Sequence of DPV Sweet potato leaf curl China virus
Sweet potato leaf curl China virus isolate SPLCCNV-ZJ, complete genome.
ACC No: JF736657
Dated: 2012-06-13 | Length: 2790 | CRC: 1979621120
ID JF736657; SV 1; circular; genomic DNA; STD; VRL; 2790 BP. XX AC JF736657; XX DT 25-JUL-2011 (Rel. 109, Created) DT 13-JUN-2012 (Rel. 113, Last updated, Version 4) XX DE Sweet potato leaf curl China virus isolate SPLCCNV-ZJ, complete genome. XX KW . XX OS Sweet potato leaf curl China virus OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus; OC unclassified Begomovirus. XX RN [1] RP 1-2790 RX DOI; 10.1007/s00705-011-1194-6. RX PUBMED; 22179901. RA Bi H., Zhang P.; RT "Molecular characterization of two sweepoviruses from China and evaluation RT of the infectivity of cloned SPLCV-JS in Nicotiana benthamiana"; RL Arch. Virol. 157(3):441-454(2012). XX RN [2] RP 1-2790 RA Bi H., Zhang P.; RT ; RL Submitted (28-MAR-2011) to the INSDC. RL SIBS-ETH Shanghai Center for Cassava Biotechnology, Institute of Plant RL Physiology & Ecology, Shanghai Institutes for Biological Sciences, CAS, 300 RL Fenglin Road, Shanghai, Shanghai 200032, China XX FH Key Location/Qualifiers FH FT source 1. .2790 FT /organism="Sweet potato leaf curl China virus" FT /host="sweet potato" FT /isolate="SPLCCNV-ZJ" FT /mol_type="genomic DNA" FT /country="China:Zhejiang" FT /isolation_source="leaf" FT /collected_by="Huiping Bi" FT /collection_date="20-Apr-2010" FT /db_xref="taxon:1198219" FT misc_feature join(2646. .2790,1. .97) FT /note="common region" FT gene 98. .442 FT /gene="AV2" FT CDS 98. .442 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein AV2" FT /db_xref="GOA:G1C5E7" FT /db_xref="InterPro:IPR002511" FT /db_xref="UniProtKB/TrEMBL:G1C5E7" FT /protein_id="AEK48995.1" FT /translation="MDLWDPLQNPLPDTLYGFRCMLSVKYLQSILKKYEPGTLGWSTLE FT DELIRILRVKQYGRANSRFSEISSLWGETGKTEAELRDSYRALHWECCPNCCPKLCPGF FT SKRPDEEKEG" FT gene 267. .1031 FT /gene="AV1" FT CDS 267. .1031 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein AV1" FT /db_xref="GOA:G1C5E8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:G1C5E8" FT /protein_id="AEK48994.1" FT /translation="MVGRIPVSRRFHPYGGRPVRRRLNFETAIVPYTGNAVPIAARSYV FT PVSRSVQMKRRKGDRIPKGCVGPCKVQDYEFKMDVPHSGTFVCVSDFTRGTGLTHRLGK FT RVCVKSMGIDGKVWMDDNVAKRDHTNIITYWLIRDRRPNKDPLTFSQAFTMFDNEPTTA FT KIRMDLRDRMQVLKKFSVTVSGGPYNHKEQALVRKFFKGLYNHVTYNHKEEAKYENHLE FT NALMLYSASSHASNPVYQTLRCRAYFYDSHNN" FT gene complement(1048. .1482) FT /gene="AC3" FT CDS