Sequence of DPV Saccharomyces cerevisiae virus L-A

Saccharomyces cerevisiae virus L-A major coat protein, ssRNA-binding protein, and RNA polymerase genes, complete cds.

ACC No: J04692

Dated: 1999-10-05 | Length: 4579 | CRC: -1920991326

                !!NA_SEQUENCE 1.0
ID   SCSCOATRN  standard; RNA; VRL; 4579 BP.
XX
AC   J04692;
XX
SV   J04692.1
XX
DT   23-NOV-1989 (Rel. 21, Created)
DT   05-OCT-1999 (Rel. 61, Last updated, Version 5)
XX
DE   Saccharomyces cerevisiae virus L-A major coat protein, ssRNA-binding
DE   protein, and RNA polymerase genes, complete cds.
XX
KW   major coat protein; RNA polymerase; ssRNA-binding protein.
XX
OS   Saccharomyces cerevisiae virus L-A
OC   Viruses; dsRNA viruses; Totiviridae; Totivirus.
XX
RN   [1]
RP   1-4579
RX   MEDLINE; 89214077.
RA   Icho T., Wickner R.B.;
RT   "The double-stranded RNA genome of yeast virus L-A encodes its own putative
RT   RNA polymerase by fusing two open reading frames";
RL   J. Biol. Chem. 264(12):6716-6723(1989).
XX
DR   SPTREMBL; Q87022; Q87022.
DR   SPTREMBL; Q87023; Q87023.
DR   SWISS-PROT; P32503; GAG_SCVLA.
XX
CC   On Oct 14, 1994 this sequence version replaced gi:340546.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .4579
FT                   /db_xref="taxon:11008"
FT                   /organism="Saccharomyces cerevisiae virus L-A"
FT                   /clone="pTIL05"
FT   CDS             join(30. .1961,1961. .4546)
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q87022"
FT                   /product="ssRNA-binding protein"
FT                   /protein_id="AAA50507.1"
FT                   /translation="MLRFVTKNSQDKSSDLFSICSDRGTFVAHNRVRTDFKFDNLVFNR
FT                   VYGVSQKFTLVGNPTVCFNEGSSYLEGIAKKYLTLDGGLAIDNVLNELRSTCGIPGNAV
FT                   ASHAYNITSWRWYDNHVALLMNMLRAYHLQVLTEQGQYSAGDIPMYHDGHVKIKLPVTI
FT                   DDTAGPTQFAWPSDRSTDSYPDWAQFSESFPSIDVPYLDVRPLTVTEVNFVLMMMSKWH
FT                   RRTNLAIDYEAPQLADKFAYRHALTVQDADEWIEGDRTDDQFRPPSSKVMLSALRKYVN
FT                   HNRLYNQFYTAAQLLAQIMMKPVPNCAEGYAWLMHDALVNIPKFGSIRGRYPFLLSGDA
FT                   ALIQATALEDWSAIMAKPELVFTYAMQVSVALNTGLYLRRVKKTGFGTTIDDSYEDGAF
FT                   LQPETFVQAALACCTGQDAPLNGMSDVYVTYPDLLEFDAVTQVPITVIEPAGYNIVDDH
FT                   LVVVGVPVACSPYMIFPVAAFDTANPYCGNFVIKAANKYLRKGAVYDKLEAWKLAWALR
FT                   VAGYDTHFKVYGDTHGLTKFYADNGDTWTHIPEFVTDGDVMEVFVTAIERRARHFVELP
FT                   RLNSPAFFRSVEVSTTIYDTHVQAGAHAVYHASRINLDYVKPVSTGIQVINAGELKNYW
FT                   GSVRRTQQGFRSGRSYDASCNAYRRTYSWRCPRRVDRTGGQCFSRVNVIEPSHGPRPTR
FT                   YILQEPGTYPAWIRFRNRVQAVSRQKATHFLFDIVPAAVISDFTTSDTSSFAYKSHTYA
FT                   VNVTALRFSDTYALYVQTDTNMTILSPAARRQASATYSQVAGFCYNTPTVMDSLANILD
FT                   VDRNIRPKHFKGLRLYTRSKVTAQHHTHLRPDELVEAAAKVSPRRKYYLMCVVELLANL
FT                   QVDLEAAVATILAYVLTLSEKFVPIFLDSRAIWVGEPGPDALTARLKASSGQIKSIHTA
FT                   DYEPLTELFELAVLMNRGVGHVSWQAEKDHRLNPDVAVVDQARLYSCVRDMFEGSKQTY
FT                   KYPFMTWDDYTANRWEWVPGGSVHSQYEEDNDYIYPGQYTRNKFITVNKMPKHKISRMI
FT                   ASPPEVRAWTSTKYEWGKQRAIYGTDLRSTLITNFAMFRCEDVLTHKFPVGDQAEAAKV
FT                   HKRVNMMLDGASSFCFDYDDFNSQHSIASMYTVLCAFRDTFSRNMSDEQAEAMNWVCES
