Sequence of DPV Trichomonas vaginalis virus 2
Trichomonas vaginalis virus 2 isolate C76, complete genome.
ACC No: JF436870
Dated: 2011-12-16 | Length: 4689 | CRC: 1960033129
ID JF436870; SV 1; linear; genomic RNA; STD; VRL; 4689 BP.
XX
AC JF436870;
XX
DT 24-NOV-2011 (Rel. 110, Created)
DT 16-DEC-2011 (Rel. 111, Last updated, Version 2)
XX
DE Trichomonas vaginalis virus 2 isolate C76, complete genome.
XX
KW .
XX
OS Trichomonas vaginalis virus 2
OC Viruses; dsRNA viruses; Totiviridae; Trichomonasvirus.
XX
RN [1]
RP 1-4689
RX PUBMED; 22075038.
RA Fraga J., Rojas L., Sariego I., Fernandez-Calienes A.;
RT "Genetic characterization of three Cuban Trichomonas vaginalis virus.
RT Phylogeny of Totiviridae family";
RL Infect. Genet. Evol. 12(1):113-120(2012).
XX
RN [2]
RP 1-4689
RA Fraga J., Rojas L., Sariego I., Fernandez-Calienes A.;
RT ;
RL Submitted (25-FEB-2011) to the INSDC.
RL Parasitology, Instituto de Medicina Tropical Pedro Kouri, Autopista Novia
RL del Mediodia km 61/2. Aparartado Postal 601, La Habana 10300, Cuba
XX
FH Key Location/Qualifiers
FH
FT source 1. .4689
FT /organism="Trichomonas vaginalis virus 2"
FT /host="Trichomonas vaginalis"
FT /isolate="C76"
FT /mol_type="genomic RNA"
FT /country="Cuba"
FT /collection_date="Sep-1999"
FT /note="genotype: 2"
FT /db_xref="taxon:674954"
FT CDS join(305. .2317,2317. .4620)
FT /codon_start=1
FT /ribosomal_slippage
FT /product="RNA-dependent RNA polymerase"
FT /note="RdRp"
FT /protein_id="AET81014.1"
FT /translation="MASTLISSDISATLRIYSEVINNTNTSPPDNPMSDHSNPRLTKVL
FT DELSKLPCRNINEFRKMIRNFQPHFIQRRYGYRRNPLPRREDNFLWVVRNRIQSSVETQ
FT FLAATNSVPQQSLNLDISLTDESTSITPGSILGSIKMLENSHHFPAFKSMIQIFNARYG
FT GSFQDSAHLQSPQYPQLLAYLFGQLIAIKDRVDLFRPSNPLSLADALFGFTLAQNARPR
FT FDDHSYAKACQEPLVIPAASNSDCGACGFGQINANQPLTLPLGAWFFVNPETVNYQSFR
FT DFLWLSFATHQRMPNQMQNNWPCSLNIVSTCAAPGRQAPHAGELTDERVRLALDTGHRI
FT LLSMFNDDEETLRYYQRKGFETMFRPCWFYTEGGLLRKATRYVSGVPLNGLYYGDGATS
FT YVVSPIHTDAHPGITAAIESFVDIMVLQAVFSFSGPKVVGAKVNAGQIDAAMVGGPAVA
FT EGDGFVYDPLRPAPPLSAFFTEFIHRPAGQRIFQMAMSQIYPSHAPLGIANVINSIHFC
