Sequence of DPV Tomato leaf curl Palampur virus
Tomato leaf curl Palampur virus isolate IR:Jir:K1P:Squ:09, complete genome.
ACC No: JF501727
Dated: 2012-03-05 | Length: 2756 | CRC: 1744291442
ID JF501727; SV 1; circular; genomic DNA; STD; VRL; 2756 BP.
XX
AC JF501727;
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DT 05-MAR-2012 (Rel. 112, Created)
DT 05-MAR-2012 (Rel. 112, Last updated, Version 1)
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DE Tomato leaf curl Palampur virus isolate IR:Jir:K1P:Squ:09, complete genome.
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KW .
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OS Tomato leaf curl Palampur virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2756
RA Heydarnejad J., Hessari M., Varsani A., Massumi H.;
RT "Incidence and natural hosts of Tomato leaf curl Palampur virus in Iran";
RL Unpublished.
XX
RN [2]
RP 1-2756
RA Heydarnejad J., Hessari M., Varsani A., Massumi H.;
RT ;
RL Submitted (06-MAR-2011) to the INSDC.
RL Plant Protection, Shahid Bahonar University of Kerman, 22 Bahman Ave,
RL Kerman, Kerman 7616914111, Iran
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FH Key Location/Qualifiers
FH
FT source 1. .2756
FT /organism="Tomato leaf curl Palampur virus"
FT /host="Cucurbita pepo"
FT /isolate="IR:Jir:K1P:Squ:09"
FT /mol_type="genomic DNA"
FT /country="Iran:Jiroft, Kerman"
FT /collected_by="S. Alavi"
FT /collection_date="2009"
FT /clone="K1P"
FT /db_xref="taxon:526476"
FT gene 120. .467
FT /gene="AV2"
FT CDS 120. .467
FT /codon_start=1
FT /gene="AV2"
FT /product="pre-coat protein"
FT /protein_id="AFC37754.1"
FT /translation="MWDPLVHEFPESVHGLRCMLAVKYLKEIEKTYSPDTIGYDLVRDL
FT ISVVRARNYGEASSRYLHFNARIESTPSSELRQPVCCPCSCPYCPRHKGKGMGEQTHEP
FT ETKILPDVSKL"
FT gene 280. .1050
FT /gene="AV1"
FT CDS 280. .1050
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="AFC37755.1"
FT /translation="MVKRPADIYISTPASKARRRLNFDSPYAVRAAVPIVRATKAREWV
FT NRPMNRKPRFYRMYRSSDVPRGCEGPCKVQSFESWHDVSHIGKVMCITDVTRGTGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGAPQDFGDVFNMFDNEP
FT STATVKNVHRDRYQVLKKWHSTVTGGTYASKEQALVRRFVRVNNYVVYNQQEAGKYENH
FT TENALMLYMACTHHSNPVYATLKIRIYFYDSVTN"
FT gene complement(1047. .1457)
FT /gene="AC3"
FT CDS complement(1047. .1457)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer protein"
FT /protein_id="AFC37756.1"
FT /translation="MITDSRTGEYITADRAESGVYIWDVPNPLYFKILKHDERPCLTNL
FT DIITVQIQFNHNLRKALGLHKCFLTFQIWTGLRPQTGRFLRVFRTQVLKYLDMLGVVGI
FT NNVIRAAYHVLDNVLQRTVDVWATYDVKLNTY"
FT gene complement(1177. .1596)
FT /gene="AC2"
FT CDS complement(1177. .1596)
FT /codon_start=1
FT /gene="AC2"
FT /product="AC2 protein"
FT /protein_id="AFC37757.1"
FT /translation="MQSSLHSRDHSIPVEKTSLPKKKKKNIRRRRVDLQCGCSYYISIN
FT CHDHGFTHRGIHHCGSSREWRVYLGRSKSPVFQNFETRRETLPHEPRHYNSPNTVQPQP
FT EESTGASQVFSNIPDLDGLTPSDWAFLESFQNPGP"
FT gene complement(1499. .2602)
FT /gene="AC1"
FT CDS complement(1499. .2602)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication-associated protein"
FT /protein_id="AFC37758.1"
FT /translation="MAPPTRFRINAKNYFLTYPKCSLTKEEALSQLQNLETPTSKKFIK
FT VCRELHEDGSPHIHVLIQFEGKFQCKTNRFFDLVAPSRSAHFRPNVQGAKSASDVKKYI
FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYAQAINTGNKEDALKVLKELAPKDYVLQFH
FT NLMTNLDRIFPSRIEVYRSPFNVSSFDRVPPELVDWVSSNLRCSAARPVSTALPIRPIG
FT LVLEGDSRTGKTMWARSLGLHNYLCGHLDLNPRVYSNDALYNVIDDVDPHYLKHFKEFM
FT GAQRDWQSNTKYGKPIMIKGGIPTIFLCNKGPQSSYKEFLDEEKNAALKQWALKNAVFI
FT TLEGPLYSGRENVAPQEEEEEHPQETS"
FT gene complement(2269. .2445)
FT /gene="AC4"
FT CDS complement(2269. .2445)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /protein_id="AFC37759.1"
FT /translation="MGLRIFMFSSNLKENSSAKLTDSSTWLPQVGQHISVRTFRELNQR
FT QMSRNTSTKTETY"
XX
SQ Sequence 2756 BP; 733 A; 590 C; 610 G; 823 T; 0 other;
jf501727 Length: 2756 05-MAR-2012 Type: N Check: 8474 ..
