Sequence of DPV Rice black streaked dwarf virus
Rice black streaked dwarf virus isolate JXnanchang3 capsid protein gene, complete cds.
ACC No: HQ916899
Dated: 2011-07-26 | Length: 1677 | CRC: 1093736981
ID HQ916899; SV 1; linear; genomic RNA; STD; VRL; 1677 BP.
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AC HQ916899;
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DT 26-JUL-2011 (Rel. 109, Created)
DT 26-JUL-2011 (Rel. 109, Last updated, Version 1)
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DE Rice black streaked dwarf virus isolate JXnanchang3 capsid protein gene,
DE complete cds.
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KW .
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OS Rice black streaked dwarf virus
OC Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Fijivirus;
OC Fijivirus group 2.
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RN [1]
RP 1-1677
RA Gao R.Z., Cheng Z.B., Zhou Y.J.;
RT ;
RL Submitted (23-JAN-2011) to the INSDC.
RL Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences,
RL No. 50.Zhongling Road, Nanjing, Jiangsu 210014, China
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FH Key Location/Qualifiers
FH
FT source 1. .1677
FT /organism="Rice black streaked dwarf virus"
FT /segment="10"
FT /host="rice"
FT /isolate="JXnanchang3"
FT /mol_type="genomic RNA"
FT /country="China"
FT /collection_date="Aug-2009"
FT /db_xref="taxon:10990"
FT CDS 1. .1677
FT /codon_start=1
FT /product="capsid protein"
FT /protein_id="AEK67409.1"
FT /translation="MADIRLDIAPDLIHNGVPQRLSDTIILNNRPTITLLSHFNNLFHE
FT LNIVKAPHVASSQTTVNLYIRKHLLTRLHDRLQTVETSTLPNITQLKDHIRSFFQNEHQ
FT PIFQTLTNNDLSEEFVGVTTFGLSLFATSKLDAEQIERVQIETLTEGNITLKPFSADGL
FT EVILDDSYIGIVGKIPGLEVHKLLDKCCREVPAQMGILTDEVKLLMRTGKLRIDGGYDF
FT NCPASTTDVTHYGGYDQFSRQMFERLNLFYNISLSIIPVSALKTVHLFEKELSVLDADK
FT SLLEQTWSAVASFVETWQVKSKVKADDPDEYELTSLSTLRTNYDGTSTSSPFTDKKFID
FT WYIKTFSKTEKGSSLRRNELEEKSATNTSTTVKKVKIHFSVQYFDEFKVNGHEKSIVVQ
FT THKGEMTLDYYRKIGEVLSAIWKRGKSLAVPCFDYIKLGVEKAFHLAPVIMKKYNLTID
FT DIINFIDKGPSYLAKLDKIDDWSLISKLIITSVLPNIIQAVYKTDPSNNVMNSVIISRA
FT NNLLKSDRDRLLKKALSANVSSSNTSSHEHTQKIVLNKVTR"
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SQ Sequence 1677 BP; 556 A; 307 C; 290 G; 524 T; 0 other;
hq916899 Length: 1677 26-JUL-2011 Type: N Check: 281 ..
1 atggctgaca taagactcga catagcgccc gatcttatcc ataatggtgt
51 accccagaga ctttccgata caataatttt aaacaaccga ccaacaatca
101 ctctgttatc tcatttcaac aatctatttc atgaattaaa cattgtcaaa
151 gcgccccacg ttgcatcttc ccaaactacc gttaatttgt acattcgcaa
201 acatttgttg acccgacttc atgatagact acaaaccgta gaaactagca
251 ctttacccaa catcacgcaa cttaaagatc atattcgcag tttctttcaa
301 aatgaacacc aacctatttt tcagacccta acgaacaacg acctgagcga
351 agaatttgta ggtgtgacta cttttggact aagcttattt gctacctcca
401 aacttgatgc tgaacaaata gaacgtgtgc aaattgagac cttaactgaa
451 ggaaacatta cgttgaagcc cttttccgct gatggtttag aagtcattct
501 cgatgatagt tatattggta tagttggcaa aattccaggt ttagaagttc
551 ataaattgtt agataaatgc tgtcgtgaag ttcctgctca aatgggaata
601 cttactgatg aagttaaact tttgatgcgt actggtaaat taagaattga
651 tggtggttac gatttcaatt gtcctgcaag cactacagat gttacacact
701 atggtggtta tgaccaattt tcgcgtcaaa tgttcgaacg tttgaatctc
751 ttttataata ttagtcttag cataattccc gtttcagctt taaaaacagt
801 tcatttattc gaaaaagaat taagtgtttt ggatgcagat aaatctttac
851 tcgaacagac ttggagcgca gtagcgtcat ttgttgaaac ttggcaagtt
901 aaatctaaag ttaaagctga tgatcccgat gaatacgaac tgaccagttt
951 gtccactttg cgtactaatt acgatggtac ttctacttct agtcctttta
1001 cagataagaa attcattgac tggtatatta agactttttc taagactgaa
1051 aaaggatcgt ctttacgtag aaatgaatta gaagagaaaa gtgccactaa
1101 tacttcaacc acagtaaaga aggttaaaat tcatttctct gttcaatatt
1151 ttgacgaatt taaagttaat ggacatgaaa aaagcattgt agttcaaact
1201 cataaaggtg aaatgacact agattattac cgtaaaattg gcgaagtatt
1251 aagtgcgatt tggaaacgcg gtaaatcttt ggctgtacct tgttttgatt
1301 acattaaact tggtgttgaa aaagcatttc atttggcacc cgtaattatg
1351 aagaagtata acttgacgat cgacgacatt atcaacttca ttgataaagg
1401 accttcctat ttggctaagt tagacaaaat tgatgattgg tctctaattt
1451 caaagcttat tattaccagt gttttaccta acattattca agctgtttat
1501 aaaaccgatc caagtaataa tgttatgaac tcagtaatta tcagtagagc
1551 gaacaacttg ttgaaatctg atagggacag actattaaag aaggcacttt
1601 ccgccaacgt ttcttcctcc aatacatcta gtcatgagca tacacagaag
1651 atagtactaa acaaagtgac aagatga