Sequence of DPV Trichomonas vaginalis virus 2
Trichomonas vaginalis virus 2 isolate C351, complete genome.
ACC No: JF436871
Dated: 2011-12-16 | Length: 4686 | CRC: -1468178805
ID JF436871; SV 1; linear; genomic RNA; STD; VRL; 4686 BP.
XX
AC JF436871;
XX
DT 24-NOV-2011 (Rel. 110, Created)
DT 16-DEC-2011 (Rel. 111, Last updated, Version 2)
XX
DE Trichomonas vaginalis virus 2 isolate C351, complete genome.
XX
KW .
XX
OS Trichomonas vaginalis virus 2
OC Viruses; dsRNA viruses; Totiviridae; Trichomonasvirus.
XX
RN [1]
RP 1-4686
RX PUBMED; 22075038.
RA Fraga J., Rojas L., Sariego I., Fernandez-Calienes A.;
RT "Genetic characterization of three Cuban Trichomonas vaginalis virus.
RT Phylogeny of Totiviridae family";
RL Infect. Genet. Evol. 12(1):113-120(2012).
XX
RN [2]
RP 1-4686
RA Fraga J., Rojas L., Sariego I., Fernandez-Calienes A.;
RT ;
RL Submitted (25-FEB-2011) to the INSDC.
RL Parasitology, Instituto de Medicina Tropical Pedro Kouri, Autopista Novia
RL del Mediodia km 61/2. Aparartado Postal 601, La Habana 10300, Cuba
XX
FH Key Location/Qualifiers
FH
FT source 1. .4686
FT /organism="Trichomonas vaginalis virus 2"
FT /host="Trichomonas vaginalis"
FT /isolate="C351"
FT /mol_type="genomic RNA"
FT /country="Cuba"
FT /collection_date="Mar-2000"
FT /note="genotype: 2"
FT /db_xref="taxon:674954"
FT CDS join(305. .2314,2314. .4617)
FT /codon_start=1
FT /ribosomal_slippage
FT /product="RNA-dependent RNA polymerase"
FT /note="RdRp"
FT /protein_id="AET81016.1"
FT /translation="MASTLLSSDKSATLGKDTEVINMPNSSPPDNPSWDHSFPGLTMVL
FT DDMSKNPFVNINEIRSVIRNFQRQMILPRTGIRPDAQPRTVDSFEGVVNRIQCTVETQL
FT VGATYTVLQETQNHDKSFTEDSTTITPASIPPSISLLDKSRHNRSILRIIQNFKANYLG
FT YLLDTPQLQTPQYPQLLAYLFGQLIAIWDRLDLLRPSCPLSLADALNGFTLAQYARPRY
FT DDHRHAWACQGPLVIPAASNSDCGPCGFVQIKANQGQTLPLGACHFVNPERVNDQSFQE
FT FLWLIFATHHRMPNQMQNNWPFSLNIVSTCAAPDRQAPHAGELTEERVRLARDTGHRIL
FT LSKKNDDEETLRYYQLKGIETMFRPCCLYTEGGLLRKATRYVSMVPLNGLYYYNGATSY
FT VVSSIVTDAHPGITSAIESFVDIMVLQAVFSFSGPKVVAAKVNARKIDAAMVFGPAVAE
