Sequence of DPV Influenza A virus

Influenza A/Puerto Rico/8/34(Cambridge) (H1N1), polymerase 1 (seg 2 of complete genome).

ACC No: J02151

Dated: 2000-03-04 | Length: 2341 | CRC: -323326152

                !!NA_SEQUENCE 1.0
ID   ORP834P1   standard; RNA; VRL; 2341 BP.
XX
AC   J02151;
XX
SV   J02151.1
XX
DT   13-JUN-1985 (Rel. 06, Created)
DT   04-MAR-2000 (Rel. 63, Last updated, Version 3)
XX
DE   Influenza A/Puerto Rico/8/34(Cambridge) (H1N1), polymerase 1 (seg 2 of
DE   complete genome).
XX
KW   complete genome; polymerase; RNA polymerase.
XX
OS   Influenzavirus A
OC   Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
OC   Influenza A viruses.
XX
RN   [1]
RP   1-2341
RX   MEDLINE; 82196884.
RA   Winter G., Fields S.;
RT   "nucleotide sequence of human influenza A/PR/8/34 segment 2";
RL   Nucleic Acids Res. 10:2135-2143(1982).
XX
DR   SWISS-PROT; P03431; RRP1_IAPUE.
XX
CC   [1] compared this sequence with that for p2 and p3 (see separate
CC   entries), but found no significant homology between any two of the
CC   three sequences. p1 cds determined by consideration of open reading
CC   frames and the mw and net charge of the p1 protein. this sequence
CC   completes the A/Puerto Rico/8/34 genome; see separate entries for
CC   other segments.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2341
FT                   /db_xref="taxon:11320"
FT                   /organism="Influenzavirus A"
FT   CDS             25. .2298
FT                   /codon_start=1
FT                   /db_xref="SWISS-PROT:P03431"
FT                   /note="polymerase 1"
FT                   /protein_id="AAA43581.1"
FT                   /translation="MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNR
FT                   THQYSEKARWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFE
FT                   NSCIETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRL
FT                   IDFLKDVMESMKKEEMGITTHFQRKRRVRDNMTKKMITQRTIGKRKQRLNKRSYLIRAL
FT                   TLNTMTKDAERGKLKRRAIATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAK
FT                   LANVVRKMMTNSQDTELSLTITGDNTKWNENQNPRMFLAMITYMTRNQPEWFRNVLSIA
FT                   PIMFSNKMARLGKGYMFESKSMKLRTQIPAEMLASIDLKYFNDSTRKKIEKIRPLLIEG
FT                   TASLSPGMMMGMFNMLSTVLGVSILNLGQKRYTKTTYWWDGLQSSDDFALIVNAPNHEG
FT                   IQAGVDRFYRTCKLHGINMSKKKSYINRTGTFEFTSFFYRYGFVANFSMELPSFGVSGS
FT                   NESADMSIGVTVIKNNMINNDLGPATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFEI
FT                   KKLWEQTRSKAGLLVSDGGPNLYNIRNLHIPEVCLKWELMDEDYQGRLCNPLNPFVSHK
FT                   EIESMNNAVMMPAHGPAKNMEYDAVATTHSWIPKRNRSILNTSQRGVLEDEQMYQRCCN
FT                   LFEKFFPSSSYRRPVGISSMVEAMVSRARIDARIDFESGRIKKEEFTEIMKICSTIEEL
FT                   RRQK"
XX
SQ   Sequence 2341 BP; 811 A; 459 C; 526 G; 545 T; 0 other;

J02151  Length: 2341  September 18, 2002 10:52  Type: N  Check: 2284  ..

