Sequence of DPV Trichomonas vaginalis virus 1
Trichomonas vaginalis virus 1 isolate C344, complete genome.
ACC No: JF436869
Dated: 2011-12-16 | Length: 4657 | CRC: -860640383
ID JF436869; SV 1; linear; genomic RNA; STD; VRL; 4657 BP.
XX
AC JF436869;
XX
DT 24-NOV-2011 (Rel. 110, Created)
DT 16-DEC-2011 (Rel. 111, Last updated, Version 2)
XX
DE Trichomonas vaginalis virus 1 isolate C344, complete genome.
XX
KW .
XX
OS Trichomonas vaginalis virus 1
OC Viruses; dsRNA viruses; Totiviridae; Trichomonasvirus.
XX
RN [1]
RP 1-4657
RX PUBMED; 22075038.
RA Fraga J., Rojas L., Sariego I., Fernandez-Calienes A.;
RT "Genetic characterization of three Cuban Trichomonas vaginalis virus.
RT Phylogeny of Totiviridae family";
RL Infect. Genet. Evol. 12(1):113-120(2012).
XX
RN [2]
RP 1-4657
RA Fraga J., Rojas L., Sariego I., Fernandez-Calienes A.;
RT ;
RL Submitted (25-FEB-2011) to the INSDC.
RL Parasitology, Instituto de Medicina Tropical Pedro Kouri, Autopista Novia
RL del Mediodia km 61/2. Aparartado Postal 601, La Habana 10300, Cuba
XX
FH Key Location/Qualifiers
FH
FT source 1. .4657
FT /organism="Trichomonas vaginalis virus 1"
FT /host="Trichomonas vaginalis"
FT /isolate="C344"
FT /mol_type="genomic RNA"
FT /country="Cuba"
FT /collection_date="Feb-2000"
FT /note="genotype: 1"
FT /db_xref="taxon:674953"
FT CDS join(288. .2314,2316. .4578)
FT /codon_start=1
FT /ribosomal_slippage
FT /product="RNA-dependent RNA polymerase"
FT /note="RdRp"
FT /protein_id="AET81012.1"
FT /translation="MEASANVLSHDDNVNKSQNVGPSTLPRSDKQGGEKHENSFNSFSN
FT DFFFNFLRMSTNTHISDSPGVSFVAKDGTPYSSLTIPSGVGRLTHNVVASAVQLNITGS
FT NTLEVDYGFGQDVSRTTGTISIPIFDGEKYKETARALAAIFSKKGMSVDVTSQTVQETL
FT KNSDLTIATVAAGYYTALAARLELTKDVSEAAHTIPFVTALSDTFSAALNAQRTRDVIS
FT SCLRCPNSRNAQRDIVIGTVLWNNVFVESLSEHNMAVPNPNDISFFIRNNALTSSWWCA
FT IWLLNAFLHRLIAPTRIHIFITQGETYHLPPFTDSDVYEAVRFLLAMSKSSRPMPESVE
FT SMLYAYGTQMIIQPHSLYTEGGLIRRMIITVPHLPAHGYFVTNSEFSRYMNIAVPDDGR
FT SAKDFVIGAGTGLLQIVLAYQAAFSCAGPIALHCHANDAISQGMDRVASIYLEGRYFTI
