Sequence of DPV Tomato leaf curl Palampur virus
Tomato leaf curl Palampur virus isolate IR:Jir:K1P:Squ:09, complete genome.
ACC No: JF501727
Dated: 2012-03-05 | Length: 2756 | CRC: 1744291442
ID JF501727; SV 1; circular; genomic DNA; STD; VRL; 2756 BP. XX AC JF501727; XX DT 05-MAR-2012 (Rel. 112, Created) DT 05-MAR-2012 (Rel. 112, Last updated, Version 1) XX DE Tomato leaf curl Palampur virus isolate IR:Jir:K1P:Squ:09, complete genome. XX KW . XX OS Tomato leaf curl Palampur virus OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus; OC unclassified Begomovirus. XX RN [1] RP 1-2756 RA Heydarnejad J., Hessari M., Varsani A., Massumi H.; RT "Incidence and natural hosts of Tomato leaf curl Palampur virus in Iran"; RL Unpublished. XX RN [2] RP 1-2756 RA Heydarnejad J., Hessari M., Varsani A., Massumi H.; RT ; RL Submitted (06-MAR-2011) to the INSDC. RL Plant Protection, Shahid Bahonar University of Kerman, 22 Bahman Ave, RL Kerman, Kerman 7616914111, Iran XX FH Key Location/Qualifiers FH FT source 1. .2756 FT /organism="Tomato leaf curl Palampur virus" FT /host="Cucurbita pepo" FT /isolate="IR:Jir:K1P:Squ:09" FT /mol_type="genomic DNA" FT /country="Iran:Jiroft, Kerman" FT /collected_by="S. Alavi" FT /collection_date="2009" FT /clone="K1P" FT /db_xref="taxon:526476" FT gene 120. .467 FT /gene="AV2" FT CDS 120. .467 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /protein_id="AFC37754.1" FT /translation="MWDPLVHEFPESVHGLRCMLAVKYLKEIEKTYSPDTIGYDLVRDL FT ISVVRARNYGEASSRYLHFNARIESTPSSELRQPVCCPCSCPYCPRHKGKGMGEQTHEP FT ETKILPDVSKL" FT gene 280. .1050 FT /gene="AV1" FT CDS 280. .1050 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /protein_id="AFC37755.1" FT /translation="MVKRPADIYISTPASKARRRLNFDSPYAVRAAVPIVRATKAREWV FT NRPMNRKPRFYRMYRSSDVPRGCEGPCKVQSFESWHDVSHIGKVMCITDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGAPQDFGDVFNMFDNEP FT STATVKNVHRDRYQVLKKWHSTVTGGTYASKEQALVRRFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHHSNPVYATLKIRIYFYDSVTN" FT gene complement(1047. .1457) FT /gene="AC3" FT CDS complement(1047. .1457) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /protein_id="AFC37756.1" FT /translation="MITDSRTGEYITADRAESGVYIWDVPNPLYFKILKHDERPCLTNL FT DIITVQIQFNHNLRKALGLHKCFLTFQIWTGLRPQTGRFLRVFRTQVLKYLDMLGVVGI FT NNVIRAAYHVLDNVLQRTVDVWATYDVKLNTY" FT gene complement(1177. .1596) FT /gene="AC2" FT CDS complement(1177. .1596) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /protein_id="AFC37757.1" FT /translation="MQSSLHSRDHSIPVEKTSLPKKKKKNIRRRRVDLQCGCSYYISIN FT CHDHGFTHRGIHHCGSSREWRVYLGRSKSPVFQNFETRRETLPHEPRHYNSPNTVQPQP FT EESTGASQVFSNIPDLDGLTPSDWAFLESFQNPGP" FT gene complement(1499. .2602) FT /gene="AC1" FT CDS complement(1499. .2602) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /protein_id="AFC37758.1" FT /translation="MAPPTRFRINAKNYFLTYPKCSLTKEEALSQLQNLETPTSKKFIK FT VCRELHEDGSPHIHVLIQFEGKFQCKTNRFFDLVAPSRSAHFRPNVQGAKSASDVKKYI FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYAQAINTGNKEDALKVLKELAPKDYVLQFH FT NLMTNLDRIFPSRIEVYRSPFNVSSFDRVPPELVDWVSSNLRCSAARPVSTALPIRPIG FT LVLEGDSRTGKTMWARSLGLHNYLCGHLDLNPRVYSNDALYNVIDDVDPHYLKHFKEFM FT GAQRDWQSNTKYGKPIMIKGGIPTIFLCNKGPQSSYKEFLDEEKNAALKQWALKNAVFI FT TLEGPLYSGRENVAPQEEEEEHPQETS" FT gene complement(2269. .2445) FT /gene="AC4" FT CDS complement(2269. .2445) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /protein_id="AFC37759.1" FT /translation="MGLRIFMFSSNLKENSSAKLTDSSTWLPQVGQHISVRTFRELNQR FT QMSRNTSTKTETY" XX SQ Sequence 2756 BP; 733 A; 590 C; 610 G; 823 T; 0 other; jf501727 Length: 2756 05-MAR-2012 Type: N Check: 8474 .. 