Sequence of DPV Sweet potato leaf curl China virus

Sweet potato leaf curl China virus isolate SPLCCNV-ZJ, complete genome.

ACC No: JF736657

Dated: 2012-06-13 | Length: 2790 | CRC: 1979621120

                
ID   JF736657; SV 1; circular; genomic DNA; STD; VRL; 2790 BP.
XX
AC   JF736657;
XX
DT   25-JUL-2011 (Rel. 109, Created)
DT   13-JUN-2012 (Rel. 113, Last updated, Version 4)
XX
DE   Sweet potato leaf curl China virus isolate SPLCCNV-ZJ, complete genome.
XX
KW   .
XX
OS   Sweet potato leaf curl China virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC   unclassified Begomovirus.
XX
RN   [1]
RP   1-2790
RX   DOI; 10.1007/s00705-011-1194-6.
RX   PUBMED; 22179901.
RA   Bi H., Zhang P.;
RT   "Molecular characterization of two sweepoviruses from China and evaluation
RT   of the infectivity of cloned SPLCV-JS in Nicotiana benthamiana";
RL   Arch. Virol. 157(3):441-454(2012).
XX
RN   [2]
RP   1-2790
RA   Bi H., Zhang P.;
RT   ;
RL   Submitted (28-MAR-2011) to the INSDC.
RL   SIBS-ETH Shanghai Center for Cassava Biotechnology, Institute of Plant
RL   Physiology & Ecology, Shanghai Institutes for Biological Sciences, CAS, 300
RL   Fenglin Road, Shanghai, Shanghai 200032, China
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2790
FT                   /organism="Sweet potato leaf curl China virus"
FT                   /host="sweet potato"
FT                   /isolate="SPLCCNV-ZJ"
FT                   /mol_type="genomic DNA"
FT                   /country="China:Zhejiang"
FT                   /isolation_source="leaf"
FT                   /collected_by="Huiping Bi"
FT                   /collection_date="20-Apr-2010"
FT                   /db_xref="taxon:1198219"
FT   misc_feature    join(2646. .2790,1. .97)
FT                   /note="common region"
FT   gene            98. .442
FT                   /gene="AV2"
FT   CDS             98. .442
FT                   /codon_start=1
FT                   /gene="AV2"
FT                   /product="precoat protein AV2"
FT                   /db_xref="GOA:G1C5E7"
FT                   /db_xref="InterPro:IPR002511"
FT                   /db_xref="UniProtKB/TrEMBL:G1C5E7"
FT                   /protein_id="AEK48995.1"
FT                   /translation="MDLWDPLQNPLPDTLYGFRCMLSVKYLQSILKKYEPGTLGWSTLE
FT                   DELIRILRVKQYGRANSRFSEISSLWGETGKTEAELRDSYRALHWECCPNCCPKLCPGF
FT                   SKRPDEEKEG"
FT   gene            267. .1031
FT                   /gene="AV1"
FT   CDS             267. .1031
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="coat protein AV1"
FT                   /db_xref="GOA:G1C5E8"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:G1C5E8"
FT                   /protein_id="AEK48994.1"
FT                   /translation="MVGRIPVSRRFHPYGGRPVRRRLNFETAIVPYTGNAVPIAARSYV
FT                   PVSRSVQMKRRKGDRIPKGCVGPCKVQDYEFKMDVPHSGTFVCVSDFTRGTGLTHRLGK