FT PMAVNVATNVAQYTTMVRRDPEYRHTLDRILPRIFGPSTDTVFDFIESGITSSWVSIDA
FT RKRNGRARKFRTAFINRFHDPEFAYMFGITGNGIERMEGKVTSNIAQEVDYLMNAGDLR
FT NCPILRTLKAAEREETVTLMCKEKVGSLYAIDGTVRVFKRFETIDLAQLGWTSHGKVMK
FT PYAFRPPVIQGMTICSTAYTSTAIDIITTVFGPLRLRVGSLLSKAVRCGPVIPSVKHHF
FT NMNYVSILKHNGNEYTFVPGYGWVLQDDYLLNAVKMVGEGDLPPNQLPYDDDLLFTYAK
FT ILLYDYISHFPEFRHKNPRLLTSETELQLFPLKENSAARTKANFYARTLWNETTSDKSA
FT FKPGTYNDTVAGLLMCQQCALMWSLRKLIINKIISGVCDALTEKVSLTLLKRISDWLKQ
FT LGLAYSPIFRLFIELPTLLGRGAIPGDAALDMKHRLTYNPLMTVDVPKTQLHDLIYRLL
FT SRNYNNTKISSFEHHLEERLLWSRSGSHYYPDEQIDQLLPPQPTRKEFLDIVTIDYIKQ
FT CKPQVFIRQSRKLEHGKERFIYNCDTISYVYFDFVLKLFESGWQDSEAILSPGDYSSEC
FT LHAKISGYKYKAMLDYTDFNSQHTIQSMRLIFETMKELLPPEASFALDWCIASFDNMQR
FT SDGRKWTATLPSGHRATTFINTVLNWCYTQMVGLKFDSFMCAGDDVILMSQEPISLTPI
FT LTSHFKFNPSKQSTGTRGEFLRKHYTEEGVFAYPCRAIPSLVSGNWLSETLRDNTPMVV
FT AIQNGIDRLRSRAGLLGVPWSLGLSELVEREGIPEEVGMALLNSHAAGPGLITRDYSSF
FT TVTPKPPRITSTLDYTATRYGVQDLCNDVPWKQLTANECNKLPQQIKKMSHRHCSQTKI
FT TYKCVYEVFKPSGLPTVLSEVSQSGLSLVWWQAMLKEAMQDYSTKKKDVHMYACNACTS
FT SVSGDAFLRATSKMAGVLITSLISSSS"
FT CDS 288. .2324
FT /codon_start=1
FT /product="capsid protein"
FT /protein_id="AET81011.1"
FT /translation="MEASANVLSHDDNVNKSQNVGPSTLPRSDKQGGEKHENSFNSFSN
FT DFFFNFLRMSTNTHISDSPGVSFVAKDGTPYSSLTIPSGVGRLTHNVVASAVQLNITGS
FT NTLEVDYGFGQDVSRTTGTISIPIFDGEKYKETARALAAIFSKKGMSVDVTSQTVQETL
FT KNSDLTIATVAAGYYTALAARLELTKDVSEAAHTIPFVTALSDTFSAALNAQRTRDVIS
FT SCLRCPNSRNAQRDIVIGTVLWNNVFVESLSEHNMAVPNPNDISFFIRNNALTSSWWCA
FT IWLLNAFLHRLIAPTRIHIFITQGETYHLPPFTDSDVYEAVRFLLAMSKSSRPMPESVE
FT SMLYAYGTQMIIQPHSLYTEGGLIRRMIITVPHLPAHGYFVTNSEFSRYMNIAVPDDGR
FT SAKDFVIGAGTGLLQIVLAYQAAFSCAGPIALHCHANDAISQGMDRVASIYLEGRYFTI
FT PMAVNVATNVAQYTTMVRRDPEYRHTLDRILPRIFGPSTDTVFDFIESGITSSWVSIDA
FT RKRNGRARKFRTAFINRFHDPEFAYMFGITGNGIERMEGKVTSNIAQEVDYLMNAGDLR
FT NCPILRTLKAAEREETVTLMCKEKVGSLYAIDGTVRVFKRFETIDLAQLGWTSHGKVMK
FT PYAFRPPVIQGMTICSTAYTSTAIDIITTVFGPLRLRVGSLFE"
XX
SQ Sequence 4657 BP; 1360 A; 1138 C; 933 G; 1226 T; 0 other;
jf436869 Length: 4657 16-DEC-2011 Type: N Check: 8382 ..