1 accgaatggc cgcggtggct tttgtgtggg tccagaacca atgaaattcg 51 agatacatgg ctaatttaat gcatggggac caataaatag acttgcgcac 101 caagattgga tccacaaaca tgtgggatcc attagtgcac gaatttcctg 151 aaagcgttca tggtcttagg tgcatgctag ctgtaaaata tctcaaagag 201 attgaaaaga cctattctcc ggacacaatc ggatacgatc ttgttcgtga 251 cctaatctct gtcgtccgtg cgagaaacta tggtgaagcg tccagcagat 301 atctacattt caacgcccgc atcgaaagca cgccgtcgtc tgaacttcga 351 cagcccgtat gctgtccgtg cagctgtccc tattgtccgc gccacaaagg 401 caagggaatg ggtgaacaga cccatgaacc ggaaaccaag attttaccgg 451 atgtatcgaa gctctgacgt gcccaggggc tgtgaaggcc catgtaaggt 501 tcaatctttt gagtcctggc acgatgtctc tcatattggt aaagtcatgt 551 gtattaccga cgttacccgt ggaaccggtc tcacacatcg cgttggaaaa 601 cgattttgtg tgaagtcagt ctacgttctg ggtaagatct ggatggatga 651 gaatattaag accaagaacc acacgaatag tgtgatgttt ttcttggtgc 701 gtgatcgtcg acctacgggt gcgcctcaag atttcggcga tgtgttcaat 751 atgttcgaca atgaacctag cactgctact gtgaagaatg tgcatcgtga 801 tcgatatcaa gttctcaaaa aatggcattc gactgtgacg ggaggaacat 851 acgcttcgaa ggaacaagca ttagttagac gttttgttag ggttaataat 901 tatgttgtct ataatcaaca agaggccggc aagtatgaga atcatactga 951 aaatgcatta atgttgtata tggcctgtac tcatcattca aatcctgtgt 1001 atgcgacttt aaaaatccgg atctattttt acgattcggt gacaaattaa 1051 tatgtattaa gttttacatc atatgttgcc catacatcaa ctgttctttg 1101 caatacattg tctaatacat gataagctgc tcttattaca ttattaattc 1151 caacaacacc taacatatcc aggtacttaa ggacctgggt tctgaaaact 1201 ctcaagaaac gcccagtctg agggcgtaag cccgtccaga tctggaatgt 1251 tagaaaacac ttgtgaagcc ccagtgcttt cctcaggttg tggttgaact 1301 gtatttggac tgttataatg tcgaggttcg tgaggcaagg tctctcgtcg 1351 tgtttcaaaa ttttgaaata caggggattt ggaacgtccc agatatacac 1401 gccactctct gctcgatccg cagtgatgta ttcccctgtg cgtgaatccg 1451 tgatcatggc agttgatcga tatgtaatac gaacaaccac actgcaaatc 1501 aactcgtctc ctgcggatgt tcttcttctt cttcttgggg agcgacgttt 1551 tctcgaccgg aatagagtgg tccctcgagt gtaatgaaga ctgcattctt 1601 caatgcccac tgtttcagtg ctgcattctt ttcttcgtct aagaattctt 1651 tatagctgct ttgtggtcct ttattgcaca agaagatagt gggaatgccg 1701 cctttaatca ttatcggctt tccgtatttt gtgttgcttt gccagtcacg 1751 ctgggccccc atgaattctt taaaatgctt tagataatgg ggatcaacgt 1801 catcaatgac gttgtataag gcgtcgttac tgtaaaccct agggtttaga 1851 tccaagtgac cgcataagta attgtggagt cccaaactac gcgcccacat 1901 agtttttccc gtacgactat cgccctccaa tactaaccct atgggtctaa 1951 ttgggagcgc agtggaaaca ggccgcgcag cggaacacct cagatttgac 2001 gacacccaat cgacgagttc tggcggaact ctgtcgaagg acgaaacatt 2051 aaatggcgaa cgataaactt caattcgtga cggaaagatc cgatctaaat 2101 tcgtcattaa attatgaaac tgcaacacat aatcttttgg tgctaattct 2151 tttagcacct ttaatgcatc ctctttattt ccagtattaa ttgcttgtgc 2201 gtaagcatcg ttagctgttt gttgaccccc acgagcagat cgtccgtcga 2251 tctgaaaaac accccactct agtacgtctc cgtctttgtc gatgtatttc 2301 ttgacatctg acgctgattt agctccctga acgttcggac ggaaatgtgc 2351 tgaccgactt ggggcaacca agtcgaagaa tctgttagtt ttgcactgga 2401 attttccttc aaattggatg agaacatgaa tatgcggaga cccatcttcg 2451 tgaagctctc tgcagacttt tatgaatttc tttgatgtag gggtttctag 2501 gttttgtaat tgggaaagtg cctcttcttt agttagagag cactttggat 2551 atgtaaggaa atagtttttt gcatttattc tgaaacgagt tggcggagcc 2601 atagacctcg aatttccaac cggtgtctct caacttcttg tattatattg 2651 gtgtctgggg tcctatatat acataagacc cttaatggca atattgtaat 2701 tttagggata aaattacttt aattcaaact cttatagcgg ccattcgtat 2751 aatatt