FT                   RVCVKSMGIDGKVWMDDNVAKRDHTNIITYWLIRDRRPNKDPLTFSQAFTMFDNEPTTA
FT                   KIRMDLRDRMQVLKKFSVTVSGGPYNHKEQALVRKFFKGLYNHVTYNHKEEAKYENHLE
FT                   NALMLYSASSHASNPVYQTLRCRAYFYDSHNN"
FT   gene            complement(1048. .1482)
FT                   /gene="AC3"
FT   CDS             complement(1048. .1482)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="replication enhancer protein"
FT                   /db_xref="GOA:Q19PW4"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:Q19PW4"
FT                   /protein_id="AEK48992.1"
FT                   /translation="MDSRTGESLSHAQTMRAVEFFDNPMSVGRTAPFYLKCLYAHQSVA
FT                   GRTILKFQLQVNHRERKQLGFHKIFLQFRIITTRLTGVIHSWTGILTRLKWRICNELSS
FT                   LGYLSLYNLVYVIRNLPHKFLWVEEVDVNDCKDDVKTLLY"
FT   gene            complement(1199. .1642)
FT                   /gene="AC2"
FT   CDS             complement(1199. .1642)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="transactivator protein AC2"
FT                   /db_xref="GOA:G1C5F0"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:G1C5F0"
FT                   /protein_id="AEK48991.1"
FT                   /translation="MSEAHSGDKRKAPIQEPIHAEAKKKRRIPEQRTRIVWKQCGCSAF
FT                   ITPQCKYQNGFTHWGITKSCTDYESSRILRQSHVCGSDCSVLPQVFIRPPERSGENNPQ
FT                   VPTASEPQGEEATGIPQDLSPIQDNYNPSDWCYSQLDWYFDTP"
FT   gene            complement(1575. .2645)
FT                   /gene="AC1"
FT   CDS             complement(1575. .2645)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="replication associated protein"
FT                   /db_xref="GOA:G1C5F1"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:G1C5F1"
FT                   /protein_id="AEK48990.1"
FT                   /translation="MAAPKRFRVSSKNYFITYPRCSLSKEDALEQILKINTPTNKKYIH
FT                   IARELHEDGEPHLHMLVQFEGKFVCTNSRFFDLVSPSRSSHFHPNIQGAKSSSDVKSYV
FT                   EKDGDTLNWGEFQIDGRSARGGQQTANDAAAEALNSGSKEAALQIIREKLPEKFIFQYH
FT                   NLVGNLDRIFSPPPAVYNSPFSSSSFNNVPDIISNWAADNIMDAAARPDRPISIVIEGP
FT                   SRIGKTVWARSLGPHNYLCGHLDLSPRVYSNSAWYNVIDDVNPQYLKHFKEFMGAQKDW
FT                   QSNTKYGKPVQIKGGIPTIFLCNPGEGSSFKSWLDKPEQDALRQWACKNAIFCNVRSPF
FT                   WRQEEGANSGTNSRRG"
FT   gene            complement(2231. .2488)
FT                   /gene="AC4"
FT   CDS             complement(2231. .2488)
FT                   /codon_start=1
FT                   /gene="AC4"
FT                   /product="AC4 protein"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:G1C5F2"
FT                   /protein_id="AEK48993.1"
FT                   /translation="MGNLISTCWCSSKANSSAQIADSSTWYPHPGHLIFTPTSRELNPA
FT                   PMSSPTSRRTGILSTGVNSRSTADLLEEVSRLLMTRQQRP"
XX
SQ   Sequence 2790 BP; 737 A; 588 C; 632 G; 833 T; 0 other;