1 actcaacatt gctacttcat catgacgaac ccgtgacgta gacacgtaac
51 aagcgtagtg tcctcgacga ttgccatcct cgtgtgaatt ccgggctcgg
101 cttgcactga tggtacctcc tacgaaactt ggagaggctt cggtctcgaa
151 gagcggtaat gtaccctctg cgcctgggac ctaatcgcgt tttgctgtag
201 ctaattcagt agatggaagg attaagcgtc aaacatcttg gttcggcaag
251 tatgtcctta ccagtactct actgagcttg aaaacccatg gaggcttctg
301 ctaatgtgtt atcacatgat gataatgtga ataaatcgca aaatgttgga
351 ccttctactc ttccgaggtc agataaacaa ggaggagaaa aacacgaaaa
401 ttcttttaat tctttttcta atgatttctt ttttaacttc ttacgtatgt
451 caaccaacac gcacatctca gacagtccag gcgtttcttt cgttgctaaa
501 gatggtacac catacagttc actcacaatt ccttcaggtg tcggtcgtct
551 tactcacaat gtagttgcat ctgccgtcca gctcaatatt acgggcagta
601 acacattgga agtagactac ggcttcggcc aagatgtttc aagaaccaca
651 ggcactatct caatccctat ctttgatggt gaaaaataca aagaaacggc
701 ccgcgcatta gccgctatct tcagcaagaa aggcatgtca gtcgacgtca
751 cctcacagac tgtccaagaa actctcaaga actcagacct caccatcgcc
801 actgtcgcag ctggatatta cacagcctta gctgcgcgtc tcgaactaac
851 gaaagacgta agcgaggctg cccacacgat tccattcgtt accgctttat
901 cggatacatt ctcagcagca ctaaatgcac aacgtacaag ggatgtcata
951 tcttcttgct tacgttgtcc aaattccagg aatgctcaac gtgacatcgt
1001 aatcggtacg gttttatgga ataacgtttt tgttgagagc ctctccgaac
1051 acaacatggc ggttcccaat ccaaacgaca tatcattttt cattcggaac
1101 aatgctctca catcttcttg gtggtgcgct atttggctcc tcaatgcatt
1151 tcttcacagg ttaatcgcac ctactcgtat ccacatcttc attacacaag
1201 gagaaacata ccacctccct cctttcaccg attcggatgt ctacgaggcc
1251 gttcgtttct tgctcgcaat gtcaaagtca tcacggccaa tgccagagag
1301 cgtcgagagt atgttatatg catacggcac acagatgatc atccaaccac
1351 attcgctcta cacagaggga ggcttgatca gaagaatgat cattacagtt
1401 ccacaccttc cagctcatgg ttacttcgtc acgaattccg aattctcgag
1451 atacatgaat atcgctgttc cagacgacgg gcgttcagca aaagacttcg
1501 ttatcggtgc aggaacaggt ctcttacaaa tcgtactggc ttaccaagct
1551 gctttcagct gtgctggacc tattgctctt cactgccatg caaacgatgc
1601 tatctcccaa ggtatggaca gagtcgcaag catctacctt gaaggaagat
1651 acttcaccat tccaatggca gttaacgttg ctactaatgt cgctcaatac
1701 actacaatgg tcagacgcga tcctgaatac cgtcacacac ttgaccggat
1751 cttgcctcgc atattcggac catcgactga cacagtcttc gatttcatcg
1801 aatcaggaat tacgtcatct tgggtatcca ttgatgcccg caaacgcaac
1851 ggtcgtgcca gaaagttcag aacagctttc atcaaccgtt tccacgaccc
1901 agaattcgca tacatgttcg gtatcaccgg caacggtatc gagagaatgg
1951 aaggaaaagt tacttccaac atcgcccaag aagtcgatta tctcatgaac
2001 gccggcgacc ttcgcaattg cccaattctc cgcacactta aggcagcaga
2051 gagagaagaa acagtcactt tgatgtgcaa ggaaaaggtc ggctcactct
2101 acgccatcga cggaacagtt cgcgtattca aacggttcga aacaatcgat
2151 cttgcccagc ttggctggac ttcacatggt aaggtgatga aaccttatgc
2201 atttcgccct ccagtcattc aaggaatgac catctgcagt acagcgtaca
2251 catcaacggc catcgacatc atcacaacag tctttggtcc cttacgcctc
2301 cgcgtaggat ccctttttga gtaaagctgt acgttgtggc cccgtaatac
