Sequence of DPV East African cassava mosaic Kenya virus
East African cassava mosaic Kenya virus isolate Comoros:Grande-Comore:GC11B32:2008 segment DNA-A, complete sequence.
ACC No: JF909088
Dated: 2012-12-05 | Length: 2799 | CRC: -890817190
ID JF909088; SV 1; circular; genomic DNA; STD; VRL; 2799 BP.
XX
AC JF909088;
XX
DT 21-JUN-2012 (Rel. 113, Created)
DT 05-DEC-2012 (Rel. 115, Last updated, Version 3)
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DE East African cassava mosaic Kenya virus isolate
DE Comoros:Grande-Comore:GC11B32:2008 segment DNA-A, complete sequence.
XX
KW .
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OS East African cassava mosaic Kenya virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RC Publication Status: Online-Only
RP 1-2799
RX PUBMED; 23186303.
RA De Bruyn A., Villemot J., Lefeuvre P., Villar E., Hoareau M.,
RA Harimalala M., Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B.,
RA Harkins G.W., Varsani A., Martin D.P., Lett J.M.;
RT "East African cassava mosaic-like viruses from Africa to Indian ocean
RT islands: molecular diversity, evolutionary history and geographical
RT dissemination of a bipartite begomovirus";
RL BMC Evol. Biol. 12(1):228-228(2012).
XX
RN [2]
RP 1-2799
RA Villemot J., Lefeuvre P., Villar E., Hoareau M., Harimalala M.,
RA Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., Varsani A., Martin D.P.,
RA Lett J.-M.;
RT ;
RL Submitted (24-MAR-2011) to the INSDC.
RL UMR PVBMT, CIRAD, 7, chemin de l'IRAT, Saint-Pierre, Reunion 97410, France
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FH Key Location/Qualifiers
FH
FT source 1. .2799
FT /organism="East African cassava mosaic Kenya virus"
FT /segment="DNA-A"
FT /host="Manihot esculenta (cassava)"
FT /isolate="Comoros:Grande-Comore:GC11B32:2008"
FT /mol_type="genomic DNA"
FT /country="Comoros:Grande-Comore"
FT /lat_lon="11.5 S 43.45 E"
FT /collection_date="2008"
FT /db_xref="taxon:393599"
FT gene 175. .531
FT /gene="AV2"
FT CDS 175. .531
FT /codon_start=1
FT /gene="AV2"
FT /product="movement protein"
FT /protein_id="AEG89862.1"
FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL
FT IGVLRCKNYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS
FT EAQDVQNVSKPRCS"
FT gene 335. .1108
FT /gene="AV1"
FT CDS 335. .1108
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="AEG89861.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA
FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGSGITHR
FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGQSPQDFGQVFNMFDNE
FT PTTATVKNDLRDRYQVLRKFYTTVVGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYEN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN"
FT gene complement(1105. .1509)
FT /gene="AC3"
FT CDS complement(1105. .1509)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer"
FT /protein_id="AEG89865.1"
FT /translation="MDSRTGELITAPQAKNGVFTWEITNPLYFDITNHDRRPGNMNHDI
FT ITFQIRFNHNIRKALGIHKCFLNFKVWTTLRPPTGLFLKVFRYQVLKYLDMIGVISINT
FT VIQAVAHVLYNVLLNTLQVTEQHAIKFNLY"
FT gene complement(1250. .1657)
FT /gene="AC2"
FT CDS complement(1250. .1657)
FT /codon_start=1
FT /gene="AC2"
FT /product="transcription activator protein"
FT /protein_id="AEG89864.1"
FT /translation="MPPSSPSTSHCSQVPIKVQHRTAKTRAVRRRRVDLECGCSFYLHI
FT DCINHGFSHRGTHHCASSKEWRFYLGNNKSPLFRHHQPRQETREHEPRHHHIPDTVQPQ
FT HSEGIGDSQVFSQLQGLDDLTASDWSFLKSI"
FT gene complement(1581. .2645)
FT /gene="AC1"
FT CDS complement(1581. .2645)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication associated protein"
FT /protein_id="AEG89863.1"
FT /translation="MPRAGRFSIKAKNYFLTYPKCSLSKEEALDQLRQLQTPTNKLFIK
FT ICRELHENGEPHLHALIQFEGKYNCTNQRFFDLISPSRSAHFHPNIQGAKSSSDVKSYL
FT DKDGDTIQWGEFQIDGRSARGGQQSANDAYARALNSANKSEALNVIRELAPKDFVLQFH
FT NLNSNLERIFQEPLTPYISPFLSSSFTNVPEELEAWVSENVMGSAARPWRPSSIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKNQSLKAWALKNATFITLHEPL
FT FSSAHQSPTPHSED"
FT gene complement(2198. .2494)
FT /gene="AC4"
FT CDS complement(2198. .2494)
FT /codon_start=1
FT /gene="AC4"
FT /product="C4 protein"
FT /protein_id="AEG89866.1"
FT /translation="MKMGNLICMPSFSSKASTIVPINDSSTSYPLPDQHISTPIFRELN
FT QAPTSSPIWIKTETPSNGASFRSTDDLLEADNNPPMTLTPGLLTQQISQRLLM"
XX
SQ Sequence 2799 BP; 730 A; 557 C; 719 G; 793 T; 0 other;
jf909088 Length: 2799 05-DEC-2012 Type: N Check: 717 ..
