Sequence of DPV Cotton leaf curl Multan virus
Cotton leaf curl Rajasthan virus isolate In:Abohar1:2010 segment DNA A, complete sequence.
ACC No: JF502361
Dated: 2012-05-04 | Length: 2753 | CRC: -282181405
ID JF502361; SV 1; circular; genomic DNA; STD; VRL; 2753 BP.
XX
AC JF502361;
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DT 28-FEB-2012 (Rel. 111, Created)
DT 04-MAY-2012 (Rel. 112, Last updated, Version 2)
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DE Cotton leaf curl Rajasthan virus isolate In:Abohar1:2010 segment DNA A,
DE complete sequence.
XX
KW .
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OS Cotton leaf curl Rajasthan virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2753
RX PUBMED; 22307170.
RA Rajagopalan P.A., Naik A., Katturi P., Kurulekar M., Kankanallu R.S.,
RA Anandalakshmi R.;
RT "Dominance of resistance-breaking cotton leaf curl Burewala virus (CLCuBuV)
RT in northwestern India";
RL Arch. Virol. 157(5):855-868(2012).
XX
RN [2]
RP 1-2753
RA Katturi P., Naik A.S., Rajagopalan P.A., Kankanallu R.S., Anandalakshmi R.;
RT ;
RL Submitted (05-MAR-2011) to the INSDC.
RL Plant-Virus Interactions Lab, Maharashtra Hybrid Seeds Co Ltd, Jalna -
RL Aurangabad road, Jalna, Maharashtra 431 203, India
XX
FH Key Location/Qualifiers
FH
FT source 1. .2753
FT /organism="Cotton leaf curl Rajasthan virus"
FT /segment="DNA A"
FT /host="cotton"
FT /isolate="In:Abohar1:2010"
FT /mol_type="genomic DNA"
FT /country="India"
FT /collection_date="14-Sep-2010"
FT /note="PCR_primers=fwd_name: CBVs-C1For-2533-2569,
FT rev_name: CBVs-V1Rev-528-494"
FT /db_xref="taxon:223259"
FT gene 131. .487
FT /gene="V2"
FT CDS 131. .487
FT /codon_start=1
FT /gene="V2"
FT /product="pre coat protein"
FT /protein_id="AFB81511.1"
FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYELIRDL
FT ICILRSRNYVEASCRYCHFYPRVETTPAFELRQPIHQPCCGSHCPRHKKTRMDKQAYRQ
FT EAQDVHDVQKSRCS"
FT gene 291. .1067
FT /gene="V1"
FT CDS 291. .1067
FT /codon_start=1
FT /gene="V1"
FT /product="coat protein"
FT /protein_id="AFB81512.1"
FT /translation="MSKRAADIVISTPASRLPRRLNFGSPFTNRAVAPIVHVTKKHAWT
FT NKPIDRKHRMYTMYRSPDVPRRCEGPCKVQSFESRHDIQHIGKVMCISDVTRGTGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT STAAVKNIHRDRYQVLRKWYATVTGRQYASKEQALAKKFVRVNNYVVYNQQEAGKYENH
FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTNLY"
FT gene complement(1064. .1468)
FT /gene="C3"
FT CDS complement(1064. .1468)
FT /codon_start=1
FT /gene="C3"
FT /product="replication enhancer protein"
FT /protein_id="AFB81515.1"
FT /translation="MDSRIGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTTNMDI
FT LTIRIQFNYNTRKALGLHKCFLTFRIWTTLQPQTGLFLRVFKTQVLQFLNNLGVISINL
FT GIKAVEHVLYNVIQQTMYVDQYSEIKFKLH"
FT gene complement(1161. .1613)
FT /gene="C2"
FT CDS complement(1161. .1613)
FT /codon_start=1
FT /gene="C2"
FT /product="transcription activator protein"
FT /protein_id="AFB81514.1"
FT /translation="MRSSSHLIDPCTRVPIKVQHREAKRRSRRRRVDLECGCSYYLSIN
FT CHNHGFTHRGTHHCSSSREWRIYLGGSKSPLFQDHQPRQPSIHDEYGHTHDQDPVQLQH
FT SESSGTAQVFSNIPYLDDLTASDWSFLKGIQNPSPPISEQSRCNFN"
FT gene complement(1510. .2598)
FT /gene="C1"
FT CDS complement(1510. .2598)
FT /codon_start=1
FT /gene="C1"
FT /product="replication associated protein"
FT /protein_id="AFB81513.1"
FT /translation="MPPKRNGIYSKNYFITYPKCSLTKEEALSQLLNIQTPTSKKYIRI
FT CRELHEDGTPHLHVLIQFEGKFKCQNMRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYIE
FT KDGDILDWGQFQIDGRSARGGHHTANDACAAALNAGNKSGALKVIKGLALKVFVLQFYN
FT LNANIDRIFQEPPAPYVSPFSSFFFDQFTERLEIWATENVVSAVQRPIRPISIVIDGAS
FT RTGKTMWARSLGPHNYMGGHLEMSPMIYSNEAWFNVIDDVAPHYPKHFKEFKGAQREWQ
FT SNTKSGKPVKIKGGIPTIFLCNQGPSSSYKEFFAEEKNSALKKWALKNAIFITLDRPMY
FT SGTNQSTAQGSEEAEQEEESRS"
FT gene complement(2142. .2444)
FT /gene="C4"
FT CDS complement(2142. .2444)
FT /codon_start=1
FT /gene="C4"
FT /product="C4 protein"
FT /protein_id="AFB81516.1"
FT /translation="MGLLTCMFSSSSKGNSSARICDSSTWSPQAGQHISIRTYRELNPA
FT PTSNPTSRRTGTFSTGGNFRSTEDQQEEGTTQPMTLAQQHLTREISRGLLKSLRD"
XX
SQ Sequence 2753 BP; 746 A; 552 C; 613 G; 842 T; 0 other;
jf502361 Length: 2753 04-MAY-2012 Type: N Check: 2256 ..