2351 catccgtcaa gcatcacttc aatatgaatt acgttagtat tctcaaacac
2401 aatggtaacg aatacacttt tgtcccagga tacggatggg tattacagga
2451 tgattatttg ttgaatgccg tcaaaatggt tggagaaggt gatctaccgc
2501 ccaatcaatt accttatgac gatgatcttt tatttacata cgcaaaaatt
2551 ttactttacg attacatatc tcattttcca gaattcagac acaagaatcc
2601 acgcttatta acaagtgaaa cagaactaca actcttcccg ctcaaggaaa
2651 actcagctgc caggactaaa gcaaatttct acgctaggac actatggaac
2701 gaaacaactt cggacaagtc agctttcaaa ccaggaactt acaatgacac
2751 agtcgcaggt ctattaatgt gccaacaatg tgctttgatg tggtctctac
2801 gcaagttaat tatcaacaag attattagcg gtgtttgtga tgcattaacc
2851 gaaaaggtct cactcaccct attaaaacgg atttctgatt ggttaaaaca
2901 actcgggtta gcctactcac ctatattccg tcttttcatt gaactcccta
2951 ctctattagg acgcggagca atcccaggcg atgctgcact agacatgaag
3001 cacagattaa cttacaaccc attgatgaca gtcgatgttc caaagacaca
3051 actacacgac ttaatttaca gacttctatc acgtaactac aacaatacaa
3101 aaattagcag tttcgagcac cacctagaag aacgtttact ttggtcaagg
3151 tctggaagtc actactaccc tgatgaacaa atcgatcagt tacttccccc
3201 acaacctacc agaaaagagt tcttagatat agtaacaata gactacatca
3251 aacaatgcaa acctcaagtt ttcatcagac agtcacgcaa actagagcac
3301 ggcaaggagc gattcattta caattgtgac acgatctcat atgtctattt
3351 tgattttgtc ctgaagctct tcgagtcagg atggcaagat agtgaagcaa
3401 tactgtcacc aggcgattac tcaagtgaat gtctccatgc taaaatctct
3451 ggttataagt acaaagctat gttggactac acagatttca attcgcaaca
3501 cacaatacaa agcatgcgtt tgatcttcga aaccatgaaa gagctactcc
3551 cacctgaagc atcttttgct cttgactggt gtatcgcctc gtttgacaac
3601 atgcaaaggt ctgatggtcg caagtggacc gccactctcc caagtggaca
3651 tcgtgctaca acttttatca atacagtatt aaattggtgt tacacacaga
3701 tggtcggtct caaattcgac agctttatgt gcgccggtga tgatgtcatc
3751 ttaatgtctc aagagcctat atcattaact ccgattctta catcacactt
3801 caagttcaat cctagtaagc agagtacagg tactagaggt gagttcttac
3851 gcaagcatta cactgaagaa ggcgtgtttg catacccatg tcgagcaatc
3901 cccagcttag taagtggaaa ttggttaagc gaaacactaa gagataacac
3951 cccaatggtg gtcgcaatac agaacggaat cgacagatta cgtagtagag
4001 caggtttact tggagttcct tggagtttag gcctctcaga gctcgttgag
4051 agagagggca tacctgagga agtcggcatg gctttactga attcacacgc
4101 ggcgggaccg ggtctcatca cacgcgatta cagttcattc acagttacac
4151 caaaaccacc taggataact agcacacttg attacacagc gacccgttat
4201 ggtgtccaag acttatgtaa tgacgtgcca tggaaacaac tcacagcaaa
4251 tgagtgcaat aagttaccac agcaaattaa gaaaatgagc cacaggcatt
4301 gtagccagac aaagataacc tacaaatgtg tctacgaagt ttttaaacct
4351 agtggacttc ctacggtgtt atccgaggtc agccagtcag gcttgtcgct
4401 ggtgtggtgg caagcaatgc ttaaggaagc aatgcaggac tactctacaa
4451 agaagaagga tgtacatatg tacgcttgta acgcatgtac aagctccgtt
4501 agcggagatg cgtttttacg agcgacatca aaaatggctg gtgttttaat
4551 cactagcttg atttcttctt cttcataacg tacagtagaa aagtctctag
4601 agttgctcaa gacttataat gagccagttt ggtctcacta taccttctcc
4651 attttac