Sequence of DPV East African cassava mosaic virus
East African cassava mosaic virus-Kenya isolate Comoros:Anjouan:AJ29BE2:2009 segment DNA-A, complete sequence.
ACC No: JF909076
Dated: 2012-12-05 | Length: 2801 | CRC: -861880033
ID JF909076; SV 1; circular; genomic DNA; STD; VRL; 2801 BP.
XX
AC JF909076;
XX
DT 21-JUN-2012 (Rel. 113, Created)
DT 05-DEC-2012 (Rel. 115, Last updated, Version 3)
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DE East African cassava mosaic virus-Kenya isolate
DE Comoros:Anjouan:AJ29BE2:2009 segment DNA-A, complete sequence.
XX
KW .
XX
OS East African cassava mosaic virus-Kenya
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RC Publication Status: Online-Only
RP 1-2801
RX PUBMED; 23186303.
RA De Bruyn A., Villemot J., Lefeuvre P., Villar E., Hoareau M.,
RA Harimalala M., Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B.,
RA Harkins G.W., Varsani A., Martin D.P., Lett J.M.;
RT "East African cassava mosaic-like viruses from Africa to Indian ocean
RT islands: molecular diversity, evolutionary history and geographical
RT dissemination of a bipartite begomovirus";
RL BMC Evol. Biol. 12(1):228-228(2012).
XX
RN [2]
RP 1-2801
RA Villemot J., Lefeuvre P., Villar E., Hoareau M., Harimalala M.,
RA Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., Varsani A., Martin D.P.,
RA Lett J.-M.;
RT ;
RL Submitted (24-MAR-2011) to the INSDC.
RL UMR PVBMT, CIRAD, 7, chemin de l'IRAT, Saint-Pierre, Reunion 97410, France
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FH Key Location/Qualifiers
FH
FT source 1. .2801
FT /organism="East African cassava mosaic virus-Kenya"
FT /segment="DNA-A"
FT /host="Manihot esculenta (cassava)"
FT /isolate="Comoros:Anjouan:AJ29BE2:2009"
FT /mol_type="genomic DNA"
FT /country="Comoros:Anjouan"
FT /lat_lon="12.19 S 44.51 E"
FT /collection_date="2009"
FT /db_xref="taxon:1229189"
FT gene 174. .530
FT /gene="AV2"
FT CDS 174. .530
FT /codon_start=1
FT /gene="AV2"
FT /product="movement protein"
FT /protein_id="AEG89790.1"
FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL
FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS
FT EAEDVQNVSKPRCP"
FT gene 334. .1107
FT /gene="AV1"
FT CDS 334. .1107
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="AEG89789.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA
FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGSGITHR
FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGPSPQDFGQVFNMFDNE
FT PTTATVKNDLRDRYQVLRKVYATVVGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYEN
FT HTENALLWYMACTHASNPVYATLKIRIYFYDAVTN"
FT gene complement(1104. .1508)
FT /gene="AC3"
FT CDS complement(1104. .1508)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer"
FT /protein_id="AEG89793.1"
FT /translation="MDSRTGALITAPQAKNGVFTWEITNPLYFDITNHDKRPGNMNHDI
FT ITLQIRFNHNLRKALAIHKCFLNFKVWTTLRPQTGLFLRVFRYQVLKYLDMIGVISINT
FT VITAVAHVLYDVLLNTLQVTEQHAIKFNLY"
FT gene complement(1249. .1656)
FT /gene="AC2"
FT CDS complement(1249. .1656)
FT /codon_start=1
FT /gene="AC2"
FT /product="transcription activator protein"
FT /protein_id="AEG89792.1"
FT /translation="MPPSSPSTSHCSQVPIKVQHRTAKTRALRRRRVDLECGCSFYLHI
FT DCINHGFSHRGTHHCASSKEWRFYLGNNKSPLFRHHQPRQAAREHEPRHHHTPDTFQPQ
FT PPEGIGDSQVFSQLQGLDDLTASDWSFLKSI"
FT gene complement(1565. .2644)
FT /gene="AC1"
FT CDS complement(1565. .2644)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication associated protein"
FT /protein_id="AEG89791.1"
FT /translation="MPRAGRFQINAKNYFITYPRCSLTMEEAISQLKALSYPTNIKFIR
FT VCRELHQDGVPHLHVLIQFEGKFQCTNQRFFDLISPSRSTHFHPNIQGAKSSSDVKAYI
FT EKGGEFLDDGIFQVDARSARGEGQHLAQVYADALNASSKSEALQIIKEKDPKSFFLQFH
FT NISANADRIFQAPPQTYVSPFLSSSFTHVPEDIEVWVSENICSPAARPWRPVSIVLEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKNQSLKAWALKNATFVTLHEPL
FT FSSAHQSPTPHSEDQGPQT"
FT gene complement(2254. .2487)
FT /gene="AC4"
FT CDS complement(2254. .2487)
FT /codon_start=1
FT /gene="AC4"
FT /product="C4 protein"
FT /protein_id="AEG89794.1"
FT /translation="MGCLISMFLSNSKASSNVQTRDSSISFPRPDQHISIRTFRELNHR
FT PMSKLTLKREGNFLTMEFSRSMPEVHGGRASI"
XX
SQ Sequence 2801 BP; 735 A; 560 C; 729 G; 777 T; 0 other;
jf909076 Length: 2801 05-DEC-2012 Type: N Check: 5246 ..
