Sequence of DPV Spissistilus festinus reovirus

Spissistilus festinus reovirus strain Type segment 1, complete sequence.

ACC No: JF773382

Dated: 2012-02-05 | Length: 4012 | CRC: 1346333750

                
ID   JF773382; SV 1; linear; genomic RNA; STD; VRL; 4012 BP.
XX
AC   JF773382;
XX
DT   05-FEB-2012 (Rel. 111, Created)
DT   05-FEB-2012 (Rel. 111, Last updated, Version 1)
XX
DE   Spissistilus festinus reovirus strain Type segment 1, complete sequence.
XX
KW   .
XX
OS   Spissistilus festinus reovirus
OC   Viruses; dsRNA viruses; Reoviridae; unclassified Reoviridae.
XX
RN   [1]
RP   1-4012
RX   PUBMED; 22142476.
RA   Spear A., Sisterson M.S., Stenger D.C.;
RT   "Reovirus genomes from plant-feeding insects represent a newly discovered
RT   lineage within the family Reoviridae";
RL   Virus Res. 163:503-511(2011).
XX
RN   [2]
RP   1-4012
RA   Spear A., Stenger D.C.;
RT   ;
RL   Submitted (04-APR-2011) to the INSDC.
RL   San Joaquin Valley Agricultural Sciences Center, USDA-ARS, 9611 S.
RL   Riverbend Ave, Parlier, CA 93648, USA
XX
CC   GenBank Accession Numbers JF773382-JF773391 represent the complete
CC   genome of Spissistilus festinus reovirus strain Type.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .4012
FT                   /organism="Spissistilus festinus reovirus"
FT                   /segment="1"
FT                   /host="Spissistilus festinus"
FT                   /strain="Type"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="2009"
FT                   /db_xref="taxon:1004049"
FT   gene            1. .4012
FT                   /gene="P1"
FT   mRNA            1. .4012
FT                   /gene="P1"
FT                   /product="P1"
FT   CDS             14. .3946
FT                   /codon_start=1
FT                   /gene="P1"
FT                   /product="structural protein"
FT                   /protein_id="AEC32487.1"
FT                   /translation="MDRRDLTLLLGGATESTPEDNTLLETITNVINFLFNDEPTETTVT
FT                   SIRKRLSDFNRYRKLSSHLAAIYNLAPLHPIATTFTTRVSFNAYLTDLTPQASLALWYD
FT                   LFGLQIVLQNELFGESPRSVGFQVDVSLYAELSDVFKRRPCSPSILERSRNELYQRRYG
FT                   IGLPHYHFPKVVNMRLTFTPTRVSPISSVYGITLICEVGAGRDDDVLIFETNVLVEDDA
FT                   PHVITLNHCLRASYDQSALSELQPHVFGTQLPQIVSEIQNQYVEVYCWDGVLRITDEGM
FT                   MTPAVAANLLYFSNTQKLTAQCLGCPAILDVDDDLVGFKVFFTPSSLSVPSTVDKKIKF
FT                   SDAHGYVPRPFSMVYDQYLCRKQMFDVLSLLCLYQLASLWSSYFRGSEGEPVKKKKGEG
FT                   FLVGLLDGVSGNMAALTDLAKRSIQYNACNVRAEAGKVCGVPVATSIARRISSKLVRDG
FT                   HSMSDKNVFHFAPVGYTGISEVKNRAYFVPESSFPPCPPGGTNIYKVKMTANVNLDSIA
FT                   ERVSVFEDENVQVFLLLQRHFKKDAMSDGEVVYTDDMSGLVLSLPTLTDFEFVGRVPPA
FT                   ADFIDILSKNETSSDMSWFKSVVGVSADSITVTGVRCVVITKKAVIAPTLDADHDNTIT
FT                   CTVAGAGLRQTTLTFSAWKALELTTEDKVRYHGVTCDVPITEAMVESYRDVVLWHQPFS
FT                   FPKQKGAIRRTYTSYFEPNAQRHYTVMNISQSLHHPAHPTDCYLIEARCELGQVNVEYT
FT                   RTVDLSSSRTYFRGSSCTSNHDLNRAFRTWVRDNAPCSIHKNGLLPGTFMGKVESISLN
FT                   LLVPYSDVVPLSAIAWITALDDITFQLALIGDVAANALALASANRDRLDALERAQADAE
FT                   KWAMIAFAIDLVAAVVPGGPVLAALGAIIAKIGERFSRLGPRLIGLSIYLSKVGNAFKA
FT                   LIHEKGLDDISARMSRVSSESSILWKLTRKKNREDVSGESTDLLDKSLNFTLVDPTEYI
FT                   KFNIITNYSSAVTNHPTKDVLNILKESSHLDDTIASSLSVMHRPLQVLPPKLRDIAHWA
FT                   ATHRVEKASQRKLSKWLNDTRHPTHSYVTLTEDIPDLARGTLRKRLTMIGVGDPNPGGK
FT                   PVGDKGAGIGSYFIEFDVLGVHQSTKSAVLRPRSWRDIGYDDTDLSNIYRTMFGMSHYD
FT                   NKLTLDDAWGAIIDRTKDRILYDTRVTSIPLSYTRADQIRDIARNFSWEYNLLSNNCQN
FT                   FAHGLYEYARGGVKPSWLSDGEMSAVFKNQIDALHSKLTWDEVSLDDLSRPLPPSVTSA
FT                   ASDTQPLIPSFGLSVRKDERPSGSGG"
XX
SQ   Sequence 4012 BP; 989 A; 951 C; 1014 G; 1058 T; 0 other;