1 accggatggc cgcgcccgaa aaaagcaggt ggaccccaca agatggccgc
51 gcccgttaaa gaaagtggtc cccgcgcact tgtgttggtc ggccagtcat
101 attcacgcgt gaaagtctag atatgtgttg tttgtcttta tagacttcgt
151 cgcgaagtag tggagcgcgt caacatgtgg gatccattgt tgaacgattt
201 tcccgaaacc gttcacggtt tccgttctat gcttgctgtt aaatacctgt
251 tacatctgga acaggaatac gatcgcggta ctgtcggggc ggagtatata
301 cgtgatttaa taggggttct acggtgtaag aattatgtcg aagcgaccag
351 gagatataat aatctcaaca cccgtatcca aggtgcggag gaggctgaac
401 ttcgacagcc catacacgaa ccgtgttgtt gcccccactg tccgcgtcac
451 cagaagcaaa atatgggcca acaggcccat gtatcggaag cccaagatgt
501 acagaatgta tcgaagccca gatgttccta agggctgtga aggcccatgt
551 aaggttcagt cctatgaaca gagggatgat gtgaagcaca ctggtatggt
601 ccgatgtgtc agtgatgtta cgcgtggatc aggcattacc catagagtcg
651 ggaagaggtt ttgtgtgaag tccatatata tattgggcaa gatttggatg
701 gatgagaata tcaagaagca aaatcatacg aaccatgtta tgttcttcct
751 tgttcgagat agaaggcctt atggtcagag tcctcaagat tttggacaag
801 tgttcaacat gtttgataat gaacctacta cggcaactgt gaagaatgat
851 cttagggacc gatatcaggt gttacgtaaa ttctatacga ctgttgttgg
901 tggaccctct gggatgaagg aacaagctct ggttaagagg ttttttagga
951 tcaataatca tgtagtgtat aatcatcagg aacaggccaa gtatgagaat
1001 catactgaga atgcgttgtt attgtatatg gcatgtacac atgcctcgaa
1051 tcctgtatac gctacgctga aaatacgcat ctatttctat gatgcagtga
1101 caaattaata aaggttgaat tttattgcat gttgctccgt aacttggagt
1151 gtgtttagta atacattgta cagaacatga gcaacagctt gaattacagt
1201 gttaatggaa ataacgccta tcatatctaa atacttgagc acttgatatc
1251 taaatacttt taagaaaaga ccagtcggag gccgtaaggt cgtccagacc
1301 ttgaagttga gaaaacactt gtgaatcccc aatgccttcc gaatgttgtg
1351 gttgaaccgt atctggaatg tgatgatgtc gtggttcatg ttccctggtc
1401 tcctgtcgtg gttggtgatg tcgaaataga ggggatttgt tatttcccag
1451 gtaaaaacgc cattctttgc ttgaggcgca gtgatgagtt cccctgtgcg
1501 agaatccatg attgatgcag tcgatatgga gatagaacga gcagccgcat
1551 tcgaggtcta cccgcctacg tctgacggcc ctagtcttcg ctgtgcggtg
1601 ttggactttg atgggcactt gagaacaatg gctcgtggag ggtgatgaag
1651 gtggcattct ttaaagccca agctttaagg gactgattct tttcctcgtc
1701 cagaaactct ttatatgatg atgttggtcc tggattgcat aggaagatag
1751 tgggaatgcc gcctttaatt tgaattggct tcccgtactt tgtattgctt
1801 tgccagtccc gttgggcccc catgaattct ttgaaatgct tgaggtagtg
1851 ggggtcgacg tcatcaatga cgttgtacca tgcgtcgttg ctgtatacct
1901 ttggactcag atccaggtgt ccacacaagt agttatgtgg tcccaaagag
1951 cgagcccaca ttgtcttccc tgtcctacta tctccctcga tgacgatact
2001 actaggtctc catggccgcg cagcggaacc catcacgttc tcggaaaccc
2051 atgcttcaag ttcctcagga acgttagtga aagaagaaga aagaaaggga
2101 gaaatataag gagtgagagg ctcttgaaaa atcctctcta aattgctatt
2151 taaattatga aactgtaaaa caaaatcttt tggggctagt tcccgtatta
2201 cattaagagc ctctgactta tttgctgagt taagagccct ggcgtaagcg
2251 tcattggcgg attgttgtcc gcctcgagca gatcgtccgt cgatctgaaa
2301 ctcgccccat tggatggtgt ctccgtcttt atccagatag gacttgacgt
2351 cggagcttga tttagctccc tgaatattgg ggtggaaatg tgctgatcgg
2401 gaaggggata tgaggtcgaa gaatcgttga ttggtacaat tgtacttgcc
2451 ttcgaactga atgagggcat gcagatgagg ttccccattt tcatggagct
2501 ctctgcagat cttgatgaac aatttatttg ttggtgtttg gagttgtcgg
2551 agctgatcca aggcctcttc tttcgataga gaacatttgg gatatgtgag
2601 gaaatagttt ttggctttga tgctaaaacg accagccctt ggcatttgcg
2651 ctgtcgtata gcaatcgggg ggcactcaaa gtctgtagca atcgggggaa
2701 tgggggggca atttatatga tgccccccaa atggcattta tgtaatatcc
2751 tcatgaattt tgaatttgaa acgtggaaag cggccatccg tataatatt