FT KTKIVNNKLRATFVRRPPRAPHLKADTAIINRFHDPELAYALGILADGIAPLDGSHEYN
FT VLDELDYLFNGGDIRNSFGLNALNTRGLGQIVHIRPKREPGKRPRRGFYTTLDGQVHPV
FT TQDAPLDEIYHWRDHGNLTRPYSCHILDSQGLEFADRFQRTVTRKDPCGRQLTPQDMRC
FT LPGPQLRAKAGQRHVERINQCGGSVIYPRLSTARACTKSAIDLMTKALAHQLWYLYKSS
FT DLLRQLPTMIPHSYKTFLVWLLRIDPHNEKSSIRHFPSQDNHEVITHSLRNLTKEQDFT
FT LFPIIDIVQAKGRVNGYGRNLLDGSPLPDFALQQMLLPNTANDVVCAILLLGVVLSMLR
FT SPISIIVNISRAICRNDSLLKDLSDFNKMLGLPRIPIANCLTELNTLQGRGVTSSDAKR
FT DLTHRRADVNPHVAKISRENLTEAINQIYKEEISRKELPDTFKQDVFTFPLWVKKGAHH
FT HPLFGSYDNRLELVENLELDRVLKSQAAVYITQAPKLEHGKTRFIYNCDTVSYIFFDYI
FT LNYIESVWSKKHVLLNPDYMNPVIFSTLNYDEFCMLDYTDFNSQHSIESMKQVFLFLFP
FT FLLWSMHSILRGCVTSFDNMYINKTHWNSTLPSGHRATTFINSVLNRAYNLPFLQVANA
FT FHTGDDVLLCGKADYATLINTVPYELNKTKQSFGPSAEFLRLHKHNDQVSGYAARAISS
FT LVSGNWLSFANPLWQGSLLSIMQQNYTRSAWSGLLPYIPVSMKKEVQRRNDLRSRITNG
FT LFSGDIVPSGCPCYKSNAAILSAVVPDTVVKAPPTFFDLRTLDILKQTSPWINTASRYM
FT DLLEGRHKESDNKNVIYSIQYLPSKMLPMIDVDPADATGLRKRYHGRSHIAHPLPRDGH
FT LKEFRFATCRVGPATALRLGGLWPANRINLIKPVYV"
FT CDS 305. .2440
FT /codon_start=1
FT /product="capsid protein"
FT /protein_id="AET81013.1"
FT /translation="MASTLISSDISATLRIYSEVINNTNTSPPDNPMSDHSNPRLTKVL
FT DELSKLPCRNINEFRKMIRNFQPHFIQRRYGYRRNPLPRREDNFLWVVRNRIQSSVETQ
FT FLAATNSVPQQSLNLDISLTDESTSITPGSILGSIKMLENSHHFPAFKSMIQIFNARYG
FT GSFQDSAHLQSPQYPQLLAYLFGQLIAIKDRVDLFRPSNPLSLADALFGFTLAQNARPR
FT FDDHSYAKACQEPLVIPAASNSDCGACGFGQINANQPLTLPLGAWFFVNPETVNYQSFR
FT DFLWLSFATHQRMPNQMQNNWPCSLNIVSTCAAPGRQAPHAGELTDERVRLALDTGHRI
FT LLSMFNDDEETLRYYQRKGFETMFRPCWFYTEGGLLRKATRYVSGVPLNGLYYGDGATS
FT YVVSPIHTDAHPGITAAIESFVDIMVLQAVFSFSGPKVVGAKVNAGQIDAAMVGGPAVA
FT EGDGFVYDPLRPAPPLSAFFTEFIHRPAGQRIFQMAMSQIYPSHAPLGIANVINSIHFC
FT KTKIVNNKLRATFVRRPPRAPHLKADTAIINRFHDPELAYALGILADGIAPLDGSHEYN
FT VLDELDYLFNGGDIRNSFGLNALNTRGLGQIVHIRPKREPGKRPRRGFYTTLDGQVHPV
FT TQDAPLDEIYHWRDHGNLTRPYSCHILDSQGLEFADVSNGRSRGKILVVVNSPLKTCAA
FT YQGPSFAPKPGSAMWNE"
XX
SQ Sequence 4689 BP; 1283 A; 1224 C; 932 G; 1250 T; 0 other;
jf436870 Length: 4689 16-DEC-2011 Type: N Check: 8925 ..