jf773382 Length: 4012  05-FEB-2012  Type: N  Check: 3882  ..

       1  agagaaccac ccgatggaca gacgagatct caccctcttg ctcggaggag
      51  cgactgaatc cacgccggaa gacaacacgt tgttagagac tatcactaat
     101  gttattaact tcctatttaa cgacgaacca accgaaacaa cggtcacatc
     151  catacggaaa cgccttagtg attttaatcg ttatcgtaag ctatcttccc
     201  atttagcagc tatttacaat ctcgcacctt tgcatccaat agccactacg
     251  tttaccaccc gcgtttcctt caacgcgtat ctaactgatc taactcccca
     301  ggctagctta gctttgtggt acgacttgtt tggcctgcag attgttctcc
     351  agaatgagtt gttcggagag tcgcctagaa gtgtcgggtt tcaggtcgac
     401  gtcagcttat acgccgaact ctcagatgta ttcaaaaggc gcccgtgttc
     451  tccctccatt cttgagcggt cgcgaaatga gttataccaa cgacggtatg
     501  ggattggtct tcctcactac catttcccaa aggttgtcaa catgaggctt
     551  accttcactc ctactcgagt gtcccctatc tcctcagtgt atggcattac
     601  tttgatctgt gaggtaggag cggggaggga tgatgacgta ctaatcttcg
     651  aaaccaatgt gttagtagag gatgacgccc ctcacgttat tacgttgaat
     701  cactgtctta gagcgtcata tgatcaaagt gcgctttctg agctacaacc
     751  ccatgtgttt gggactcagc tgccccagat agtctctgaa atccaaaacc
     801  agtatgtgga ggtgtactgt tgggacgggg tacttaggat cactgatgaa
     851  gggatgatga ctcctgctgt tgcagctaac ctactgtatt tctccaacac
     901  ccaaaaactg acggctcaat gcttgggatg tccagcaata ttggacgtag
     951  atgatgatct agttgggttt aaggttttct tcacgccctc ttccctctct
    1001  gtgccttcca ctgtcgataa gaagattaaa ttcagtgatg cccacgggta
    1051  tgtgccacgt ccctttagta tggtgtatga ccaatacctg tgtaggaaac
    1101  agatgtttga cgtactgtcg ttgctatgcc tataccagct ggcctcgcta
    1151  tggtccagtt attttagggg gagtgagggg gagccagtga agaagaagaa
    1201  aggggaaggt tttctagtgg ggttgctgga tggagtgagc gggaatatgg
    1251  cggcgcttac tgatctagcg aagcggtcaa tacaatataa cgcttgtaac
    1301  gtcagagctg aggcagggaa agtttgtggg gtcccagttg ccacgagcat
    1351  tgcgaggagg atttctagta aattagtacg agatggacat tcaatgtcag
    1401  acaagaatgt cttccatttc gcccccgttg gctatactgg tatcagtgaa
    1451  gtcaagaacc gagcgtattt cgttccagaa agttcttttc cgccctgccc
    1501  acctgggggg accaatattt acaaggtaaa gatgactgct aacgttaatc
    1551  tggacagcat tgctgagcga gttagcgtgt ttgaagacga aaacgtccaa
    1601  gttttcttac tattgcaacg tcatttcaaa aaggacgcga tgagcgatgg
    1651  tgaggtggtt tacactgatg acatgtctgg acttgtgctt tccttgccca
    1701  cactgacaga cttcgagttt gtggggagag tgccacctgc tgcggatttc
    1751  atcgacatac ttagtaagaa tgagacttca tcagacatgt catggttcaa
    1801  gagtgttgtt ggagtaagcg ccgattcaat cacggttacg ggtgtgcggt
    1851  gcgtagtgat aaccaagaag gctgtgattg ccccaaccct tgatgctgat
    1901  catgataaca caatcacttg tacagtggcc ggggcaggac tacgtcaaac
    1951  cacgctgact tttagcgcgt ggaaggcgtt agagttgacg acagaggaca
