Sequence of DPV Rice black streaked dwarf virus

Rice black streaked dwarf virus isolate SDjining10 capsid protein gene, complete cds.

ACC No: HQ916903

Dated: 2011-07-26 | Length: 1677 | CRC: 256327414

                
ID   HQ916903; SV 1; linear; genomic RNA; STD; VRL; 1677 BP.
XX
AC   HQ916903;
XX
DT   26-JUL-2011 (Rel. 109, Created)
DT   26-JUL-2011 (Rel. 109, Last updated, Version 1)
XX
DE   Rice black streaked dwarf virus isolate SDjining10 capsid protein gene,
DE   complete cds.
XX
KW   .
XX
OS   Rice black streaked dwarf virus
OC   Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Fijivirus;
OC   Fijivirus group 2.
XX
RN   [1]
RP   1-1677
RA   Gao R.Z., Cheng Z.B., Zhou Y.J.;
RT   ;
RL   Submitted (23-JAN-2011) to the INSDC.
RL   Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences,
RL   No. 50.Zhongling Road, Nanjing, Jiangsu 210014, China
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1677
FT                   /organism="Rice black streaked dwarf virus"
FT                   /segment="10"
FT                   /host="rice"
FT                   /isolate="SDjining10"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /collection_date="Aug-2009"
FT                   /db_xref="taxon:10990"
FT   CDS             1. .1677
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /protein_id="AEK67413.1"
FT                   /translation="MADIRLDIAPDLIHNGVPQRLSDTIILNNRPTITLLSHFNNLFHE
FT                   LNIVKSPHVASSQTTVNLYIRKHLLTRLHDRLQTVETSTLPNITQLKDHIRSFFQNEHQ
FT                   PIFQTLTNNDLSEEFVGVTTFGLSLFATSKLDAEQIERVQIETLTEGNITLKPFSADGL
FT                   EVILDDSYIGIVGKIPGLEVHKLLDKCCREVPAQMGILTDEVKLLMRTGKLRIDGGYDF
FT                   NCPASTTDVTHYGGYDQFSRQMFERLNLFYNISLSIIPVSALKTVHLFEKELSVLDADK
FT                   SLLEQTWSAVASFVETWQIKSKVKADDPDEYELTSLSTLRTNYDGTSASSPFTDKKFID
FT                   WYIKTFSKTEKGSSLRRNELEEKSATSTPTTVKKVKIHFSVQYFDEFKVNGHEKSVVVQ
FT                   THKGEMTLDYYRKIGEVLSAIWKRGKSLAVPCFDYIKLGVEKAFHLAPVILKKYNLTID
FT                   DIINFIDKGPSYLAKLDKIDDWSLISKLIITSVLPNIIQAVYKTDPSNNVMNSVIISRA
FT                   NNLLKSDRDRLLKKALSANVSSSNTSSHEHVQKIVLNKVTR"
XX
SQ   Sequence 1677 BP; 552 A; 306 C; 294 G; 525 T; 0 other;

hq916903 Length: 1677  26-JUL-2011  Type: N  Check: 7815  ..

       1  atggctgaca taagactcga catagcgccc gatcttatcc ataatggtgt
      51  accccagaga ctttccgata caataatttt aaacaaccga ccaacaatca
     101  ctctgctatc tcatttcaac aatctatttc atgaattaaa cattgtcaaa
     151  tcaccccacg ttgcatcttc ccaaactacc gttaatttgt atattcgtaa
     201  gcatttgctg acccgacttc atgatagact gcaaactgta gaaactagca
     251  ctttacccaa catcacgcaa cttaaagacc atattcgtag cttctttcaa
     301  aatgaacacc aacctatttt tcagactcta acgaacaacg acctaagtga
     351  agaatttgta ggtgtgacta cttttggact aagcttattt gctacctcca
     401  aacttgatgc tgaacaaata gaacgtgtac aaattgagac cctaactgaa
     451  ggaaacatta ctttaaagcc cttttccgct gatggtttag aagtcattct
     501  cgatgatagt tatattggta tagttggtaa aattccaggt ttagaagttc
     551  ataaattgct agataaatgc tgtcgtgaag ttcctgctca aatgggaata
     601  cttactgatg aagttaaact tttgatgcgt actggtaaat taagaattga
     651  tggtggttac gattttaatt gtcctgcaag cactacggat gttacacatt
     701  acggtggtta tgaccaattt tcacgtcaaa tgttcgaacg tttgaatcta
     751  ttttataata ttagccttag tataatcccc gtttcagctt tgaaaacagt
     801  tcatttattt gaaaaagaac taagtgtttt ggatgcagat aaatctttac
     851  tcgaacaaac ttggagcgca gtagcgtcat ttgttgaaac ttggcagatt
     901  aaatctaaag ttaaagccga tgatccagat gaatatgaat tgaccagttt
     951  gtccacgttg cgtactaatt acgatggcac ctctgcttct agtcctttta
    1001  cagataagaa attcattgat tggtacatta agactttttc taaaactgag
    1051  aaaggatcgt cgttgcgtcg aaacgaatta gaagagaaaa gtgccactag
    1101  tactccaact acagtaaaaa aagttaaaat tcatttctcc gttcaatatt
    1151  ttgatgaatt taaagttaat ggacatgaaa aaagcgttgt agttcaaact
    1201  cataaaggcg aaatgacgtt agattattat cgtaaaattg gcgaagtgtt
    1251  aagtgctatt tggaaacgtg ggaaatcttt ggctgtacct tgttttgatt
    1301  acattaagct tggcgttgag aaagcgtttc atttagcacc cgtaattctg
    1351  aagaagtata acttgactat tgatgatatt atcaacttca ttgacaaagg
    1401  accttcttat ttagctaaat tagacaagat tgatgattgg tctctaattt
    1451  caaagctaat cattaccagc gttttaccta acatcattca agctgtttac
    1501  aaaaccgatc caagtaacaa tgttatgaac tcagtgatta tcagtagagc
    1551  gaacaatttg ttgaaatctg atagggacag gctattaaag aaggcacttt
    1601  ccgccaacgt ttcttcttcc aacacatcta gtcatgaaca tgtacagaag
    1651  atagtattaa acaaagtgac aagatga