1 gttgtgtggc ttagaaggag tgaccacctt taaagcgcag gcgtaatcag
51 cctggtcaga aactcctggg caccatcagg agacggatcg gtatcgcgtt
101 ctggatgtca gtgtcaatag ccttgtgcgc catggatacg gggttcacta
151 ttacgcgaga aggtcccccg cgaactctgg actgtttatt cggatttaat
201 acagtactct gaatagctag ccttatgcat atgacgtgtt gtgagagggc
251 ttatttgtgg ctttcatact agtattgtgt gattgtctac atttaattac
301 gataatggct tcgaccctaa tatcgtctga tatttctgcc acattacgca
351 tttatagtga agttatcaac aacacaaata cttcaccacc cgacaatcca
401 atgagtgacc actcaaatcc ccggttaaca aaggttctag atgagttgtc
451 caaattacca tgtcgtaata taaacgaatt tagaaaaatg attagaaatt
501 ttcaaccaca ttttatacaa cgtcgctacg gataccgtcg aaatcctttg
551 cctcgcagag aagataattt cttatgggtc gtaagaaatc gtatccagag
601 ctccgtcgag actcaatttc ttgctgctac aaatagtgtt cctcaacaaa
651 gtcttaatct agacatttct ttaacggatg aatcaacttc tattactcca
701 gggtcaattc ttggctcgat caagatgctc gaaaattctc atcacttccc
751 agcattcaaa agtatgatac agatcttcaa cgctcgttat ggaggctctt
801 ttcaagactc tgcccatctc cagtccccac agtatccaca acttctcgct
851 tacttattcg gccagctaat cgcgattaag gatcgggtcg atctcttcag
901 gccatcaaat ccactttctc tcgctgacgc tttgttcggc ttcacattag
951 ctcaaaacgc tcgcccacgt ttcgacgacc acagttacgc taaagcatgc
1001 caagaacccc tcgttattcc agcagcttct aatagtgact gcggtgcctg
1051 cggcttcgga cagatcaacg caaatcaacc cctcactctc cctcttggcg
1101 cttggttttt cgtcaatcca gaaacagtta attatcaatc attccgagat
1151 ttcctctggc tcagcttcgc aacacaccag cgcatgccaa atcaaatgca
1201 gaacaattgg ccgtgttctc tcaacatcgt ttcaacatgt gcggctcctg
1251 gtcgtcaagc ccctcacgcc ggtgaactca ctgatgagag ggtcagactc
1301 gcccttgata caggccaccg cattttgctt tctatgttca atgatgatga
1351 agaaactctc cgttattatc aacgcaaagg attcgaaaca atgttcagac
1401 catgctggtt ctacactgaa ggcggcttac tcagaaaggc taccagatac
1451 gtttcaggtg tcccactcaa cggcctatat tatggtgatg gtgcgacctc
1501 atacgttgtc tccccaatcc ataccgatgc gcatcctgga attacagcag
1551 ctatcgaatc cttcgtcgac attatggtct tacaagcagt cttctccttt
1601 tccggtccca aagttgtcgg tgctaaagtc aatgccggcc aaatcgatgc
1651 agctatggtc ggcggccccg ctgtcgctga aggagacggc ttcgtctacg
1701 acccactccg tccagcacct ccactttccg cgttctttac cgaattcatc
1751 cacagaccag ccgggcaacg catcttccag atggcgatga gccaaatcta
1801 cccatcacat gctcctctcg gtattgccaa cgtcatcaac tccattcact
1851 tctgcaagac aaagatcgtt aacaacaaat tacgcgccac tttcgttcgt
1901 cgcccaccgc gcgcccctca tctcaaggcc gatactgcta tcatcaaccg
1951 cttccacgat ccggaactcg cctacgctct cggaatcctc gccgatggca
2001 ttgctcctct cgatggctcc cacgagtaca atgtccttga tgaactcgac
2051 tacttattca atggtggcga cattcgcaat tccttcggcc tcaacgccct
2101 caacacccga ggtttgggcc aaatcgttca catccggcca aaacgcgagc
2151 cgggaaaaag acctcgccgc ggtttctaca ccacactcga tggacaggtt
2201 caccctgtta cacaagatgc tccactcgat gagatttacc attggcgcga
2251 ccatggaaat ctcacacgtc catattcgtg ccacatcctc gacagtcaag
2301 gactcgagtt tgctgacgtt tccaacggac ggtcacgcgg aaagatcctt
