Sequence of DPV Tomato mottle leaf curl virus
Tomato mottle leaf curl virus isolate DF[BR:Turv2904:04] segment DNA-A, complete sequence.
ACC No: JF803249
Dated: 2012-04-05 | Length: 2631 | CRC: 1673439125
ID JF803249; SV 1; circular; genomic DNA; STD; VRL; 2631 BP.
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AC JF803249;
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DT 10-OCT-2011 (Rel. 110, Created)
DT 05-APR-2012 (Rel. 112, Last updated, Version 3)
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DE Tomato mottle leaf curl virus isolate DF[BR:Turv2904:04] segment DNA-A,
DE complete sequence.
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KW .
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OS Tomato mottle leaf curl virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2631
RX DOI; 10.1007/s00705-011-1213-7.
RX PUBMED; 22218964.
RA Albuquerque L.C., Varsani A., Fernandes F.R., Pinheiro B., Martin D.P.,
RA de Tarso Oliveira Ferreira P., Lemos T.O., Inoue-Nagata A.K.;
RT "Further characterization of tomato-infecting begomoviruses in Brazil";
RL Arch. Virol. 157(4):747-752(2012).
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RN [2]
RP 1-2631
RA Albuquerque L.C., Varsani A., Pinheiro B., Fernandes F.R., Martins D.P.,
RA Ferreira P.T.O., Lemos T.O., Inoue-Nagata A.K.;
RT ;
RL Submitted (13-APR-2011) to the INSDC.
RL Virology, Embrapa Vegetables, Km 09, BR060, Brasilia, DF 70359-970, Brazil
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FH Key Location/Qualifiers
FH
FT source 1. .2631
FT /organism="Tomato mottle leaf curl virus"
FT /segment="DNA-A"
FT /host="Solanum lycopersicum"
FT /isolate="DF[BR:Turv2904:04]"
FT /mol_type="genomic DNA"
FT /country="Brazil:Goias"
FT /collection_date="2004"
FT /clone="2904"
FT /note="acronym: TMoLCV"
FT /db_xref="taxon:172394"
FT CDS 207. .962
FT /codon_start=1
FT /product="V1"
FT /note="CP"
FT /db_xref="GOA:G4XFQ9"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:G4XFQ9"
FT /protein_id="AEP82956.1"
FT /translation="MPKRDAPWRTMAGTSKVSRSANFSPRGGIGSKSEKAQAWVNRPMY
FT RKPRIYRMYRTPDVPKGCEGPCKVQSFEQRHDVSHTGKVMCISDVTRGNGITHRVGKRF
FT CVKSVYILGKVWMDDNIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV
FT KNDLRDRYQVLHRFYAKVTGGQYASNEQAIVKRFWKVNNHVVYNHQEAGKYENHTENAL
FT LLYMACTHASNPVYATLKIRIYFYDSITN"
FT CDS complement(959. .1357)
FT /codon_start=1
FT /product="C3"
FT /note="REn"
FT /db_xref="GOA:G4XFQ5"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:G4XFQ5"
FT /protein_id="AEP82957.1"
FT /translation="MDSRTGEVITAHQAQNGAFIWEVPNPLYFKITNVENPIYTNTRIY
FT HIQIRFNHNLRRALDLQKCFLNFQVGTTSTTASGTTYLNRFRDLVNIYLYRLGVISINN
FT VIRAVRFATDKPYVNYVLEDHSIKFKVY"
FT CDS complement(1104. .1493)
FT /codon_start=1
FT /product="C2"
FT /note="Trap"
FT /db_xref="GOA:G4XFR1"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:G4XFR1"
FT /protein_id="AEP82958.1"
FT /translation="MQNSSSSTPPSIKPQHRIAKKRVIRRKRIDLNCGCTIYQHIDCIG
FT NGFTHRGSHHCTSGTEWRVYLGGPKSPLFQDNKRRESNIHEHKDLPHPDTVQPQPQESI
FT GSPKVLPELPSGDDVNDSFWDDLFK"
FT CDS complement(1435. .2490)
FT /codon_start=1
FT /product="C1"
FT /note="Rep"
FT /db_xref="GOA:G4XFR2"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:G4XFR2"
FT /protein_id="AEP82959.1"
FT /translation="MPPPKPFRVNARNYFLTYPQCSLSKEEALSQLLALNTPTNKLFIR
FT VSRELHEDGQPHLHVLIQFEGKYNCKNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKTYV
FT EKDGDFIDHGVFQIDGRSARGGQQSANDTYAKVLNSGSVMEALNILREEQPKDFVLQHH
FT NIRSNLERIFQNAPEPWVPPFPLSSFTEVPEEMQEWADDYFGGDPAARPERPISIIIEG
FT DSRTGKTMWARALGPHNYLSGHLDFNSRVYSNEAEYNVIDDVTPQYLKMKHWKELIGAQ
FT KDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKEFLERQENTALRNWTLHNAKFIFLN
FT TPLYKTTAQDS"
FT CDS complement(2040. .2333)
FT /codon_start=1
FT /product="C4"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:G4XFQ8"
FT /protein_id="AEP82960.1"
FT /translation="MGNLISMCSSNSRVNTTARTTDSSTSYPQPDQHISIRTFRELRAL
FT QMSKPTWRKTETSLIMEFSKSTADQLEEVSNLQMTRMPRSSIQDPSWRPSIY"
XX
SQ Sequence 2631 BP; 661 A; 547 C; 627 G; 796 T; 0 other;
jf803249 Length: 2631 05-APR-2012 Type: N Check: 8904 ..