FT VDGFVYDPLLPAPPLSAFYTEFIHRPAELRIFQRAMSQIYGSHAPLIIANVINSIHNCK
FT TKIVNNKLRATFVRRPPGAPHLISDTAIINRFHDPELAYALGILADGIAPLDGSHEYNV
FT LDELDYLYNGGDIRNCFGLNALNTRGLGQIVHIRPKREPGKRPRRGFYTTLDGQVHPVT
FT QDAPLDEIYHWRDHGNLTRPYSCHILDSQGLEFADRFQRTVTRKDPCGRLLTGQDMRCL
FT PGPQLRAKAGQRHVERINQCGGSVIYPRLSTARACSLSAIDMMTLALAYQLCYLYKSTD
FT LHRQLDTMIPQSYLTFLEWLLSFDPHNVKSSIRHFPSQDFHEVITHSLSFLTKEQEITL
FT FPIKDIVQANRRVNAYARNLLDASPLPDGALQLMLLPNTANDVVCAILLLGDVLWMLRC
FT PISIIVNISRAICGNDSFLKVLSDFNKMLGLTKIPLANCLTELNTLQGRGVTSCDGKSD
FT FTYLIADVNPHDSKISRENLREAMYQICKEEITRKEVFDSFKQHVFTSGYWSKKGAHHH
FT PLFGSYDNVLECVENVDLDRVLKSHRAVYITQAPKLEHGKTRFIYNCDTVSYIYFDYNL
FT NYIENVWSNIHVLLKTFYMFGVVFSRLNYDEYCMLDYTDFNSQHSIESMKQVFLCLFPF
FT LPRSMHSILQWCVTSFDNMYMNKTHWGSTLPSGHRATTFINSVLNRAYLLPFLQVCNAF
FT HTPDDVLLCGKADYRTLIKTVPYELFKTKQSFGPSPEFLRLHKHNDLVSGYPARAKSRC
FT VSPNWLSFAFPLWQPSLLSCMQQLYTISARSGLKPYIPVTLKLGVQRRYDLRSRITNGL
FT FSGDIVPSGCPCYKSNAALLSAVDPDTVVKAPPTFYDLRTLHILKHSSPWINSASTYMD
FT LLERRHMQSDNKNVIYSIQYVPSKMLPLIDVDPADATPLRKRYHPRSHIAQGLPRDAHL
FT KELTFATCRVRPATARRLGSLWPAKTIFVMMPVYV"
FT CDS 305. .2437
FT /codon_start=1
FT /product="capsid protein"
FT /protein_id="AET81015.1"
FT /translation="MASTLLSSDKSATLGKDTEVINMPNSSPPDNPSWDHSFPGLTMVL
FT DDMSKNPFVNINEIRSVIRNFQRQMILPRTGIRPDAQPRTVDSFEGVVNRIQCTVETQL
FT VGATYTVLQETQNHDKSFTEDSTTITPASIPPSISLLDKSRHNRSILRIIQNFKANYLG
FT YLLDTPQLQTPQYPQLLAYLFGQLIAIWDRLDLLRPSCPLSLADALNGFTLAQYARPRY
FT DDHRHAWACQGPLVIPAASNSDCGPCGFVQIKANQGQTLPLGACHFVNPERVNDQSFQE
FT FLWLIFATHHRMPNQMQNNWPFSLNIVSTCAAPDRQAPHAGELTEERVRLARDTGHRIL
FT LSKKNDDEETLRYYQLKGIETMFRPCCLYTEGGLLRKATRYVSMVPLNGLYYYNGATSY
FT VVSSIVTDAHPGITSAIESFVDIMVLQAVFSFSGPKVVAAKVNARKIDAAMVFGPAVAE
FT VDGFVYDPLLPAPPLSAFYTEFIHRPAELRIFQRAMSQIYGSHAPLIIANVINSIHNCK
FT TKIVNNKLRATFVRRPPGAPHLISDTAIINRFHDPELAYALGILADGIAPLDGSHEYNV
FT LDELDYLYNGGDIRNCFGLNALNTRGLGQIVHIRPKREPGKRPRRGFYTTLDGQVHPVT
FT QDAPLDEIYHWRDHGNLTRPYSCHILDSQGLEFADVSNGRSRGKILVDVFSPVKTCAAY
FT QGPSFAPKPGSAMWNE"
XX
SQ Sequence 4686 BP; 1269 A; 1230 C; 916 G; 1271 T; 0 other;
jf436871 Length: 4686 16-DEC-2011 Type: N Check: 604 ..