2351 gtggtcgtca actcacccct caagacatgc gctgcctacc agggccccag
2401 cttcgcgcca aagccgggca gcgccatgtg gaacgaataa accaatgcgg
2451 gggcagcgtc atctatccgc gcttgagcac tgctcgcgcc tgcaccaagt
2501 ctgccattga tttgatgacg aaggccctcg cacaccaact gtggtaccta
2551 tataagtctt cagacttact ccgacagttg cccaccatga taccacattc
2601 ctacaaaaca tttcttgttt ggctactcag aatcgaccct cacaatgaaa
2651 aaagctcaat tcgtcacttc ccaagtcaag acaatcatga agtcattaca
2701 cacagtctaa gaaaccttac taaagaacaa gatttcacac tgtttccaat
2751 cattgacata gtccaagcta agggtcgcgt gaatggttac gggcgaaatc
2801 ttctggatgg ttcaccgctg ccagattttg ccctacaaca gatgctgtta
2851 ccaaatactg caaatgatgt agtctgtgca atcttgctac tcggtgtagt
2901 attgtcgatg cttcgcagcc caatctcaat catcgttaac atttcacgtg
2951 ctatatgtcg caatgatagt ttattgaagg atttatctga tttcaataag
3001 atgttaggct taccaaggat acctatagct aactgcttaa cagaattgaa
3051 tactttacaa ggtcgtggag taacttcaag cgatgccaaa agagacttga
3101 cccaccgaag ggccgatgtc aatcctcatg tggcgaaaat aagtagagag
3151 aatctcacgg aagcaatcaa tcaaatatac aaggaagaaa ttagtaggaa
3201 ggaacttcct gatacgttca aacaagatgt attcacattt cctttatggg
3251 ttaagaaagg tgctcaccat catccactat ttgggtctta tgacaatcgg
3301 ctggagttag ttgagaatct agagttagac agggtgttaa aatcacaggc
3351 tgctgtctat atcacgcaag cgccgaaact tgaacatggt aagactcgat
3401 tcatttacaa ttgcgataca gtcagttaca ttttttttga ttacattttg
3451 aattatatcg agagtgtctg gtctaaaaaa catgtgctcc tgaatcctga
3501 ttacatgaac ccagtcatct tcagtactct taactatgac gaattctgca
3551 tgttagatta cactgacttc aactcacagc actccatcga aagcatgaaa
3601 caggtgtttt tatttctttt tcccttcctg ctgtggtcta tgcactctat
3651 tttacgtggg tgcgtcacgt ctttcgacaa tatgtatatc aacaagactc
3701 attggaattc cacactaccg tcaggacata gagcgacaac attcattaat
3751 tctgtcctga acagggctta taatcttcca tttctacaag tcgctaacgc
3801 gttccataca ggcgacgatg tactgttatg cggaaaggca gactacgcca
3851 cacttatcaa cactgtacct tacgaactca acaagactaa gcaatcattc
3901 ggaccctcgg ctgaatttct gcgacttcac aaacacaacg accaagtctc
3951 tggttacgcg gcacgtgcaa ttagcagtct cgtaagcggc aactggttgt
4001 cattcgccaa cccactatgg caagggtcgc tactgtcaat tatgcaacaa
4051 aattacacac gatcggcttg gtcaggtctg ttaccatata ttcctgtatc
4101 aatgaagaaa gaagtccagc ggcgaaatga tttgcgttca cgaattacca
4151 acggattgtt ctctggtgat atagttccaa gcggttgccc ttgttataag
4201 tcaaatgcgg caatactaag cgcagtagtt cctgacactg tagtaaaggc
4251 tccccccacc ttttttgact tacgtacatt ggatatccta aagcaaacat
4301 caccttggat caatacagcg tccagatata tggacctcct ggaaggacga
4351 cataaggaat ctgacaataa aaatgttata tatagtatcc aatacctacc
4401 atctaagatg ctaccaatga tagatgttga ccctgcagac gctaccggat
4451 tacgaaaacg gtatcacgga cgttctcaca tcgcacaccc actcccacga
4501 gatggtcatc ttaaggaatt tagatttgca acgtgcagag tcggcccggc
4551 tactgcgtta agattaggag ggctttggcc tgcgaataga atcaacctaa
4601 tcaagccagt ctacgtttaa gtaagactga caatttctta cataactact
4651 cggttagagt tggtgagtaa tatcaactct tacgtcaac