FT                   VRHMWVLDPDTKEWYRLQGTLLSGWRLTTFMNTVLNWAYMKLAGVFDLDDVQDSVHNGD
FT                   DVMISLNRVSTAVRIMDAMHRINARAQPAKCNLFSISEFLRVEHGMSGGDGLGAQYLSR
FT                   SCATLVHSRIESNEPLSVVRVMEADQARLRDLANRTRVQSAVTAIKEQLDKRVTKIFGV
FT                   GDDVVRDIHTAHRVCGGISTDTWAPVETKIITDNEAYEIPYEIDDPSFWPGVNDYAYKV
FT                   WKNFGERLEFNKIKDAVARGSRSTIALKRKARITSKKNEFANKSEWERTMYKAYKGLAV
FT                   SYYANLSKFMSIPPMANIEFGQARYAMQAALDSSDPLRALQVIL"
FT   CDS             30. .2072
FT                   /codon_start=1
FT                   /db_xref="SWISS-PROT:P32503"
FT                   /product="major coat protein"
FT                   /protein_id="AAA50506.1"
FT                   /translation="MLRFVTKNSQDKSSDLFSICSDRGTFVAHNRVRTDFKFDNLVFNR
FT                   VYGVSQKFTLVGNPTVCFNEGSSYLEGIAKKYLTLDGGLAIDNVLNELRSTCGIPGNAV
FT                   ASHAYNITSWRWYDNHVALLMNMLRAYHLQVLTEQGQYSAGDIPMYHDGHVKIKLPVTI
FT                   DDTAGPTQFAWPSDRSTDSYPDWAQFSESFPSIDVPYLDVRPLTVTEVNFVLMMMSKWH
FT                   RRTNLAIDYEAPQLADKFAYRHALTVQDADEWIEGDRTDDQFRPPSSKVMLSALRKYVN
FT                   HNRLYNQFYTAAQLLAQIMMKPVPNCAEGYAWLMHDALVNIPKFGSIRGRYPFLLSGDA
FT                   ALIQATALEDWSAIMAKPELVFTYAMQVSVALNTGLYLRRVKKTGFGTTIDDSYEDGAF
FT                   LQPETFVQAALACCTGQDAPLNGMSDVYVTYPDLLEFDAVTQVPITVIEPAGYNIVDDH
FT                   LVVVGVPVACSPYMIFPVAAFDTANPYCGNFVIKAANKYLRKGAVYDKLEAWKLAWALR
FT                   VAGYDTHFKVYGDTHGLTKFYADNGDTWTHIPEFVTDGDVMEVFVTAIERRARHFVELP
FT                   RLNSPAFFRSVEVSTTIYDTHVQAGAHAVYHASRINLDYVKPVSTGIQVINAGELKNYW
FT                   GSVRRTQQGLGVVGLTMPAVMPTGEPTAGAAHEELIEQADNVLVE"
FT   CDS             2351. .4546
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q87023"
FT                   /note="RNA-dependent RNA polymerase of icosahedral RNA
FT                   viruses; putative"
FT                   /product="RNA polymerase"
FT                   /protein_id="AAA50508.1"
FT                   /translation="MTILSPAARRQASATYSQVAGFCYNTPTVMDSLANILDVDRNIRP
FT                   KHFKGLRLYTRSKVTAQHHTHLRPDELVEAAAKVSPRRKYYLMCVVELLANLQVDLEAA
FT                   VATILAYVLTLSEKFVPIFLDSRAIWVGEPGPDALTARLKASSGQIKSIHTADYEPLTE
FT                   LFELAVLMNRGVGHVSWQAEKDHRLNPDVAVVDQARLYSCVRDMFEGSKQTYKYPFMTW
FT                   DDYTANRWEWVPGGSVHSQYEEDNDYIYPGQYTRNKFITVNKMPKHKISRMIASPPEVR
FT                   AWTSTKYEWGKQRAIYGTDLRSTLITNFAMFRCEDVLTHKFPVGDQAEAAKVHKRVNMM
FT                   LDGASSFCFDYDDFNSQHSIASMYTVLCAFRDTFSRNMSDEQAEAMNWVCESVRHMWVL
FT                   DPDTKEWYRLQGTLLSGWRLTTFMNTVLNWAYMKLAGVFDLDDVQDSVHNGDDVMISLN
FT                   RVSTAVRIMDAMHRINARAQPAKCNLFSISEFLRVEHGMSGGDGLGAQYLSRSCATLVH
FT                   SRIESNEPLSVVRVMEADQARLRDLANRTRVQSAVTAIKEQLDKRVTKIFGVGDDVVRD
FT                   IHTAHRVCGGISTDTWAPVETKIITDNEAYEIPYEIDDPSFWPGVNDYAYKVWKNFGER
FT                   LEFNKIKDAVARGSRSTIALKRKARITSKKNEFANKSEWERTMYKAYKGLAVSYYANLS
FT                   KFMSIPPMANIEFGQARYAMQAALDSSDPLRALQVIL"
XX
SQ   Sequence 4579 BP; 1296 A; 985 C; 1107 G; 1191 T; 0 other;

J04692  Length: 4579  December 21, 2001 15:45  Type: N  Check: 4687  ..

