Sequence of DPV Tuber aestivum mitovirus
Tuber aestivum mitovirus, complete genome.
ACC No: HQ992989
Dated: 2011-06-06 | Length: 3480 | CRC: -1000707583
ID HQ992989; SV 1; linear; genomic RNA; STD; VRL; 3480 BP. XX AC HQ992989; XX DT 06-JUN-2011 (Rel. 109, Created) DT 06-JUN-2011 (Rel. 109, Last updated, Version 1) XX DE Tuber aestivum mitovirus, complete genome. XX KW . XX OS Tuber aestivum mitovirus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Narnaviridae; OC Mitovirus; unclassified Mitovirus. XX RN [1] RP 1-3480 RX PUBMED; 21479945. RA Stielow B., Klenk H.P., Winter S., Menzel W.; RT "A novel Tuber aestivum (Vittad.) mitovirus"; RL Arch. Virol. 156(6):1107-1110(2011). XX RN [2] RP 1-3480 RA Menzel W., Stielow B.; RT ; RL Submitted (24-JAN-2011) to the INSDC. RL DSMZ-German Collection of Microorganisms and Cell Cultures, Inhoffenstrasse RL 7B, Braunschweig 38124, Germany XX FH Key Location/Qualifiers FH FT source 1. .3480 FT /organism="Tuber aestivum mitovirus" FT /host="Tuber aestivum" FT /isolate="Jaszag 2" FT /mol_type="genomic RNA" FT /country="Hungary" FT /collection_date="2009" FT /db_xref="taxon:1037523" FT 5'UTR 1. .149 FT CDS 150. .2531 FT /codon_start=1 FT /transl_table=4 FT /product="RNA-dependent RNA polymerase" FT /note="RdRp" FT /protein_id="AEG79311.1" FT /translation="MMNPFIRLGSLLMGKTTKELIIGLYSCVQTLHKIYLSQGSRGLAI FT RLKASSTYLMKSWSGDPLLDCKAFGPTMSLTPRGIPIWIPSAWRCQISSRNLAIFRVTM FT TLCNLYRVLPYQGKLKLSTITDDRKGSTPDLMFSFIKDKFAPNITNRVPYPGIFSWDPK FT PLLTRGPGAQKEKNTMSGFGMALRAIHETGMLDHLKAYALYTGLNPQLESLKVIWEGTR FT KHCSIGPIGKLAFKQEPGKVRVFAMVDCITQWFLHPLHKYLFSVLRTTKEDATFDQEKG FT INLVRLALSKKLDKSVFSFDLSAATDRLPMDIQMVILNSLTPFWLAEKAVRHGVKGGLG FT DAWADLLVDRDYYLPRWSGYARDSKVRYAVGQPMGALSSWAMLALTHHMIVQFAAASVG FT VTGWFKEYMVLGDDIVIYNSEVAKAYSTLMGTLGVGISDTKSLTSKIGVFEFAKRLMDL FT EGPCQGLPLAEFAAARFNLSILFQSFRSRTLYPKISTFMRFLGFGYKVLGSLGMRLGDM FT RKRSGYFETVAYSPLVTDKSVNKWSEFFKRFSTYDLYPLVEACVYKAYHLIPALTKFDR FT WNLWRTLFPHFDDKKILLIPEVAGRHLESLFTSMLDNKVAKYKADHSVYVNRLNRAEVP FT TNDWEAIDTLLSIMETSPPTSDLLQDPDMNELGFGLSVSNYDEDNKSKTCSLSLPYTVF FT TKIPQLLDSIDDWVEPIIPDKHPEVSADVNRPLIHKPGKVFVKGIATGKNENNKVEITK FT MLQDKKFLAYIIESGKITIYSPAFQAMIRASWAKAQSGSK" FT 3'UTR 2532. .3480 XX SQ Sequence 3480 BP; 1051 A; 676 C; 713 G; 1040 T; 0 other; hq992989 Length: 3480 06-JUN-2011 Type: N Check: 5268 .. 1 ccgaagggag aagtatttat tttaaaatta aaaataaatt aatagtcaca 51 actacaacta ttaaaagaac tgcgaaactt gtttcgcaaa ctcttaatag 101 agttggtgct atcttctctt ggcattggag tgtaaaagct ccaagatcaa 151 tgatgaatcc attcataaga ttgggttcat tattgatggg taaaactact 201 aaagagttaa tcataggttt atattcctgt gtgcaaactc ttcacaagat 251 ctatctctca caagggagta gaggtctagc aatcagattg aaagctagct 301 ctacatacct tatgaagagt tgatctggtg atccattact ggattgtaag 351 gccttcgggc ctacaatgag tcttacacct aggggtatac ctatatgaat 401 accttccgcc tgaaggtgtc agatttcttc tagaaatttg gctatcttca 451 gagttacaat gacactctgt aatttatata gagtgcttcc ttatcagggg 501 aaattgaaac tttctaccat cactgatgat agaaaaggtt caactcccga 551 cttaatgttt tctttcatta aggataagtt cgcaccgaat ataactaaca 601 gagtgcctta ccctggcatc ttctcttggg atccgaaacc tcttttaaca 651 agaggtcctg gagctcaaaa agagaagaac accatgtcgg gtttcgggat 701 ggctcttaga gctatacacg aaactggcat gctcgatcat cttaaggctt 751 atgctctgta tactgggtta aacccccagt tagagtcgct