Sequence of DPV Rice black streaked dwarf virus
Rice black streaked dwarf virus isolate SDjining10 capsid protein gene, complete cds.
ACC No: HQ916903
Dated: 2011-07-26 | Length: 1677 | CRC: 256327414
ID HQ916903; SV 1; linear; genomic RNA; STD; VRL; 1677 BP. XX AC HQ916903; XX DT 26-JUL-2011 (Rel. 109, Created) DT 26-JUL-2011 (Rel. 109, Last updated, Version 1) XX DE Rice black streaked dwarf virus isolate SDjining10 capsid protein gene, DE complete cds. XX KW . XX OS Rice black streaked dwarf virus OC Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Fijivirus; OC Fijivirus group 2. XX RN [1] RP 1-1677 RA Gao R.Z., Cheng Z.B., Zhou Y.J.; RT ; RL Submitted (23-JAN-2011) to the INSDC. RL Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences, RL No. 50.Zhongling Road, Nanjing, Jiangsu 210014, China XX FH Key Location/Qualifiers FH FT source 1. .1677 FT /organism="Rice black streaked dwarf virus" FT /segment="10" FT /host="rice" FT /isolate="SDjining10" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="Aug-2009" FT /db_xref="taxon:10990" FT CDS 1. .1677 FT /codon_start=1 FT /product="capsid protein" FT /protein_id="AEK67413.1" FT /translation="MADIRLDIAPDLIHNGVPQRLSDTIILNNRPTITLLSHFNNLFHE FT LNIVKSPHVASSQTTVNLYIRKHLLTRLHDRLQTVETSTLPNITQLKDHIRSFFQNEHQ FT PIFQTLTNNDLSEEFVGVTTFGLSLFATSKLDAEQIERVQIETLTEGNITLKPFSADGL FT EVILDDSYIGIVGKIPGLEVHKLLDKCCREVPAQMGILTDEVKLLMRTGKLRIDGGYDF FT NCPASTTDVTHYGGYDQFSRQMFERLNLFYNISLSIIPVSALKTVHLFEKELSVLDADK FT SLLEQTWSAVASFVETWQIKSKVKADDPDEYELTSLSTLRTNYDGTSASSPFTDKKFID FT WYIKTFSKTEKGSSLRRNELEEKSATSTPTTVKKVKIHFSVQYFDEFKVNGHEKSVVVQ FT THKGEMTLDYYRKIGEVLSAIWKRGKSLAVPCFDYIKLGVEKAFHLAPVILKKYNLTID FT DIINFIDKGPSYLAKLDKIDDWSLISKLIITSVLPNIIQAVYKTDPSNNVMNSVIISRA FT NNLLKSDRDRLLKKALSANVSSSNTSSHEHVQKIVLNKVTR" XX SQ Sequence 1677 BP; 552 A; 306 C; 294 G; 525 T; 0 other; hq916903 Length: 1677 26-JUL-2011 Type: N Check: 7815 .. 1 atggctgaca taagactcga catagcgccc gatcttatcc ataatggtgt 51 accccagaga ctttccgata caataatttt aaacaaccga ccaacaatca 101 ctctgctatc tcatttcaac aatctatttc atgaattaaa cattgtcaaa 151 tcaccccacg ttgcatcttc ccaaactacc gttaatttgt atattcgtaa 201 gcatttgctg acccgacttc atgatagact gcaaactgta gaaactagca 251 ctttacccaa catcacgcaa cttaaagacc atattcgtag cttctttcaa 301 aatgaacacc aacctatttt tcagactcta acgaacaacg acctaagtga 351 agaatttgta ggtgtgacta cttttggact aagcttattt gctacctcca 401 aacttgatgc tgaacaaata gaacgtgtac aaattgagac cctaactgaa 451 ggaaacatta ctttaaagcc cttttccgct gatggtttag aagtcattct 501 cgatgatagt tatattggta tagttggtaa aattccaggt ttagaagttc 551 ataaattgct agataaatgc tgtcgtgaag ttcctgctca aatgggaata 601 cttactgatg aagttaaact tttgatgcgt actggtaaat taagaattga 651 tggtggttac gattttaatt gtcctgcaag cactacggat gttacacatt 701 acggtggtta tgaccaattt tcacgtcaaa tgttcgaacg tttgaatcta 751 ttttataata ttagccttag tataatcccc gtttcagctt tgaaaacagt 801 tcatttattt gaaaaagaac taagtgtttt ggatgcagat aaatctttac 851 tcgaacaaac ttggagcgca gtagcgtcat ttgttgaaac ttggcagatt 901 aaatctaaag ttaaagccga tgatccagat gaatatgaat tgaccagttt 951 gtccacgttg cgtactaatt acgatggcac ctctgcttct agtcctttta 1001 cagataagaa attcattgat tggtacatta agactttttc taaaactgag 1051 aaaggatcgt cgttgcgtcg aaacgaatta gaagagaaaa gtgccactag 1101 tactccaact acagtaaaaa aagttaaaat tcatttctcc gttcaatatt 1151 ttgatgaatt taaagttaat ggacatgaaa aaagcgttgt agttcaaact 1201 cataaaggcg aaatgacgtt agattattat cgtaaaattg gcgaagtgtt 1251 aagtgctatt tggaaacgtg ggaaatcttt ggctgtacct tgttttgatt 1301 acattaagct tggcgttgag aaagcgtttc atttagcacc cgtaattctg 1351 aagaagtata acttgactat tgatgatatt atcaacttca ttgacaaagg 1401 accttcttat ttagctaaat tagacaagat tgatgattgg tctctaattt 1451 caaagctaat cattaccagc gttttaccta acatcattca agctgtttac 1501 aaaaccgatc caagtaacaa tgttatgaac tcagtgatta tcagtagagc 1551 gaacaatttg ttgaaatctg atagggacag gctattaaag aaggcacttt 1601 ccgccaacgt ttcttcttcc aacacatcta gtcatgaaca tgtacagaag 1651 atagtattaa acaaagtgac aagatga