       1  gaaaaatttt taaattcata taactcccca tgctaagatt tgttactaaa
      51  aactctcaag ataaatcgtc tgatctattc tctatttgtt ctgatcgcgg
     101  aacttttgtt gcccataata gagttcggac tgatttcaag tttgacaact
     151  tagtattcaa ccgagtttat ggtgtttctc aaaaatttac gttagtcggt
     201  aacccgacag tctgctttaa tgaaggcagt tcttacctag aaggtattgc
     251  taaaaagtac ctaactttgg atggaggact tgccattgac aatgtcctca
     301  atgagttgag atccacttgc ggtatcccag gtaatgctgt tgcatctcat
     351  gcgtataata ttacatcctg gcgttggtat gacaatcacg tggcactgtt
     401  gatgaacatg ttgcgtgctt accacttaca agtattgacc gaacagggcc
     451  aatatagcgc tggagatatc cctatgtacc atgatggaca tgtcaaaatc
     501  aagctaccag tgactatcga tgacacggca ggcccaacac aattcgcttg
     551  gcctagtgac aggtctactg attcgtatcc tgattgggca cagttttctg
     601  aatcatttcc atcaatcgac gtcccgtacc tagatgttag gccattgacc
     651  gtaacggaag tcaatttcgt gcttatgatg atgagtaagt ggcatagacg
     701  tactaactta gcgatagact acgaggcacc ccaactagct gataagttcg
     751  cttaccgcca tgcgcttact gttcaagacg ctgacgagtg gatagaaggc
     801  gatagaactg atgaccagtt ccgccccccc tcgtctaaag taatgttatc
     851  ggcacttcgt aagtacgtga accataacag gctgtacaat cagttttaca
     901  ctgcagcaca actgttagct caaattatga tgaaacctgt ccctaactgc
     951  gctgagggct acgcttggct gatgcatgac gcattggtca atataccaaa
    1001  atttgggtct attcgaggaa ggtacccctt tttgttatca ggtgatgcag
    1051  cgttgattca ggctacagcc ctagaagact ggtctgctat catggcgaaa
    1101  cccgagctgg tgttcactta cgcgatgcag gtgtcagtag cgttaaacac
    1151  cggactatac ttacgtcgcg ttaagaaaac aggcttcggc acaactatag
    1201  atgacagcta tgaagatgga gcgtttttgc aaccggagac gttcgttcag
    1251  gccgcactag catgttgtac cggacaagat gcgcccctaa atgggatgtc
    1301  agatgtgtat gtcacttatc cagatcttct agaatttgat gctgttacac
    1351  aagtacccat cacggtcatt gagcccgctg gctataacat tgttgatgat
    1401  catttagtgg ttgtgggtgt acctgtggca tgttcaccat acatgatatt
    1451  tccagtagct gcgtttgata ctgcaaatcc ttactgtggg aattttgtca
    1501  ttaaggctgc taacaagtat ctccgtaagg gtgccgtgta tgataaactc
    1551  gaagcatgga agttggcctg ggcactgagg gtagccgggt atgacactca
    1601  cttcaaagtg tatggcgata cacacggctt aactaagttc tatgctgaca
    1651  acggtgacac atggacacac atacctgaat ttgtcactga cggtgacgtg
    1701  atggaagtat tcgttactgc catcgaacgc agagctagac atttcgttga
    1751  actacctaga ctgaattcac cagcattctt cagatctgta gaagtcagca
    1801  ccactatata tgatactcat gtgcaggctg gtgcgcatgc ggtgtatcat
    1851  gctagtcgaa tcaatcttga ttatgttaag cctgtttcga ccggcattca
    1901  ggtgatcaat gcgggcgaac ttaagaacta ctggggtagt gtgcgtcgta
    1951  ctcagcaggg tttaggagtg gtaggtctta cgatgccagc tgtaatgcct
    2001  accggagaac ctacagctgg cgctgcccac gaagagttga tagaacaggc
    2051  ggacaatgtt ttagtagagt aaacgtaatc gaaccctcac acggaccccg
    2101  ccctacaagg tacatactgc aggaaccagg tacgtaccct gcgtggatta
    2151  gattcaggaa cagagtacaa gctgtatcgc gtcagaaagc cactcacttc
    2201  ttgtttgaca tcgtacctgc cgcagtaatt agtgatttta ctacgtctga
    2251  cacgtcttcg tttgcataca aatcgcacac ctacgctgta aatgtaacag
