Sequence of DPV Bean golden mosaic virus

Bean golden mosaic virus isolate BgV03A.1.C14 segment DNA-A, complete sequence.

ACC No: JF694450

Dated: 2012-03-25 | Length: 2616 | CRC: 632314518

                
ID   JF694450; SV 1; circular; genomic DNA; STD; VRL; 2616 BP.
XX
AC   JF694450;
XX
DT   02-JAN-2012 (Rel. 111, Created)
DT   25-MAR-2012 (Rel. 112, Last updated, Version 2)
XX
DE   Bean golden mosaic virus isolate BgV03A.1.C14 segment DNA-A, complete
DE   sequence.
XX
KW   .
XX
OS   Bean golden mosaic virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2616
RX   PUBMED; 22397740.
RA   Wyant P.S., Strohmeier S., Schafer B., Krenz B., Assuncao I.P., Lima G.S.,
RA   Jeske H.;
RT   "Circular DNA genomics (circomics) exemplified for geminiviruses in bean
RT   crops and weeds of northeastern Brazil";
RL   Virology 427(2):151-157(2012).
XX
RN   [2]
RP   1-2616
RA   Wyant P.S., Strohmeier S., Schaefer B., Krenz B., Assuncao I.P.,
RA   Lima G.S.A., Jeske H.;
RT   ;
RL   Submitted (15-MAR-2011) to the INSDC.
RL   Molecular Biology and Plant Virology, University of Stuttgart,
RL   Pfaffenwaldring 57, Stuttgart, Baden-Wurttenberg 70550, Germany
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2616
FT                   /organism="Bean golden mosaic virus"
FT                   /segment="DNA-A"
FT                   /host="Phaseolus sp."
FT                   /isolate="BgV03A.1.C14"
FT                   /mol_type="genomic DNA"
FT                   /country="Brazil:Alagoas"
FT                   /db_xref="taxon:10839"
FT   gene            200. .955
FT                   /gene="AV1"
FT   CDS             200. .955
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:G9CLR6"
FT                   /db_xref="UniProtKB/TrEMBL:G9CLR6"
FT                   /protein_id="AEI91321.1"
FT                   /translation="MVKRDAPWRHMAGTAKISRSTNYSPRSGNGSRYNKAAEWVNRPMY
FT                   RKPRIYRTLRGPDVPRGCEGPCKVQSYEQRHDVSHVGKVMCVSDVTRGNGITHRVGKRF
FT                   CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV
FT                   KNDLRDRFQVMHKFYGKVTGGQYASNEQALVKRFWKVNNYVVYNHQEAGKYENHTENAL
FT                   LLYMACTHASNPVYATLKIRIYFYDSITN"
FT   gene            complement(952. .1350)
FT                   /gene="AC3"
FT   CDS             complement(952. .1350)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="replication enhancer"
FT                   /db_xref="UniProtKB/TrEMBL:G9CLT7"
FT                   /protein_id="AEI91324.1"
FT                   /translation="MDSRTGERITARQAENGVYIWEISNPLYFKMYNVEDPLHTTTRIY
FT                   HIQIRFNHNLRNKLGLHKAFLNFQVWTISLQASGTTYLNRFKYLVLLYLDRIGVISLNN
FT                   IIRAVRFATDKSYVNYVIENHEIKYKFY"
FT   gene            complement(1097. .1486)
FT                   /gene="AC2"
FT   CDS             complement(1097. .1486)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="transcriptional regulator"
FT                   /db_xref="UniProtKB/TrEMBL:G9CLR3"
FT                   /protein_id="AEI91323.1"
FT                   /translation="MRNSSSSTPPSIKVQHRAAKKRAIRRRRVDLECGCTIYVHINCSG
FT                   HGFTHRGTHHCTSSREWRVYLGDIKSPLFQDVQRRGSTSHNDQNIPHTNTVQPQPQEQT
FT                   GSTQGFPEFPSLDDISSSFWDDIFK"
FT   gene            complement(1398. .2483)
FT                   /gene="AC1"
FT   CDS             complement(1398. .2483)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="replication associated protein"
FT                   /db_xref="UniProtKB/TrEMBL:G9CLT4"
FT                   /protein_id="AEI91322.1"
FT                   /translation="MPPPKRFKISAKNYFLTFPQCSITKECALEQLQHIQTPVNKKYIR
FT                   ICKELHDNGEPHLHALIQFEGKFQCTNCRFFDLKHPITSSVSHANIQSAKSSSDVKSYI
FT                   EKDGDYIEWGAFQIDGRSARGGQKTGNDAASEALNASSKEEAMQIIKEKLPEKFLFQYH
FT                   NLSSNLDRIFTPAPEPWSPPFHLSSFTNVPKEMQEWADDYFGRGAAARPERPISIIVEG
FT                   DSRTGKTMWARALGSHNYLSGHLDFNSKVFSNHAEYNVIDDIAPHYLKLKHWKELIGAQ
FT                   KDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKCFLDKEENAALKNWTLHNAKFIFLD
FT                   SPLYQSSTQSCEETSNQTTSS"
FT   gene            complement(2069. .2326)
FT                   /gene="AC4"
FT   CDS             complement(2069. .2326)
FT                   /codon_start=1
FT                   /gene="AC4"
FT                   /product="AC4 protein"
FT                   /db_xref="UniProtKB/TrEMBL:G9CLT5"
FT                   /protein_id="AEI91325.1"
FT                   /translation="MGNHICMHLFNSKESSSARIADSSTSNIQSHLPSPMPIYRVQNHP
FT                   LMSSPTSRRTVITSNGVLFKSTEDLLEEVRRQVMMQHQRH"
XX
SQ   Sequence 2616 BP; 693 A; 513 C; 588 G; 822 T; 0 other;

jf694450 Length: 2616  25-MAR-2012  Type: N  Check: 9374  ..