jf736657 Length: 2790  13-JUN-2012  Type: N  Check: 9567  ..

       1  taatattacc ggtgcccgcg cctccctttt aatgtggacc ccacgcgctt
      51  tactttaatt attaaagacg tgcctgttgc agacttggtc gccaagaatg
     101  gatttgtggg acccgcttca gaaccctctc ccagatactt tatacggttt
     151  tcggtgtatg ctttctgtaa aatacctgca aagtattttg aagaaatacg
     201  agccaggaac cctaggttgg tcgactctag aggacgagct catccgcata
     251  ctgcgtgtca agcagtatgg tagggcgaat tcccgtttct cggagatttc
     301  atccctatgg ggggagaccg gtaagacgga ggctgaactt cgagacagct
     351  atcgtgccct acactgggaa tgctgtccca attgctgccc gaagctatgt
     401  cccggtttct cgaagcgtcc agatgaagag aaggaagggt gatcgcatcc
     451  caaagggatg tgtgggtccc tgtaaggtac aggactatga gttcaagatg
     501  gatgtcccgc acagtggtac ctttgtctgt gtgtctgatt tcactagggg
     551  aactgggctt acccatcgat tgggtaagag ggtatgtgtt aagtccatgg
     601  gcattgatgg taaggtctgg atggacgaca atgtcgccaa acgagaccac
     651  accaacatca tcacttactg gttgatccgt gataggaggc ccaataagga
     701  tccattaacg tttagtcagg cctttactat gtttgataat gagcccacta
     751  cagctaagat ccgaatggat ctgagagata gaatgcaggt attgaagaaa
     801  ttctctgtaa ctgtttctgg tgggccttat aaccacaagg aacaggcatt
     851  agttaggaag ttttttaagg gtttgtataa ccatgttacg tacaaccata
     901  aggaggaagc taagtatgaa aatcatttag agaatgcttt gatgttgtat
     951  tctgctagca gtcatgctag caatcctgta tatcagactc tgcgttgtag
    1001  ggcttatttt tatgattcac acaataatta ataaaattgt tatttcatta
    1051  atatagtaat gtttttacat cgtctttaca atcgtttaca tctacttctt
    1101  ctacccacaa gaacttgtgg ggtaaattcc taattacata aactaagtta
    1151  tacaatgata aataacctaa actacttaac tcattacaaa ttcgccattt
    1201  aaggcgtgtc aaaataccag tccaactgtg aataacacca gtcagacggg
    1251  ttgtaattat cctgaattgg agaaagatct tgtggaatcc cagttgcttc
    1301  ctctccctgt ggttcacttg cagttggaac ttgaggattg ttctccccgc
    1351  tacgctctgg tgggcgtata aacacttgag gtagaacgga gcagtccgac
    1401  ccacagacat gggattgtcg aagaattcga ctgctctcat agtctgtgca
    1451  tgacttagtg attccccagt gcgtgaatcc attctggtat ttgcactgag
    1501  gagttatgaa agcggaacag ccgcactgct tccacactat ccttgtcctt
    1551  tgctctggta tgcggcgttt ttttttagcc tctgcgtgaa ttggttcctg
    1601  aattggcgcc ttcctcttgt ctccagaatg ggcttctgac attacagaat
    1651  atggcgttct tgcaagccca ctgcctcagt gcgtcttgtt ctggcttatc
    1701  tagccaggat ttaaatgagg atccttcgcc tggattgcag aggaagatag
    1751  tgggtattcc acctttaatt tgaactggct tcccgtactt tgtgtttgat
    1801  tgccagtcct tctgggcccc cataaattct ttaaagtgct ttaggtattg
    1851  ggggttgacg tcatcaatga cgttatacca agcactatta ctgtacactc
    1901  ttggactcag atccaagtgc ccacacaaat aattgtgtgg cccaagagac
    1951  cgagcccaaa ctgttttacc tatcctactt ggtccttcta taactatact
    2001  aatgggccta tccggccgcg cagcggcatc catgatatta tcagcagccc
    2051  aattgcttat aatatcaggt acattattaa aagaagaaga agaaaaagga
    2101  gaattatata cagcaggagg aggagaaaaa atcctatcta aattaccaac
    2151  taaattatga tattgaaaaa taaatttttc tgggagtttc tcccttatta
    2201  tttgtaatgc agcctctttg ctgccggaat ttaaggcctc tgctgccgcg
    2251  tcattagcag tctgctgacc tcctctagca gatctgccgt cgatctggaa
    2301  ttcaccccag ttgagagtat ccccgtcctt ctcgacgtag gacttgacat
    2351  cggagctgga tttagctccc tggatgttgg ggtgaaaatg agatgacctg
    2401  gatggggata ccaggtcgaa gaatctgcta tttgtgcaga cgaatttgcc
    2451  ttcgaactgc accagcatgt ggagatgagg ttccccatcc tcgtgaagtt
    2501  ctctggctat gtggatatat tttttgtttg tgggtgtgtt tattttcagt
    2551  atttgctcta aagcatcttc tttagagaga gaacatcgtg gataagtaat
    2601  aaaataattt ttagaagaaa ctctaaaccg tttaggagct gccatctgta
    2651  ttggtgacaa tccaaacttg ctgaatgaat tggtgactgg tgacaattta
    2701  tactatgtca ccaaatggca ttatggtaat ttgaacaact ttaatttgaa
    2751  ttcgaaatcc tattggtccg ccaaaaagcg ggcaccgtat