       1  agcgaaagca ggcaaaccat ttgaatggat gtcaatccga ccttactttt
      51  cttaaaagtg ccagcacaaa atgctataag cacaactttc ccttataccg
     101  gagaccctcc ttacagccat gggacaggaa caggatacac catggatact
     151  gtcaacagga cacatcagta ctcagaaaag gcaagatgga caacaaacac
     201  cgaaactgga gcaccgcaac tcaacccgat tgatgggcca ctgccagaag
     251  acaatgaacc aagtggttat gcccaaacag attgtgtatt ggaagcaatg
     301  gctttccttg aggaatccca tcctggtatt tttgaaaact cgtgtattga
     351  aacgatggag gttgttcagc aaacacgagt agacaagctg acacaaggcc
     401  gacagaccta tgactggact ttaaatagaa accagcctgc tgcaacagca
     451  ttggccaaca caatagaagt gttcagatca aatggcctca cggccaatga
     501  gtctggaagg ctcatagact tccttaagga tgtaatggag tcaatgaaaa
     551  aagaagaaat ggggatcaca actcattttc agagaaagag acgggtgaga
     601  gacaatatga ctaagaaaat gataacacag agaacaatag gtaaaaggaa
     651  acagagattg aacaaaagga gttatctaat tagagcattg accctgaaca
     701  caatgaccaa agatgctgag agagggaagc taaaacggag agcaattgca
     751  accccaggga tgcaaataag ggggtttgta tactttgttg agacactggc
     801  aaggagtata tgtgagaaac ttgaacaatc agggttgcca gttggaggca
     851  atgagaagaa agcaaagttg gcaaatgttg taaggaagat gatgaccaat
     901  tctcaggaca ccgaactttc tttgaccatc actggagata acaccaaatg
     951  gaacgaaaat cagaatcctc ggatgttttt ggccatgatc acatatatga
    1001  ccagaaatca gcccgaatgg ttcagaaatg ttctaagtat tgctccaata
    1051  atgttctcaa acaaaatggc gagactggga aaagggtata tgtttgagag
    1101  caagagtatg aaacttagaa ctcaaatacc tgcagaaatg ctagcaagca
    1151  ttgatttgaa atatttcaat gattcaacaa gaaagaagat tgaaaaaatc
    1201  cgaccgctct taatagaggg gactgcatca ttgagccctg gaatgatgat
    1251  gggcatgttc aatatgttaa gcactgtatt aggcgtctcc atcctgaatc
    1301  ttggacaaaa gagatacacc aagactactt actggtggga tggtcttcaa
    1351  tcctctgacg attttgctct gattgtgaat gcacccaatc atgaagggat
    1401  tcaagccgga gtcgacaggt tttatcgaac ctgtaagcta catggaatca
    1451  atatgagcaa gaaaaagtct tacataaaca gaacaggtac atttgaattc
    1501  acaagttttt tctatcgtta tgggtttgtt gccaatttca gcatggagct
    1551  tcccagtttt ggtgtgtctg ggagcaacga gtcagcggac atgagtattg
    1601  gagttactgt catcaaaaac aatatgataa acaatgatct tggtccagca
    1651  acagctcaaa tggcccttca gttgttcatc aaagattaca ggtacacgta
    1701  ccgatgccat agaggtgaca cacaaataca aacccgaaga tcatttgaaa
    1751  taaagaaact gtgggagcaa acccgttcca aagctggact gctggtctcc
    1801  gacggaggcc caaatttata caacattaga aatctccaca ttcctgaagt
    1851  ctgcctaaaa tgggaattga tggatgagga ttaccagggg cgtttatgca
    1901  acccactgaa cccatttgtc agccataaag aaattgaatc aatgaacaat
    1951  gcagtgatga tgccagcaca tggtccagcc aaaaacatgg agtatgatgc
    2001  tgttgcaaca acacactcct ggatccccaa aagaaatcga tccatcttga
    2051  atacaagtca aagaggagta cttgaagatg aacaaatgta ccaaaggtgc
    2101  tgcaatttat ttgaaaaatt cttccccagc agttcataca gaagaccagt
    2151  cgggatatcc agtatggtgg aggctatggt ttccagagcc cgaattgatg
    2201  cacggattga tttcgaatct ggaaggataa agaaagaaga gttcactgag
    2251  atcatgaaga tctgttccac cattgaagag ctcagacggc aaaaatagtg
    2301  aatttagctt gtccttcatg aaaaaatgcc ttgttcctac t