1 gttgtgtggc tttgatggag tgacgaccaa aaaagcccag gcctattcag
51 cctccacaga cactcctggg gtccatcagg agacggatcg ataacgcgaa
101 ctccatgtct gtgtcaatag ccatgtgcgc catcgatact tggtacactt
151 aaacgggaga aggtgccccg cgaactctgg acagtttatt cggattttaa
201 accgtactct gaattgctag ccttatgcaa atgacgtgta ctgagagggc
251 ttatttgtgg ctttcatact agtattgtgt gattgtctac atttaattac
301 gataatggct tcgacgcttt tatcgtctga taaatctgcg acgttaggca
351 aagatactga agttatcaac atgccaaata gttcaccacc cgacaatcca
401 tcttgggacc actcatttcc ggggttaaca atggttctag atgacatgtc
451 caaaaatcct tttgttaata taaacgaaat aagaagtgtg attagaaatt
501 ttcaacgtca aatgattcta cctcgcaccg gaatccgtcc agatgcccag
551 ccacgcacag ttgattcttt cgagggggtc gttaatcgta tccaatgcac
601 cgtcgagact caattagttg gtgcaactta taccgttctt caagaaactc
651 aaaatcatga taaatcattt actgaggatt ctactactat aactccagct
701 tcaattccac cctcaatctc attgctcgat aaatcgcgtc acaaccgatc
751 aatcctaaga atcatccaga acttcaaggc taattattta ggctatttac
801 tagacactcc ccagctgcag accccacagt atccacaact tctcgcttac
851 ttattcggcc agctaatcgc gatttgggat cgcctcgatc tcttgaggcc
901 atcatgtcca ctttctctcg ctgacgcttt gaacggcttc actttagctc
951 aatacgcccg cccacgttac gacgaccaca gacacgcttg ggcatgccaa
1001 ggtcccctcg ttattccagc agctagtaat agtgactgcg gtccctgcgg
1051 cttcgtacag atcaaggcaa atcaaggcca gactctccct cttggcgctt
1101 gtcatttcgt caatccagaa agagttaatg atcaatcttt ccaagaattc
1151 ctctggctca tcttcgcaac acaccaccgc atgccaaatc aaatgcagaa
1201 caattggccg ttttctctca acatcgtttc aacatgtgcg gctcctgatc
1251 gtcaagcccc tcacgccggg gaactcactg aggagagggt cagactcgcc
1301 cgtgatacag gccaccgcat tttgctttct aagaagaatg atgatgaaga
1351 aactctccgt tattatcaac tcaaaggaat cgaaacaatg ttcagaccat
1401 gctgcctcta cactgagggc ggcttactca gaaaggctac cagatacgtt
1451 tcaatggtcc cactcaacgg cctatattat tacaatggtg cgacctcata
1501 cgttgtctcg tcaatcgtta ccgatgcgca tcctggaatt acttcagcta
1551 tcgaatcctt cgtcgacatt atggtcttac aagcagtctt ctccttttcc
1601 gggcccaaag ttgtcgctgc taaagtcaat gccagaaaaa tcgatgcggc
1651 tatggtcttc ggccccgctg tcgctgaagt tgacggcttc gtctacgacc
1701 cactccttcc agcacctcca ctttccgcgt tctacaccga attcatccac
1751 agaccagccg aattacgcat cttccagagg gcgatgagcc aaatctacgg
1801 atcacatgct cctctcatca ttgccaacgt catcaactcc attcacaact
1851 gcaagacaaa gatcgttaac aacaaattac gcgccacttt cgttcgtcgc
1901 ccacccggcg cccctcatct catttccgat actgctatca tcaaccgctt
1951 ccacgatcca gaactcgcct acgcactcgg aatcctcgcc gatggcattg
2001 ctcctctcga tggctcgcac gagtacaatg tccttgatga actcgactac
2051 ttatacaatg gtggcgacat tcgcaattgc ttcggcctca acgccctcaa
2101 cacccgtggt ttgggccaaa tcgttcacat ccggccaaaa cgcgagccgg
2151 gaaaaagacc tcgccgcggt ttctacacca cactcgatgg acaggttcac
2201 cctgttacac aagatgctcc actcgatgag atttaccatt ggcgcgacca
2251 tggaaatctc acacgtccat attcgtgcca catcctcgac agtcaaggac
2301 tcgagtttgc tgacgtttcc aacggacggt cacgcggaaa gatccttgtg