1 accgaatggc cgcggtggct tttgtgtggg tccagaacca atgaaattcg
51 agatacatgg ctaatttaat gcatggggac caataaatag acttgcgcac
101 caagattgga tccacaaaca tgtgggatcc attagtgcac gaatttcctg
151 aaagcgttca tggtcttagg tgcatgctag ctgtaaaata tctcaaagag
201 attgaaaaga cctattctcc ggacacaatc ggatacgatc ttgttcgtga
251 cctaatctct gtcgtccgtg cgagaaacta tggtgaagcg tccagcagat
301 atctacattt caacgcccgc atcgaaagca cgccgtcgtc tgaacttcga
351 cagcccgtat gctgtccgtg cagctgtccc tattgtccgc gccacaaagg
401 caagggaatg ggtgaacaga cccatgaacc ggaaaccaag attttaccgg
451 atgtatcgaa gctctgacgt gcccaggggc tgtgaaggcc catgtaaggt
501 tcaatctttt gagtcctggc acgatgtctc tcatattggt aaagtcatgt
551 gtattaccga cgttacccgt ggaaccggtc tcacacatcg cgttggaaaa
601 cgattttgtg tgaagtcagt ctacgttctg ggtaagatct ggatggatga
651 gaatattaag accaagaacc acacgaatag tgtgatgttt ttcttggtgc
701 gtgatcgtcg acctacgggt gcgcctcaag atttcggcga tgtgttcaat
751 atgttcgaca atgaacctag cactgctact gtgaagaatg tgcatcgtga
801 tcgatatcaa gttctcaaaa aatggcattc gactgtgacg ggaggaacat
851 acgcttcgaa ggaacaagca ttagttagac gttttgttag ggttaataat
901 tatgttgtct ataatcaaca agaggccggc aagtatgaga atcatactga
951 aaatgcatta atgttgtata tggcctgtac tcatcattca aatcctgtgt
1001 atgcgacttt aaaaatccgg atctattttt acgattcggt gacaaattaa
1051 tatgtattaa gttttacatc atatgttgcc catacatcaa ctgttctttg
1101 caatacattg tctaatacat gataagctgc tcttattaca ttattaattc
1151 caacaacacc taacatatcc aggtacttaa ggacctgggt tctgaaaact
1201 ctcaagaaac gcccagtctg agggcgtaag cccgtccaga tctggaatgt
1251 tagaaaacac ttgtgaagcc ccagtgcttt cctcaggttg tggttgaact
1301 gtatttggac tgttataatg tcgaggttcg tgaggcaagg tctctcgtcg
1351 tgtttcaaaa ttttgaaata caggggattt ggaacgtccc agatatacac
1401 gccactctct gctcgatccg cagtgatgta ttcccctgtg cgtgaatccg
1451 tgatcatggc agttgatcga tatgtaatac gaacaaccac actgcaaatc
1501 aactcgtctc ctgcggatgt tcttcttctt cttcttgggg agcgacgttt
1551 tctcgaccgg aatagagtgg tccctcgagt gtaatgaaga ctgcattctt
1601 caatgcccac tgtttcagtg ctgcattctt ttcttcgtct aagaattctt
1651 tatagctgct ttgtggtcct ttattgcaca agaagatagt gggaatgccg
1701 cctttaatca ttatcggctt tccgtatttt gtgttgcttt gccagtcacg
1751 ctgggccccc atgaattctt taaaatgctt tagataatgg ggatcaacgt
1801 catcaatgac gttgtataag gcgtcgttac tgtaaaccct agggtttaga
1851 tccaagtgac cgcataagta attgtggagt cccaaactac gcgcccacat
1901 agtttttccc gtacgactat cgccctccaa tactaaccct atgggtctaa
1951 ttgggagcgc agtggaaaca ggccgcgcag cggaacacct cagatttgac
2001 gacacccaat cgacgagttc tggcggaact ctgtcgaagg acgaaacatt
2051 aaatggcgaa cgataaactt caattcgtga cggaaagatc cgatctaaat
2101 tcgtcattaa attatgaaac tgcaacacat aatcttttgg tgctaattct
2151 tttagcacct ttaatgcatc ctctttattt ccagtattaa ttgcttgtgc
2201 gtaagcatcg ttagctgttt gttgaccccc acgagcagat cgtccgtcga
2251 tctgaaaaac accccactct agtacgtctc cgtctttgtc gatgtatttc
2301 ttgacatctg acgctgattt agctccctga acgttcggac ggaaatgtgc
2351 tgaccgactt ggggcaacca agtcgaagaa tctgttagtt ttgcactgga
2401 attttccttc aaattggatg agaacatgaa tatgcggaga cccatcttcg
2451 tgaagctctc tgcagacttt tatgaatttc tttgatgtag gggtttctag
2501 gttttgtaat tgggaaagtg cctcttcttt agttagagag cactttggat
2551 atgtaaggaa atagtttttt gcatttattc tgaaacgagt tggcggagcc
2601 atagacctcg aatttccaac cggtgtctct caacttcttg tattatattg
2651 gtgtctgggg tcctatatat acataagacc cttaatggca atattgtaat
2701 tttagggata aaattacttt aattcaaact cttatagcgg ccattcgtat
2751 aatatt