1 accggatggc cgcgcgattt ttttgtgggc cttaccatta acacttgtcg
51 gccaatcata tgactccctc aaagctaaat aacgctcccg cacactataa
101 gtacttgcgc actaagtttc aaattcaaac atgtgggatc cactattaaa
151 cgaattccct gatacggttc acgggtttcg gtgtatgctt tctgtgaaat
201 atttgcaact tttgtcgcag gattattcac cggatacgct tgggtacgag
251 ttaatacggg atttaatttg tattttacgc tcccgtaatt atgtcgaagc
301 gagctgccga tattgtcatt tctacccccg cgtcgagact accccggcgt
351 ttgaacttcg gcagcccatt caccaaccgt gctgtggctc ccattgtcca
401 cgtcacaaaa aaacacgcat ggacaaacaa gcctatcgac aggaagcaca
451 ggatgtacac gatgtacaga agtccagatg ttcctaggag atgtgaaggt
501 ccatgtaagg ttcagtcgtt tgagtccaga catgatattc agcatatagg
551 taaagtaatg tgtattagtg atgttactcg tggtactggg ctgacccata
601 gagttggtaa gagattttgt gtcaagtctg tttatgtgtt gggtaagata
651 tggatggatg agaacattaa gacgaagaat cacacgaata gtgtgatgtt
701 tttcttggtt agagatcgta gacctgttga taaacctcaa gattttggag
751 aggtatttaa tatgtttgat aatgaaccca gtacggcggc tgtgaagaat
801 attcatcgtg ataggtatca agttctgcgc aaatggtatg caactgtcac
851 cggtagacaa tacgcttcaa aggaacaggc tttggccaag aagtttgtca
901 gagttaacaa ttatgttgtt tacaatcaac aggaagcagg aaaatacgag
951 aatcatacgg aaaatgcgtt aatgctttat atggcttgta ctcacgctag
1001 caaccctgtt tatgctacgt tgaagattag gatatatttt tatgactctg
1051 taacgaattt atattaatga agtttgaatt ttatttctga atattgatct
1101 acatacatag tttgttggat tacattgtac aatacatgtt ctacagcttt
1151 aatacctaaa ttaattgaaa ttacaccgag attgttcaga aattggagga
1201 cttgggtttt gaataccctt aagaaaagac cagtctgagg ctgtaaggtc
1251 gtccagatac ggaatgttag aaaacacttg tgcagtccca gagctttccg
1301 agtgttgtag ttgaactgga tcctgatcgt gagtatgtcc atattcgtcg
1351 tgaatggacg gttgacgtgg ctgatgatct tgaaataaag gggatttgga
1401 acctcccaga tatatgcgcc attccctgct tgagctgcag tgatgggttc
1451 ccctatgcgt gaatccatgg ttgtggcagt tgattgacag ataataagaa
1501 cacccgcatt caagatctac tctcctcctc ctgctccgcc tcttcgcttc
1551 cctgtgctgt actttgattg gtacccgagt acatgggtct atcaagtgtg
1601 atgaagatcg cattctttaa agcccacttt tttagtgctg aattcttctc
1651 ttctgcaaaa aactctttat agcttgagga ggggccttga ttgcagagga
1701 agatagtggg aatcccgcct ttaattttaa ctggcttccc ggattttgta
1751 tttgattgcc actctctttg ggcccccttg aactccttaa agtgttttgg
1801 gtaatgcggg gcgacgtcat ctattacgtt aaaccaggct tcattactgt
1851 aaatcattgg gctcatttct agatgtccac ccatataatt atgtggacct
1901 aatgatctgg cccacatcgt cttccccgtc ctactggcac cgtcaatcac
1951 tatacttata ggtctaatgg gacgctgaac ggcactgacg acgttctcgg
2001 tagcccaaat ttcaagtctt tctgtaaatt gatcaaaaaa aaatgaggaa
2051 aaaggagaaa catatggagc tggtggctcc tgaaagattc tgtctatatt
2101 tgcatttaaa ttataaaatt gcagtacaaa aaccttaaga gctagtccct
2151 taatgacttt aagagccccc gacttatttc ccgcgttaag tgctgctgcg
2201 caagcgtcat tggctgtgtg gtgccctcct cttgctgatc ttccgtcgat
2251 ctgaaattgc ccccagtcga gaatgtcccc gtccttctcg atgtaggatt
2301 tgacgtcgga gctggattta gctccctgta tgttcggatg gaaatgtgct
2351 gacctgcttg gggagaccaa gtcgaagaat cgcatattct ggcacttgaa
2401 tttcccttcg aactggatga gaacatgcaa gtgaggagtc ccatcttcgt
2451 gaagctctct gcagattcta atatattttt ttgaagttgg ggtttgtata
2501 tttaataatt gggaaagtgc ttcctctttg gtgagagaac atttgggata
2551 agtgatgaaa tagtttttgg aataaatacc gttccgcttt ggaggcatgt
2601 tgactaaaat tgatcaccga ttgaccgctc ttgcaactct ccccggtata
2651 tcggtgatca atatatagtg atcaccaaat ggcataatgg taataaaaaa
2701 actttaattt gaaattcaaa ccaaaaggct aaagcggcca tccgtttaat
2751 att