Sequence of DPV Tuber aestivum mitovirus

Tuber aestivum mitovirus, complete genome.

ACC No: HQ992989

Dated: 2011-06-06 | Length: 3480 | CRC: -1000707583

                
ID   HQ992989; SV 1; linear; genomic RNA; STD; VRL; 3480 BP.
XX
AC   HQ992989;
XX
DT   06-JUN-2011 (Rel. 109, Created)
DT   06-JUN-2011 (Rel. 109, Last updated, Version 1)
XX
DE   Tuber aestivum mitovirus, complete genome.
XX
KW   .
XX
OS   Tuber aestivum mitovirus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Narnaviridae;
OC   Mitovirus; unclassified Mitovirus.
XX
RN   [1]
RP   1-3480
RX   PUBMED; 21479945.
RA   Stielow B., Klenk H.P., Winter S., Menzel W.;
RT   "A novel Tuber aestivum (Vittad.) mitovirus";
RL   Arch. Virol. 156(6):1107-1110(2011).
XX
RN   [2]
RP   1-3480
RA   Menzel W., Stielow B.;
RT   ;
RL   Submitted (24-JAN-2011) to the INSDC.
RL   DSMZ-German Collection of Microorganisms and Cell Cultures, Inhoffenstrasse
RL   7B, Braunschweig 38124, Germany
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .3480
FT                   /organism="Tuber aestivum mitovirus"
FT                   /host="Tuber aestivum"
FT                   /isolate="Jaszag 2"
FT                   /mol_type="genomic RNA"
FT                   /country="Hungary"
FT                   /collection_date="2009"
FT                   /db_xref="taxon:1037523"
FT   5'UTR           1. .149
FT   CDS             150. .2531
FT                   /codon_start=1
FT                   /transl_table=4
FT                   /product="RNA-dependent RNA polymerase"
FT                   /note="RdRp"
FT                   /protein_id="AEG79311.1"
FT                   /translation="MMNPFIRLGSLLMGKTTKELIIGLYSCVQTLHKIYLSQGSRGLAI
FT                   RLKASSTYLMKSWSGDPLLDCKAFGPTMSLTPRGIPIWIPSAWRCQISSRNLAIFRVTM
FT                   TLCNLYRVLPYQGKLKLSTITDDRKGSTPDLMFSFIKDKFAPNITNRVPYPGIFSWDPK
FT                   PLLTRGPGAQKEKNTMSGFGMALRAIHETGMLDHLKAYALYTGLNPQLESLKVIWEGTR
FT                   KHCSIGPIGKLAFKQEPGKVRVFAMVDCITQWFLHPLHKYLFSVLRTTKEDATFDQEKG
FT                   INLVRLALSKKLDKSVFSFDLSAATDRLPMDIQMVILNSLTPFWLAEKAVRHGVKGGLG
FT                   DAWADLLVDRDYYLPRWSGYARDSKVRYAVGQPMGALSSWAMLALTHHMIVQFAAASVG
FT                   VTGWFKEYMVLGDDIVIYNSEVAKAYSTLMGTLGVGISDTKSLTSKIGVFEFAKRLMDL
FT                   EGPCQGLPLAEFAAARFNLSILFQSFRSRTLYPKISTFMRFLGFGYKVLGSLGMRLGDM
FT                   RKRSGYFETVAYSPLVTDKSVNKWSEFFKRFSTYDLYPLVEACVYKAYHLIPALTKFDR
FT                   WNLWRTLFPHFDDKKILLIPEVAGRHLESLFTSMLDNKVAKYKADHSVYVNRLNRAEVP
FT                   TNDWEAIDTLLSIMETSPPTSDLLQDPDMNELGFGLSVSNYDEDNKSKTCSLSLPYTVF
FT                   TKIPQLLDSIDDWVEPIIPDKHPEVSADVNRPLIHKPGKVFVKGIATGKNENNKVEITK
FT                   MLQDKKFLAYIIESGKITIYSPAFQAMIRASWAKAQSGSK"
FT   3'UTR           2532. .3480
XX
SQ   Sequence 3480 BP; 1051 A; 676 C; 713 G; 1040 T; 0 other;

hq992989 Length: 3480  06-JUN-2011  Type: N  Check: 5268  ..