    2301  cattgaggtt cagtgacact tatgccttgt acgtacagac tgataccaac
    2351  atgacaattt taagcccagc ggcgcgtcgc caggcttctg cgacgtactc
    2401  acaggtggca gggttttgtt ataacacacc taccgttatg gattcgctag
    2451  cgaatatctt ggacgtagac cgcaatatac gacccaaaca cttcaagggt
    2501  ttacggctat acacaaggtc taaggtcact gctcaacatc atactcactt
    2551  gcggccagac gagctagtgg aagcggccgc aaaggtctcg cctagacgta
    2601  aatactactt aatgtgtgta gttgagctgc tcgcgaactt acaagtagat
    2651  cttgaagcag cagtagctac tattctcgca tatgtcctga cactaagtga
    2701  aaaatttgta ccaattttct tggattctag agcaatatgg gtcggtgagc
    2751  ctgggcctga tgctctgact gcacgtctca aggccagtag tgggcagatc
    2801  aagagcatac acacggctga ttacgaacca ctcactgaac tattcgagtt
    2851  agcagtattg atgaaccgag gtgttggcca tgtctcttgg caagctgaaa
    2901  aggatcatcg cttgaatccc gacgtggctg tagttgatca agcacggcta
    2951  tattcgtgtg tgcgcgacat gttcgaagga tcaaagcaga cgtataaata
    3001  tccctttatg acgtgggatg actacactgc aaacagatgg gagtgggttc
    3051  caggtggcag tgtccactct caatacgaag aagacaacga ttatatctat
    3101  cctggtcagt atactaggaa caagttcata actgttaaca aaatgcccaa
    3151  acacaaaata tctagaatga tagcatcacc gcctgaggta cgagcttgga
    3201  cgtcgacgaa gtacgaatgg ggcaagcaac gtgctatcta cgggacggat
    3251  ctacgaagta cactgataac taactttgca atgttcaggt gcgaggatgt
    3301  tctcactcac aagttcccag taggcgacca ggcagaggca gcaaaggtgc
    3351  acaaacgggt gaacatgatg ctggacggtg cctctagttt ctgcttcgat
    3401  tatgatgact tcaattctca gcattcaata gctagtatgt atacggtttt
    3451  gtgcgctttc agggacacat ttagtcgcaa catgtctgat gaacaagcag
    3501  aggcgatgaa ctgggtgtgt gagtccgtca gacacatgtg ggtactagat
    3551  cctgatacca aggagtggta cagactacaa ggtacattac tgtcaggatg
    3601  gcggttaacc acatttatga acactgtgct aaactgggcg tatatgaaat
    3651  tagctggcgt atttgatctg gatgacgttc aagactcggt acacaacggt
    3701  gatgatgtta tgattagtct caaccgcgtg agcacagcag taagaataat
    3751  ggacgctatg caccggataa atgcgcgagc acagccggcg aagtgtaact
    3801  tgttttcgat aagtgaattt ctgagggtag aacacggtat gagcggaggc
    3851  gatggtcttg gggctcagta cttaagtagg tcttgtgcta ctcttgtaca
    3901  cagtaggatt gagtctaacg aaccactgtc agtagtacga gttatggaag
    3951  cagaccaggc tagattgcgc gacctggcaa acagaacgcg ggtacaatct
    4001  gcggtaacag cgataaaaga acaactcgac aaacgtgtca ctaagatatt
    4051  cggagttggt gatgacgttg tgcgcgacat acacacagct cacagggtgt
    4101  gtggcggtat ctcgactgat acctgggcac cggttgaaac taagataata
    4151  acagacaatg aagcatatga aataccatac gaaatagatg atccatcatt
    4201  ttggccaggg gtaaatgatt atgcttataa agtctggaaa aatttcggag
    4251  aacgactcga atttaataag attaaagatg ccgtagctag agggagtagg
    4301  agcactatag ctctgaaacg taaggctagg ataacatcta agaagaatga
    4351  attcgctaac aagtcggaat gggaaaggac aatgtacaaa gcctataagg
    4401  gtttggcagt ctcatactat gctaacctga gcaaattcat gagtatacca
    4451  ccaatggcga acattgaatt tgggcaggct agatatgcta tgcaagcagc
    4501  ccttgatagt tctgatccac tccgggcatt acaggtcata ctgtaattgc
    4551  caaaaagata atgggaatta cccatatgc