taaagtgatc 801 tgagaaggga caagaaaaca ttgttccatt ggacctatcg gtaagcttgc 851 ttttaagcaa gaacccggta aggtaagagt atttgcaatg gttgattgta 901 tcactcagtg attccttcac ccattacaca aatatctctt ttctgttcta 951 aggacaacca aagaagatgc cacttttgat caagagaaag gtattaatct 1001 ggttagatta gccctttcaa agaaacttga taaaagtgtt ttctcctttg 1051 atttatctgc cgctactgat agattaccta tggatatcca aatggtaatc 1101 cttaactctc taacaccttt ttggcttgcc gaaaaggctg ttagacatgg 1151 agttaaagga ggactagggg atgcctgggc tgatctatta gtagacagag 1201 attattatct acctagatga tctggctatg ccagagattc taaggttaga 1251 tatgccgtag gacagccaat gggagcattg tcttcttgag caatgttggc 1301 tcttactcac catatgattg ttcaattcgc cgcagcctcc gtaggagtaa 1351 ctgggtgatt taaagaatat atggtgttag gagacgacat tgtcatatac 1401 aactctgaag ttgcaaaagc ctattcaacc ctaatgggca ctcttggtgt 1451 tggaatctct gatacgaagt cattgacttc taagatcgga gtattcgaat 1501 tcgccaagag actaatggat ctagaaggac cttgtcaagg tcttccatta 1551 gctgaattcg cagctgctag gtttaacctt agcattctgt tccagagttt 1601 cagatctaga accctatatc caaaaataag tacctttatg aggttcttag 1651 gttttggtta taaagtgttg ggtagtcttg gaatgagatt aggggatatg 1701 agaaagagat caggttactt tgaaacagta gcctattctc ctcttgtaac 1751 tgataaatca gtaaataagt gatctgaatt ctttaaaaga ttcagtactt 1801 atgatttata cccacttgtg gaggcttgtg tttacaaggc ctaccaccta 1851 atccctgctc ttacaaagtt cgacagatga aatctctgga gaactttatt 1901 tccacatttt gatgataaga aaatcctact tatcccagaa gtggcaggta 1951 gacacctgga gagcttgttt acttctatgc ttgacaataa agtcgccaag 2001 tataaagcag accattccgt ctacgtaaac agactgaata gggctgaggt 2051 tcctactaat gattgagaag ctattgatac gcttcttagc attatggaga 2101 cttctccccc taccagtgat cttttacaag atcccgatat gaatgagtta 2151 ggcttcggtc ttagtgtttc aaactatgac gaagataaca agtctaagac 2201 ttgttccctt tctcttccat atacggtgtt tacaaagatt ccacaacttc 2251 ttgattcaat cgatgattga gtcgaaccta ttattccgga taaacatccg 2301 gaagtcagtg ctgatgtgaa cagacctctt atacacaaac ctggaaaggt 2351 ttttgttaag gggattgcca ctggaaagaa cgagaataat aaggtagaaa 2401 tcaccaagat gttgcaggac aagaaatttc ttgcctacat catcgaaagt 2451 ggtaaaatta ccatatattc tcccgctttc caagcaatga ttagagccag 2501 ttgggctaaa gcccaatctg gttctaaata ggcgactgat tcaattaaat 2551 caagctctat aatcctggaa actgcgattt accatatggt agagcccggt 2601 ataacggtat tgggctccgt aaccatccca tatggatttc ggaggttttc 2651 tagattaaga tacgatatag ttcgaattat taagagtaag gccacaaagg 2701 accggcatct gcttaattct tcaacttaaa ttctaagatg tcgatcacaa 2751 aggaccgata acggtcttag aattctactt aagaactatc ctagcctatt 2801 aagctaggga gcgggaagat gagtcgacca caaaggaccg ataacgatca 2851 tcttctctca gtatctcagc tgatttaatt taatctaact gattgatgag 2901 ttgttgacta gtctattttt ataataaaaa cgtttaatcg ttttattaga 2951 ctgctcacgg tattcatact cgccttttaa tccaataggc caccgatctc 3001 gggtttgatc tctttaatgg agaaacagaa caccgatccc ggagctgagg 3051 gaagattgga aatcttcata aaaggataat agtagtttta cacctggtat 3101 ataaccactc ttcgagtgaa gaggtgagat tcttttcaac agaaagatta 3151 cgaatctttc cttctcacac aaccttattt agccctttgg gcgggataag 3201 ggaaagggaa tggacaatag actttagtta tcaagatgac actaaagttg 3251 gtccccattc cttgagactt agggggataa aaggccctcc taagctgctc 3301 ggtagctctt ttttcgaatg acgttatata tcttgagagg ccctccatac 3351 ggaggagacc tcacaagact ttagacgcat ctaagcggaa ctatatctag 3401 taaatggggt atctccttac agggaggaac tccggggtct agatgaagct 3451 aagcatggta tccaaccatg cttagtcccc