       1  accggatggc cgcccgattt ttttggggta catctcttat tgggcctcat
      51  gggcctcctt ttaatttaaa ttaaagtaaa gttattggac tgtccaatca
     101  ataccgttgt gtcgagccta tttatttttt ccaacttggc ccccaagttg
     151  actaacggct ataaatttaa attaaaactc acaacctctt taactcaaaa
     201  tggttaagcg cgatgcccca tggcgccaca tggcaggtac ggccaagatt
     251  agccgctcga ccaattattc tccacgtagt ggaaatgggt cgaggtacaa
     301  taaggccgct gagtgggtca acaggcccat gtacagaaag cccaggatat
     351  atcgaactct acgcggccct gatgttccta gaggttgcga aggcccatgc
     401  aaagtccagt cttatgaaca acgacatgat gtttctcatg ttggtaaggt
     451  tatgtgtgta tccgacgtga caagaggtaa tggtattacc catcgtgtgg
     501  gaaaacgttt ttgtgttaag tctgtttata ttttaggtaa gatatggatg
     551  gacgagaata tcaagttgaa gaatcacacg aatagtgtga tgttttggtt
     601  agtcagagat cgtagaccgt atggcactcc tatggacttt ggacaagttt
     651  ttaatatgtt cgacaatgaa cccagtacag ctactgttaa gaacgatctt
     701  cgtgatcgtt ttcaagttat gcataaattc tatggaaagg tgacaggtgg
     751  acaatatgct agcaacgagc aggcattggt taaacgtttt tggaaggtga
     801  ataattatgt agtgtacaac catcaagaag cagggaaata cgagaatcat
     851  acggagaacg ctttattatt gtatatggca tgtactcatg cctcaaatcc
     901  tgtgtatgct actctaaaaa ttcggatcta tttttatgat tcgatcacca
     951  attaataaaa tttatatttt atttcatgat tctcaattac ataatttaca
    1001  tatgatttgt ctgttgcgaa acgtacagct ctgataatat tgttaagcga
    1051  aataacacct attctatcta aatataataa cactagatat ttaaatctat
    1101  ttaaatatgt cgtcccagaa gcttgaagag atatcgtcca gacttggaaa
    1151  ttcaggaaag ccttgtgtag acccagtttg ttcctgaggt tgtggttgaa
    1201  ccgtatttgt atgtggtata ttctggtcgt tgtgtgaagt ggatcctcta
    1251  cgttgtacat cttgaaataa aggggatttg atatctccca aatatacacg
    1301  ccattctctg cttgacgtgc agtgatgcgt tcccctgtgc gtgaatccat
    1351  gtcccgagca atttatgtgc acgtaaattg tgcagccgca ctctaaatca
    1401  actcgacgtc gtctgattgc tcgtttcttc gcagctctgt gttgaacttt
    1451  gatagagggg ggagtcgagg aagatgaatt tcgcattatg gagtgtccag
    1501  tttttgagag ctgcgttttc ctctttgtcg aggaaacatt tataactggc
    1551  cccttcacct ggattgcaaa gcacgattga tgggattcca cctttaattt
    1601  gaacgggttt cccgtatttg cagtttgatt gccagtcctt ttgagcccca
    1651  atcaattcct tccagtgctt taactttaga tagtgcggtg cgatgtcatc
    1701  aatgacgtta tactcagcat gatttgaaaa cacctttgag ttgaaatcca
    1751  ggtgaccact tagataattg tgggacccta atgcacgtgc ccacattgtc
    1801  ttccccgttc gtgaatcacc ttctacgatg atactaatag gtctttccgg
    1851  ccgcgcagcg gcacctctcc cgaaataatc atcagcccac tcttgcatct
    1901  ccttgggcac attagtgaat gaggagaggt gaaacggagg agaccacggc
    1951  tccggagctg gtgtaaaaat cctatccaga ttgctagaga ggttatgata
    2001  ttggaagaga aacttttccg gcagtttctc ttttattatt tgcatggctt
    2051  cttcttttga agaagcattc agtgcctctg atgctgcatc attacctgtc
    2101  ttctgacctc ctctagcaga tcttccgtcg atttgaaaag caccccattc
    2151  gatgtaatca ccgtccttct cgatgtagga cttgacatca gaggatgatt
    2201  ttgcactctg tatattggca tgggagacgg aagatgtgat tggatgtttg
    2251  aggtcgaaga atctgcaatt cgtgcactgg aactttcctt cgaattgaat
    2301  aagtgcatgc agatgtggtt ccccattatc gtgcaattct ttgcagattc
    2351  tgatgtattt cttgttgacg ggtgtttgta tgtgttgaag ttgctcaagt
    2401  gcacactctt ttgtaatgga gcattgtgga aatgtgagga aataattctt
    2451  agcgcttatc ttgaaacgct tcggtggtgg catacttgta aataagtgtg
    2501  tgtaccccga ttgagctctc gctcataagt ctctatgaat tggggtaaag
    2551  gggacaatat atagtataag ttcctaaggg cttaagggac acgtgtaggc
    2601  catccgttat aatatt