complement(1048. .1482) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:Q19PW4" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q19PW4" FT /protein_id="AEK48992.1" FT /translation="MDSRTGESLSHAQTMRAVEFFDNPMSVGRTAPFYLKCLYAHQSVA FT GRTILKFQLQVNHRERKQLGFHKIFLQFRIITTRLTGVIHSWTGILTRLKWRICNELSS FT LGYLSLYNLVYVIRNLPHKFLWVEEVDVNDCKDDVKTLLY" FT gene complement(1199. .1642) FT /gene="AC2" FT CDS complement(1199. .1642) FT /codon_start=1 FT /gene="AC2" FT /product="transactivator protein AC2" FT /db_xref="GOA:G1C5F0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:G1C5F0" FT /protein_id="AEK48991.1" FT /translation="MSEAHSGDKRKAPIQEPIHAEAKKKRRIPEQRTRIVWKQCGCSAF FT ITPQCKYQNGFTHWGITKSCTDYESSRILRQSHVCGSDCSVLPQVFIRPPERSGENNPQ FT VPTASEPQGEEATGIPQDLSPIQDNYNPSDWCYSQLDWYFDTP" FT gene complement(1575. .2645) FT /gene="AC1" FT CDS complement(1575. .2645) FT /codon_start=1 FT /gene="AC1" FT /product="replication associated protein" FT /db_xref="GOA:G1C5F1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G1C5F1" FT /protein_id="AEK48990.1" FT /translation="MAAPKRFRVSSKNYFITYPRCSLSKEDALEQILKINTPTNKKYIH FT IARELHEDGEPHLHMLVQFEGKFVCTNSRFFDLVSPSRSSHFHPNIQGAKSSSDVKSYV FT EKDGDTLNWGEFQIDGRSARGGQQTANDAAAEALNSGSKEAALQIIREKLPEKFIFQYH FT NLVGNLDRIFSPPPAVYNSPFSSSSFNNVPDIISNWAADNIMDAAARPDRPISIVIEGP FT SRIGKTVWARSLGPHNYLCGHLDLSPRVYSNSAWYNVIDDVNPQYLKHFKEFMGAQKDW FT QSNTKYGKPVQIKGGIPTIFLCNPGEGSSFKSWLDKPEQDALRQWACKNAIFCNVRSPF FT WRQEEGANSGTNSRRG" FT gene complement(2231. .2488) FT /gene="AC4" FT CDS complement(2231. .2488) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:G1C5F2" FT /protein_id="AEK48993.1" FT /translation="MGNLISTCWCSSKANSSAQIADSSTWYPHPGHLIFTPTSRELNPA FT PMSSPTSRRTGILSTGVNSRSTADLLEEVSRLLMTRQQRP" XX SQ Sequence 2790 BP; 737 A; 588 C; 632 G; 833 T; 0 other; jf736657 Length: 2790 13-JUN-2012 Type: N Check: 9567 .. 1 taatattacc ggtgcccgcg cctccctttt aatgtggacc ccacgcgctt 51 tactttaatt attaaagacg tgcctgttgc agacttggtc gccaagaatg 101 gatttgtggg acccgcttca gaaccctctc ccagatactt tatacggttt 151 tcggtgtatg ctttctgtaa aatacctgca aagtattttg aagaaatacg 201 agccaggaac cctaggttgg tcgactctag aggacgagct catccgcata 251 ctgcgtgtca agcagtatgg tagggcgaat tcccgtttct cggagatttc 301 atccctatgg ggggagaccg gtaagacgga ggctgaactt cgagacagct 351 atcgtgccct acactgggaa tgctgtccca attgctgccc gaagctatgt 401 cccggtttct cgaagcgtcc agatgaagag aaggaagggt gatcgcatcc 451 caaagggatg tgtgggtccc tgtaaggtac aggactatga gttcaagatg 501 gatgtcccgc acagtggtac ctttgtctgt gtgtctgatt tcactagggg 551 aactgggctt acccatcgat tgggtaagag ggtatgtgtt aagtccatgg 601 gcattgatgg taaggtctgg atggacgaca atgtcgccaa acgagaccac 651 accaacatca