    2001  aagtgcgcta tcacggtgtt acatgcgacg ttcctattac tgaagcgatg
    2051  gtggagagct atcgtgatgt agtcctttgg catcagcctt tctcattccc
    2101  aaagcaaaag ggggctattc gaagaaccta cacgtcgtac tttgagccca
    2151  acgcgcaaag acattatacg gtcatgaaca tttctcaaag tctgcaccat
    2201  cctgctcacc ctactgactg ttaccttatt gaggctaggt gtgaacttgg
    2251  gcaagtcaac gtcgagtaca ctaggaccgt ggatctatcc agctcacgaa
    2301  catattttcg tggatccagt tgtacttcca accatgattt gaatcgggct
    2351  ttccgcacat gggtgaggga caatgcgccg tgctctattc acaagaacgg
    2401  cctactccct gggacattta tggggaaggt ggaatctata tcactaaacc
    2451  ttttagtccc ttactctgac gtggttcctt tatccgccat cgcatggatc
    2501  acagcactgg acgacattac cttccagtta gcgttaattg gagacgtcgc
    2551  cgccaacgct ttagccctag ctagcgccaa tagggacagg ttagacgctc
    2601  ttgaacgcgc tcaggcggac gcggaaaaat gggcaatgat tgcgtttgct
    2651  atagatttgg ttgccgctgt cgttccagga ggtccagtat tggctgctct
    2701  aggggctatc atcgctaaga tcggtgagag attttctagg cttgggccca
    2751  ggctgattgg attgtcaata tacctttcca aggtagggaa cgcgttcaag
    2801  gcactcatcc acgagaaagg ccttgatgac atttcagcgc gtatgtctcg
    2851  agtctcttcg gagtcatcta tattgtggaa gttgacgagg aagaagaata
    2901  gagaggatgt cagcggtgaa tcgacagact tgctggataa aagtctaaat
    2951  tttacactcg tggacccgac tgagtacatt aagtttaaca ttatcaccaa
    3001  ctactcgtct gctgtgacta accaccctac caaggatgtg ctgaacattc
    3051  tgaaggaatc ctcacatctc gacgacacta ttgcttcctc tctttccgtt
    3101  atgcaccgac ccttacaagt tctccctccg aagttgcgtg acatcgctca
    3151  ttgggcagct actcacaggg tggagaaagc gtctcagcgc aagctgtcga
    3201  agtggcttaa cgacacgaga caccccaccc actcgtacgt taccctaacc
    3251  gaagacattc ctgaccttgc aagggggacg cttcgaaagc gacttacgat
    3301  gattggtgtt ggtgacccga atccaggcgg taagcccgtg ggggacaagg
    3351  gagcaggtat aggctcatat ttcattgagt tcgatgttct cggagtgcat
    3401  caatctacca agtctgcagt tctgcggccc cggtcttgga gagatattgg
    3451  ctacgatgac actgaccttt ctaacatata tcggactatg tttgggatga
    3501  gccattacga taataaactc acgctggacg acgcttgggg agcaatcatc
    3551  gataggacaa aggatcgtat tctctacgac actagggtca cttcgattcc
    3601  cttgtcctac acccgagcgg accaaatccg ggacatcgcc cgtaactttt
    3651  cctgggagta caatctgttg tcaaataatt gtcaaaattt cgcccatggc
    3701  ttgtatgagt acgcccgtgg cggagtgaag ccttcatggt tgtccgatgg
    3751  ggaaatgtcg gccgttttca agaatcagat tgatgctctc cactcaaaac
    3801  taacatggga tgaagtatct ctcgatgact tgtctcggcc cctccccccg
    3851  tccgtgacta gcgctgcatc agatacgcag ccacttatac catcttttgg
    3901  gttatcagtt aggaaggacg aacggcccag cgggagtggc ggatagatct
    3951  gttcgtgctg tgcgctggtg agcgtccctg gagaagggta gcacaagggt
    4001  ggtcgatgtt gt