       1  ccgaagggag aagtatttat tttaaaatta aaaataaatt aatagtcaca
      51  actacaacta ttaaaagaac tgcgaaactt gtttcgcaaa ctcttaatag
     101  agttggtgct atcttctctt ggcattggag tgtaaaagct ccaagatcaa
     151  tgatgaatcc attcataaga ttgggttcat tattgatggg taaaactact
     201  aaagagttaa tcataggttt atattcctgt gtgcaaactc ttcacaagat
     251  ctatctctca caagggagta gaggtctagc aatcagattg aaagctagct
     301  ctacatacct tatgaagagt tgatctggtg atccattact ggattgtaag
     351  gccttcgggc ctacaatgag tcttacacct aggggtatac ctatatgaat
     401  accttccgcc tgaaggtgtc agatttcttc tagaaatttg gctatcttca
     451  gagttacaat gacactctgt aatttatata gagtgcttcc ttatcagggg
     501  aaattgaaac tttctaccat cactgatgat agaaaaggtt caactcccga
     551  cttaatgttt tctttcatta aggataagtt cgcaccgaat ataactaaca
     601  gagtgcctta ccctggcatc ttctcttggg atccgaaacc tcttttaaca
     651  agaggtcctg gagctcaaaa agagaagaac accatgtcgg gtttcgggat
     701  ggctcttaga gctatacacg aaactggcat gctcgatcat cttaaggctt
     751  atgctctgta tactgggtta aacccccagt tagagtcgct taaagtgatc
     801  tgagaaggga caagaaaaca ttgttccatt ggacctatcg gtaagcttgc
     851  ttttaagcaa gaacccggta aggtaagagt atttgcaatg gttgattgta
     901  tcactcagtg attccttcac ccattacaca aatatctctt ttctgttcta
     951  aggacaacca aagaagatgc cacttttgat caagagaaag gtattaatct
    1001  ggttagatta gccctttcaa agaaacttga taaaagtgtt ttctcctttg
    1051  atttatctgc cgctactgat agattaccta tggatatcca aatggtaatc
    1101  cttaactctc taacaccttt ttggcttgcc gaaaaggctg ttagacatgg
    1151  agttaaagga ggactagggg atgcctgggc tgatctatta gtagacagag
    1201  attattatct acctagatga tctggctatg ccagagattc taaggttaga
    1251  tatgccgtag gacagccaat gggagcattg tcttcttgag caatgttggc
    1301  tcttactcac catatgattg ttcaattcgc cgcagcctcc gtaggagtaa
    1351  ctgggtgatt taaagaatat atggtgttag gagacgacat tgtcatatac
    1401  aactctgaag ttgcaaaagc ctattcaacc ctaatgggca ctcttggtgt
    1451  tggaatctct gatacgaagt cattgacttc taagatcgga gtattcgaat
    1501  tcgccaagag actaatggat ctagaaggac cttgtcaagg tcttccatta
    1551  gctgaattcg cagctgctag gtttaacctt agcattctgt tccagagttt
    1601  cagatctaga accctatatc caaaaataag tacctttatg aggttcttag
    1651  gttttggtta taaagtgttg ggtagtcttg gaatgagatt aggggatatg
    1701  agaaagagat caggttactt tgaaacagta gcctattctc ctcttgtaac
    1751  tgataaatca gtaaataagt gatctgaatt ctttaaaaga ttcagtactt
    1801  atgatttata cccacttgtg gaggcttgtg tttacaaggc ctaccaccta
    1851  atccctgctc ttacaaagtt cgacagatga aatctctgga gaactttatt
    1901  tccacatttt gatgataaga aaatcctact tatcccagaa gtggcaggta
    1951  gacacctgga gagcttgttt acttctatgc ttgacaataa agtcgccaag
    2001  tataaagcag accattccgt ctacgtaaac agactgaata gggctgaggt
    2051  tcctactaat gattgagaag ctattgatac gcttcttagc attatggaga
    2101  cttctccccc taccagtgat cttttacaag atcccgatat gaatgagtta
    2151  ggcttcggtc ttagtgtttc aaactatgac gaagataaca agtctaagac
    2201  ttgttccctt tctcttccat atacggtgtt tacaaagatt ccacaacttc
    2251  ttgattcaat cgatgattga gtcgaaccta ttattccgga taaacatccg
    2301  gaagtcagtg ctgatgtgaa cagacctctt atacacaaac ctggaaaggt
    2351  ttttgttaag gggattgcca ctggaaagaa cgagaataat aaggtagaaa
    2401  tcaccaagat gttgcaggac aagaaatttc ttgcctacat catcgaaagt
    2451  ggtaaaatta ccatatattc tcccgctttc caagcaatga ttagagccag
    2501  ttgggctaaa gcccaatctg gttctaaata ggcgactgat tcaattaaat
    2551  caagctctat aatcctggaa actgcgattt accatatggt agagcccggt
    2601  ataacggtat tgggctccgt aaccatccca tatggatttc ggaggttttc
    2651  tagattaaga tacgatatag ttcgaattat taagagtaag gccacaaagg
    2701  accggcatct gcttaattct tcaacttaaa ttctaagatg tcgatcacaa
    2751  aggaccgata acggtcttag aattctactt aagaactatc ctagcctatt
    2801  aagctaggga gcgggaagat gagtcgacca caaaggaccg ataacgatca
    2851  tcttctctca gtatctcagc tgatttaatt taatctaact gattgatgag
    2901  ttgttgacta gtctattttt ataataaaaa cgtttaatcg ttttattaga
    2951  ctgctcacgg tattcatact cgccttttaa tccaataggc caccgatctc
    3001  gggtttgatc tctttaatgg agaaacagaa caccgatccc ggagctgagg
    3051  gaagattgga aatcttcata aaaggataat agtagtttta cacctggtat
    3101  ataaccactc ttcgagtgaa gaggtgagat tcttttcaac agaaagatta
    3151  cgaatctttc cttctcacac aaccttattt agccctttgg gcgggataag
    3201  ggaaagggaa tggacaatag actttagtta tcaagatgac actaaagttg
    3251  gtccccattc cttgagactt agggggataa aaggccctcc taagctgctc
    3301  ggtagctctt ttttcgaatg acgttatata tcttgagagg ccctccatac
    3351  ggaggagacc tcacaagact ttagacgcat ctaagcggaa ctatatctag
    3401  taaatggggt atctccttac agggaggaac tccggggtct agatgaagct
    3451  aagcatggta tccaaccatg cttagtcccc