Sequence of DPV Southern rice black-streaked dwarf virus
Southern rice black-streaked dwarf virus isolate HNzhijiang29 major capsid protein gene, complete cds.
ACC No: JF803440
Dated: 2011-09-27 | Length: 1674 | CRC: 292778866
ID JF803440; SV 1; linear; genomic RNA; STD; VRL; 1674 BP. XX AC JF803440; XX DT 27-SEP-2011 (Rel. 110, Created) DT 27-SEP-2011 (Rel. 110, Last updated, Version 1) XX DE Southern rice black-streaked dwarf virus isolate HNzhijiang29 major capsid DE protein gene, complete cds. XX KW . XX OS Southern rice black-streaked dwarf virus OC Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Fijivirus; OC unclassified Fijivirus. XX RN [1] RP 1-1674 RA Gao R.Z., Cheng Z.B., Zhou Y.J.; RT ; RL Submitted (13-APR-2011) to the INSDC. RL Institute of Plant Protection, Jiangsu Academic of Agricultural Sciences, RL No. 50 Zhongling Road, Nanjing, Jiangsu 210014, China XX FH Key Location/Qualifiers FH FT source 1. .1674 FT /organism="Southern rice black-streaked dwarf virus" FT /segment="S10" FT /host="rice" FT /isolate="HNzhijiang29" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="Sep-2009" FT /db_xref="taxon:519497" FT CDS 1. .1674 FT /codon_start=1 FT /product="major capsid protein" FT /protein_id="AEP02571.1" FT /translation="MADIRLDIAPDLIHNGVPQRLSDTIILNNRPTITLLSHFNSLFHE FT SNIVKSPHIASSQTTVNLYIRKHLLTRLHDRLQTVETSTLPNITQLKEHIQSYFRNEHQ FT PIFQTLTNNNLSDEFLGVTTFGLSLFATSKLDAEQIERVQIETLTEGNVTLKPFSADGL FT EVILDDSYIGIIGKISGLEVHKLLDKCCREVPAQMGILTDEVKLLIRSGKLRIDGGYDF FT NCPASTTDVTHYGGYDQYSRQMFEKLNLFFNISLSIIPVSALKTIHVFEKELGALDADK FT SLLEQTWSGVSSFIETWKVKTKVKDEDQDEYELAGLSALRKGVDGNSVSSPYNDKKFIE FT WYSKTFAKIEKGSSLRKTEIEDKNTSGTSNITKQVKIHFPVQYFDEVKSNGHEKSVTVI FT TNKGEMSLESYRKIGEILSAIWKRGKALAAPCIDYIKLGVEKAYHLAPVIMKKYNLTID FT DIIHFIEIGPSYLAKLDKIDDWSLIAKLIITSVLPNIIQAVYKTDPSNNVMNSVIISRA FT NNLLKADRDRLIKKATTANSSTSNSNSEHGQKIVLNKVTR" XX SQ Sequence 1674 BP; 586 A; 293 C; 287 G; 508 T; 0 other; jf803440 Length: 1674 27-SEP-2011 Type: N Check: 6112 .. 1 atggctgaca taagacttga catagcgccc gatcttatcc ataatggtgt 51 gcctcaaaga ctttcagata cgataattct aaacaaccga ccaacaatca 101 cacttctgtc tcacttcaac tctctttttc acgaatcaaa cattgtcaaa 151 tcaccccaca tcgcgtcatc tcaaactact gttaatttat acattcgtaa 201 gcatttattg actcgacttc atgatagatt acaaactgtc gaaaccagta 251 ctctaccaaa cattactcaa cttaaagaac atattcaaag ttatttccgt 301 aatgaacatc aacctatttt ccaaaccctg actaacaata atcttagtga 351 tgaattttta ggtgtaacta cttttggttt aagtctattc gcaacttcaa 401 agttggatgc agaacaaata gaacgagtac aaattgagac cctaactgaa 451 ggaaacgtta cacttaaacc attctccgct gacggtttag aagtaatttt 501 agatgatagt tacatcggaa taattggaaa aatttctggt ttagaagtac 551 ataaattgct cgataaatgt tgtcgtgaag ttcctgctca aatgggaata 601 ttaactgacg aagttaaact tttaatacgt tccggaaaat taagaattga 651 cggtggatac gatttcaatt gtcctgctag tacaacagac gtgacgcact 701 atggcggtta tgaccaatat tcgagacaaa tgtttgaaaa attgaatttg 751 ttctttaata tcagtttgag cattattcct gtttctgcac ttaaaactat 801 tcatgtattt gagaaagaac taggtgcttt agatgctgac aaatcacttt 851 tagaacaaac atggagcgga gtctcctcat ttattgaaac ctggaaagta 901 aaaactaaag ttaaagatga agatcaagat gagtacgaac tagctggact 951 gtctgcactt agaaaaggag tcgatggtaa ttctgtatct agcccttaca 1001 atgataagaa attcatcgaa tggtattcta agacgtttgc taaaatagag 1051 aaaggttcat cgttgcgtaa gactgaaatt gaagacaaaa atacgtccgg 1101 tacttcaaac ataacaaagc aagttaaaat tcattttcct gttcagtatt 1151 tcgatgaagt caaatctaac ggtcatgaaa aaagtgttac tgtaatcact 1201 aataaaggtg aaatgtcatt ggaatcttac cgaaagatag gtgaaatatt 1251 aagtgcgatc tggaaacgtg gtaaggcatt agctgctccc tgcatcgatt 1301 acatcaaact tggtgtcgaa aaagcttatc acttagctcc tgtaatcatg 1351 aagaaatata atttaactat tgatgatata attcatttta ttgaaattgg 1401 tccttcatac ttagcgaaat tggataaaat tgatgattgg tccttaattg 1451 caaaattgat tattaccagt gttttgccaa acatcattca agcggtgtat 1501 aaaacagatc ctagcaataa tgttatgaat tcagtcatta tcagcagagc 1551 taacaattta ttgaaggcgg atcgcgatcg tttaattaag aaagctacca 1601 ctgcaaattc atctaccagt aattcaaatt cagaacatgg tcaaaagatt 1651 gtgttaaata aagtcaccag atga