tcacttactg gttgatccgt gataggaggc ccaataagga 701 tccattaacg tttagtcagg cctttactat gtttgataat gagcccacta 751 cagctaagat ccgaatggat ctgagagata gaatgcaggt attgaagaaa 801 ttctctgtaa ctgtttctgg tgggccttat aaccacaagg aacaggcatt 851 agttaggaag ttttttaagg gtttgtataa ccatgttacg tacaaccata 901 aggaggaagc taagtatgaa aatcatttag agaatgcttt gatgttgtat 951 tctgctagca gtcatgctag caatcctgta tatcagactc tgcgttgtag 1001 ggcttatttt tatgattcac acaataatta ataaaattgt tatttcatta 1051 atatagtaat gtttttacat cgtctttaca atcgtttaca tctacttctt 1101 ctacccacaa gaacttgtgg ggtaaattcc taattacata aactaagtta 1151 tacaatgata aataacctaa actacttaac tcattacaaa ttcgccattt 1201 aaggcgtgtc aaaataccag tccaactgtg aataacacca gtcagacggg 1251 ttgtaattat cctgaattgg agaaagatct tgtggaatcc cagttgcttc 1301 ctctccctgt ggttcacttg cagttggaac ttgaggattg ttctccccgc 1351 tacgctctgg tgggcgtata aacacttgag gtagaacgga gcagtccgac 1401 ccacagacat gggattgtcg aagaattcga ctgctctcat agtctgtgca 1451 tgacttagtg attccccagt gcgtgaatcc attctggtat ttgcactgag 1501 gagttatgaa agcggaacag ccgcactgct tccacactat ccttgtcctt 1551 tgctctggta tgcggcgttt ttttttagcc tctgcgtgaa ttggttcctg 1601 aattggcgcc ttcctcttgt ctccagaatg ggcttctgac attacagaat 1651 atggcgttct tgcaagccca ctgcctcagt gcgtcttgtt ctggcttatc 1701 tagccaggat ttaaatgagg atccttcgcc tggattgcag aggaagatag 1751 tgggtattcc acctttaatt tgaactggct tcccgtactt tgtgtttgat 1801 tgccagtcct tctgggcccc cataaattct ttaaagtgct ttaggtattg 1851 ggggttgacg tcatcaatga cgttatacca agcactatta ctgtacactc 1901 ttggactcag atccaagtgc ccacacaaat aattgtgtgg cccaagagac 1951 cgagcccaaa ctgttttacc tatcctactt ggtccttcta taactatact 2001 aatgggccta tccggccgcg cagcggcatc catgatatta tcagcagccc 2051 aattgcttat aatatcaggt acattattaa aagaagaaga agaaaaagga 2101 gaattatata cagcaggagg aggagaaaaa atcctatcta aattaccaac 2151 taaattatga tattgaaaaa taaatttttc tgggagtttc tcccttatta 2201 tttgtaatgc agcctctttg ctgccggaat ttaaggcctc tgctgccgcg 2251 tcattagcag tctgctgacc tcctctagca gatctgccgt cgatctggaa 2301 ttcaccccag ttgagagtat ccccgtcctt ctcgacgtag gacttgacat 2351 cggagctgga tttagctccc tggatgttgg ggtgaaaatg agatgacctg 2401 gatggggata ccaggtcgaa gaatctgcta tttgtgcaga cgaatttgcc 2451 ttcgaactgc accagcatgt ggagatgagg ttccccatcc tcgtgaagtt 2501 ctctggctat gtggatatat tttttgtttg tgggtgtgtt tattttcagt 2551 atttgctcta aagcatcttc tttagagaga gaacatcgtg gataagtaat 2601 aaaataattt ttagaagaaa ctctaaaccg tttaggagct gccatctgta 2651 ttggtgacaa tccaaacttg ctgaatgaat tggtgactgg tgacaattta 2701 tactatgtca ccaaatggca ttatggtaat ttgaacaact ttaatttgaa 2751 ttcgaaatcc tattggtccg ccaaaaagcg ggcaccgtat