2351 gacgtcttct caccggtcaa gacatgcgct gcctaccagg gccccagctt
2401 cgcgccaaag ccgggcagcg ccatgtggaa cgaataaacc aatgcggggg
2451 cagcgtcatc tatccgcgct tgagcactgc tcgcgcctgc agcttgtctg
2501 ccattgatat gatgacgttg gccctcgctt accaactgtg ctacctatat
2551 aagtcaacag acttacaccg acagttggac accatgatac cacaatccta
2601 cttaacattt cttgaatggc tactcagttt cgaccctcac aatgttaaaa
2651 gctcaattcg tcacttccca agtcaagact ttcatgaagt cattacacac
2701 agtctaagtt tccttactaa ggaacaagaa atcacactgt ttccaatcaa
2751 agacatagtc caagctaacc gtcgcgtgaa tgcttacgcc cgaaatcttc
2801 tcgatgcttc accgcttcca gatggtgccc tacaactgat gctcttacca
2851 aatacagcaa atgatgtagt gtgtgcaatc ttactactcg gtgatgtatt
2901 gtggatgctt cgctgcccaa tttcaatcat cgtgaacatt tcacgtgcaa
2951 tatgtggcaa tgatagtttt ttgaaggttt tatctgactt caataagatg
3001 ttaggcttaa ccaagatacc tttagctaac tgcttaactg aattgaatac
3051 tttacaaggt cgtggagtaa cttcttgcga tggcaaaagt gactttacct
3101 acctaattgc cgatgtcaat cctcatgatt cgaaaataag tagagagaat
3151 ctcagagaag caatgtatca aatatgtaag gaagaaatta ctaggaagga
3201 agtttttgat tcgttcaaac aacatgtatt cacatctggt tattggtcca
3251 agaaaggtgc acaccatcat ccactttttg ggtcttatga caatgtgctg
3301 gagtgtgttg agaatgtaga cttagacagg gtcttaaaat cacaccgtgc
3351 tgtctatatc acgcaagccc cgaaactaga acatggtaag actcgattca
3401 tttacaattg cgatacagtc agttacattt actttgatta caatttgaat
3451 tatatcgaga atgtctggtc taatattcat gtgctcctga aaacttttta
3501 catgttcgga gtggtcttca gtaggcttaa ctatgacgaa tactgcatgt
3551 tagattatac tgacttcaac tcacagcatt ccatcgaaag catgaaacag
3601 gtgtttttat gtctttttcc cttcctgcca aggtctatgc actctatttt
3651 acaatggtgc gtcacgtcat tcgacaatat gtatatgaac aagactcatt
3701 ggggttccac actaccgtct ggccatagag cgacaacatt tattaattct
3751 gtgctcaaca gggcttattt acttccattt ctacaagtgt gtaacgcgtt
3801 ccatacaccc gacgatgtac tgttatgcgg aaaggcagac taccgcacac
3851 ttatcaagac tgtaccttac gaactcttca agactaagca atcattcgga
3901 ccctcgcctg aatttctccg acttcacaaa cacaacgacc tggtctctgg
3951 ttacccggca cgtgcaaaaa gcaggtgcgt aagccccaac tggttgtcat
4001 tcgcctttcc actatggcaa ccttcgctac tgtcatgtat gcaacaattg
4051 tacacgatat cggcaaggtc aggtctgaaa ccatatattc ctgtaacttt
4101 gaagttaggt gtccagcggc gttatgattt gcgttcacga attaccaacg
4151 gattgttctc tggtgatata gttccaagcg gttgcccttg ttataagtca
4201 aatgcggctt tacttagcgc agtagatcct gacactgtag taaaggctcc
4251 ccccaccttt tatgacttac gtacattgca tatcctaaag cattcatcac
4301 cttggatcaa ttcagcgtcc acatatatgg acctcctgga acgacgacat
4351 atgcaatctg acaataaaaa tgttatatat agtatccaat acgtaccatc
4401 taagatgcta cctttgattg atgttgaccc tgcagacgct accccattac
4451 gaaaacggta tcaccctcgt tctcacatcg cacagggact cccacgagat
4501 gcccatctta aggaattaac atttgcaacg tgcagagtgc gcccggctac
4551 tgcgagaaga ttaggatccc tttggcctgc gaaaacaatc ttcgtaatga
4601 tgccagtcta cgtttaagta agactgacaa aatcaaacat aactactcgg
4651 ttagtgtagg atagtaatat caactcttac gtcaac