcacc cgtaattctg
1351 aagaagtata atttgactat tgatgacatt atcaacttta tcgataaagg
1401 accttcttat ttagctaaat tagacaagat tgatgattgg tctttaattt
1451 caaagcttat cattaccagc gttttaccta atatcattca agctgtttac
1501 aaaaccgatc caagtaataa tgttatgaac tcagtaatca tcagtagagc
1551 gaacaatttg ttgaaatctg atagggacag gctgttaaag aaggcacttt
1601 ccgccaacgt ttcttcttcc aacacatcta gtcatgaaca tgtacagaag
1651 atagtactaa acaaagtgac aagatga