1 accggatggc cgcgcggggt ttttttgacc cgctccgtga tgtgtttttt
51 gtcttttact atgtggtcca gtcaataaat gacaaatatg accgtccaat
101 aagaaatgat tttcaaagtc taattattta aaaatacttg gtctctaagt
151 ttggtaaagt ttataaatgg tctttcctcg taatgttata ccaactttaa
201 ttcataatgc ctaagcgtga tgccccatgg cgcacaatgg cggggacctc
251 aaaggttagc cgctctgcaa atttctctcc tcgtggagga attgggtcga
301 aatcagaaaa ggcccaggcc tgggttaaca ggcccatgta taggaagccc
351 aggatatatc ggatgtatag aactcccgat gtaccaaagg gctgtgaagg
401 cccatgtaag gtccaatcct tcgagcagcg tcatgatgtc tctcatactg
451 ggaaggtgat gtgtatttcc gatgtcactc gtggtaacgg tattacccac
501 cgtgtgggta aacgtttttg tgtcaagtca gtgtatatat taggcaaggt
551 ctggatggat gacaacatca agttgaagaa ccacacgaat agtgtgatgt
601 tctggttagt tagggatagg cgaccgtatg gcacgcccat ggattttggc
651 caggtgttca acatgtttga caacgagccc agtactgcca ccgtgaagaa
701 cgatctccgc gatcgttacc aggtcctgca caggttctat gccaaggtta
751 caggtggaca atacgccagc aacgagcagg ctattgtcaa gaggttctgg
801 aaggtcaaca accatgtggt gtacaaccat caggaggcag ggaaatacga
851 gaaccatacg gagaacgctc tattattgta tatggcatgt actcatgcct
901 ctaatcctgt atatgctact ttaaaaattc ggatctattt ttatgattcg
951 ataacaaatt aataaacttt aaattttatt gaatgatctt ctagtacata
1001 gtttacatat ggtttatctg ttgcgaatcg aacagctcta attacattgt
1051 taattgaaat aactcctaat cgatacaaat aaatattaac taaatcccta
1101 aacctattta aataagtcgt cccagaagct gtcgttgacg tcgtccccac
1151 ttggaagttc aggaagcact tttggagatc caatgctctc ctgaggttgt
1201 ggttgaaccg tatctggatg tggtagatcc ttgtgttcgt gtatattgga
1251 ttctctacgt ttgttatctt gaaatagagg ggatttggga cctcccagat
1301 aaacgcgcca ttctgtgcct gatgtgcagt gatgacttcc ccggtgcgtg
1351 aatccattgc cgatgcagtc gatgtgttgg tatatggtgc agccacagtt
1401 taggtctatg cgcttgcgtc gaatgaccct ctttttagct atcctgtgct
1451 gtggttttat agaggggggt gttgaggaag atgaattttg cattgtgcag
1501 tgtccagttt ctgagggctg tgttttcttg tctttcgaga aactctttat
1551 agctggcccc ctctcctgga ttgcagagca cgattgaggg tatccctcct
1601 ttaatttgaa ctggctttcc gtatttgcag tttgattgcc agtccttttg
1651 ggcccctatg agctctttcc aatgcttcat ctttagatat tgcggagtga
1701 cgtcatcaat gacgttgtac tccgcttcgt ttgagtaaac cctagaattg
1751 aaatccaagt gtccactcaa atagttatgt gggcctagtg cacgagccca
1801 catcgtcttc cccgtcctcg aatcaccctc gatgattata ctaataggtc
1851 tctccggccg cgcagcggga tccccaccaa aataatcatc cgcccactct
1901 tgcatctcct ccggaacctc agtaaaggag gagaggggaa acggaggaac
1951 ccatggttcc ggagcattct gaaagatacg ttctaaatta gaacgtatgt
2001 tgtgatgttg taggacgaag tcctttggtt gctcctccct caatatattg
2051 agggcctcca tgacggatcc tgaattgagg accttggcat acgtgtcatt
2101 tgcagattgc tgacctcctc tagctgatct gccgtcgatt tggaaaactc
2151 catgatcaat gaagtctccg tctttctcca cgtaggtttt gacatctgaa
2201 gagctcttag ctccctgaat gttcggatgg aaatgtgctg atcgggttgg
2251 ggatacgagg tcgaagaatc ggttgttctt gcagttgtat ttaccctcga
2301 attggatgag cacatggaga tgaggttgcc catcttcgtg tagttctctt
2351 gagacacgaa tgaataattt attggttggg gtgtttaggg ctaataattg
2401 ggaaagtgct tcttctttgg atagagagca ctgtggataa gtgaggaaat
2451 aatttctagc atttactcta aatggcttag gcggtggcat atttgtaata
2501 atagttgggc accgattggg gtcttctcaa acttactaaa gcaattgggg
2551 actggggtct tatatatact agaaccctct atagaacttt caatctcgtt
2601 cacacacgtg gcggccatcc gatataatat t