1 accggatggc cgcgcccgaa aaagcaggtg gaccccaccg gatggccgcg
51 cccgtgaaag atagtggtcc ccgcgcacgt gtttcggtcg gccagtcata
101 tttacgcgtg aaagactaga tatttgttgt ttgtctgtat agacttcgtc
151 gcgaagtagt gaagcgcgtc aacatgtggg atccattgtt gaacgatttc
201 cctgaaaccg ttcacggttt ccgttctatg cttgctgtta aatacctgtt
251 acatctggaa caggaatacg atcgcggtac tgtcggggcg gagtatatac
301 gggatctaat aggggttcta cggtgtaaga gttatgtcga agcgaccagg
351 agatataata atctcaacac ccgtatccaa ggtgcggagg aggctgaact
401 tcgacagccc atacacgaac cgtgttgttg cccccactgt ccgcgtcacc
451 agaagcaaaa tatgggccaa caggcccatg tatcggaagc cgaagatgta
501 cagaatgtat cgaagcccag atgtccctaa gggctgtgaa ggcccatgta
551 aggttcagtc gtatgaacag agggatgatg ttaagcacac gggtatggtt
601 cgatgtgtca gtgatgttac tcgtgggtca ggcatcaccc atagagtcgg
651 gaagaggttt tgtgtgaagt ccatatatat attgggcaag atctggatgg
701 atgagaatat caagaagcaa aatcatacga accatgttat gttcttcctc
751 gttcgagata gaaggcctta tggtccgagc ccgcaagatt ttggacaagt
801 gttcaacatg tttgataatg aacctactac ggcaacggta aagaatgatc
851 tgagggaccg gtatcaggtg ttacgaaaag tctatgcgac cgttgttggt
901 ggaccctccg ggatgaagga acaagcgctg gttaagaggt tttttaggat
951 caataatcat gtagtgtata atcatcagga acaggccaag tatgagaatc
1001 atacggaaaa tgcgttgtta tggtatatgg catgtacaca tgcctcaaat
1051 cctgtgtacg ctactctgaa aatacgcatc tatttctatg atgcagtgac
1101 aaattaataa aggttgaatt ttattgcatg ttgctccgta acttggagtg
1151 tgtttagtaa tacatcgtac agaacatgag caacagctgt aattacagtg
1201 ttaatggaaa taacgcctat catatctaaa tacttgagca cttgatatct
1251 aaatactctt aagaaaagac cagtctgagg ccgtaaggtc gtccagacct
1301 tgaagttgag aaaacacttg tgaatcgcca atgccttccg gaggttgtgg
1351 ttgaaacgta tctggagtgt gatgatgtcg tggttcatgt tccctggccg
1401 cttgtcgtgg ttggtgatgt cgaaatagag gggatttgtt atttcccagg
1451 taaaaacgcc attctttgct tgaggcgcag tgatgagtgc ccctgtgcga
1501 gaatccatgg ttgatgcagt cgatatggag atagaacgag cagccacatt
1551 cgaggtctac ccgcctacgt ctgagggccc tggtcttcgc tgtgcggtgt
1601 tggactttga tgggcacttg agaacaatgg ctcgtggagg gtgacgaagg
1651 tggcattctt taaagcccag gctttaaggg actgattctt ttcctcgtcc
1701 agaaactctt tatatgatga tgttggtcct ggattgcaga ggaagatagt
1751 gggaatgccg cctttaattt gaattggctt cccgtacttt gtattgcttt
1801 gccagtccct ttgggccccc atgaattctt tgaagtgctt tagataatgc
1851 gggtctacgt cgtcaatgac gttgtaccat gcgtcgtttg aatatacctt
1901 tggagacaga tccaggtgtc cacatagata attatggggt cccagtgaac
1951 gagcccacat ggtttttccg gttcggctat caccttcgag aacaatactg
2001 accggtcgcc atggccgcgc agcgggactg catatatttt ctgataccca
2051 tacctctatg tcttcgggaa cgtgtgtaaa tgatgatgat aagaacggac
2101 taacgtaagt ttgtggcgga gcctggaaga ttcgatctgc gttagcagat
2151 atgttatgga actgtaaaaa aaaggacttg ggatcttttt ctttaataat
2201 ttgaagagct tcggatttag aagaagcatt caacgcgtct gcatatacct
2251 gagctaaatg ctggccctcc ccccgtgcac ttctggcatc gacctggaaa
2301 attccatcgt caagaaattc ccctcccttt tcaatgtaag ctttgacatc
2351 ggacgatgat ttagctccct gaatgttcgg atggaaatgt gttgatctgg
2401 acggggaaat gagatcgaag aatctctggt ttgtacattg gaacttgcct
2451 tcgaattgga taagaacatg gagatgaggc accccatcct gatgtagttc
2501 tctgcaaacc ctaatgaatt tgatattcgt cgggtaagaa agggctttta
2551 attgggaaat ggcctcttcc atggttaatg agcatcgggg ataggtgatg
2601 aaataatttt tggcatttat ttgaaaacga ccggctcttg gcatatttgc
2651 tgtcgtttgg gatcggtgga cactcaaaac tccaggggaa tggtggaacg
2701 gtgggcatta tatatgatgt cccccaatgg catatgtgta aataggtgaa
2751 cctccattca aatttcgaaa tgcgaatatt ggcggccatc cgattaatat
2801 t