Sequence of DPV East African cassava mosaic Kenya virus
East African cassava mosaic Kenya virus isolate Comoros:Grande-Comore:GC33BN1:2009 segment DNA-A, complete sequence.
ACC No: JF909113
Dated: 2012-12-05 | Length: 2799 | CRC: -1551533194
ID JF909113; SV 1; circular; genomic DNA; STD; VRL; 2799 BP. XX AC JF909113; XX DT 21-JUN-2012 (Rel. 113, Created) DT 05-DEC-2012 (Rel. 115, Last updated, Version 3) XX DE East African cassava mosaic Kenya virus isolate DE Comoros:Grande-Comore:GC33BN1:2009 segment DNA-A, complete sequence. XX KW . XX OS East African cassava mosaic Kenya virus OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2799 RX PUBMED; 23186303. RA De Bruyn A., Villemot J., Lefeuvre P., Villar E., Hoareau M., RA Harimalala M., Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., RA Harkins G.W., Varsani A., Martin D.P., Lett J.M.; RT "East African cassava mosaic-like viruses from Africa to Indian ocean RT islands: molecular diversity, evolutionary history and geographical RT dissemination of a bipartite begomovirus"; RL BMC Evol. Biol. 12(1):228-228(2012). XX RN [2] RP 1-2799 RA Villemot J., Lefeuvre P., Villar E., Hoareau M., Harimalala M., RA Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., Varsani A., Martin D.P., RA Lett J.-M.; RT ; RL Submitted (24-MAR-2011) to the INSDC. RL UMR PVBMT, CIRAD, 7, chemin de l'IRAT, Saint-Pierre, Reunion 97410, France XX FH Key Location/Qualifiers FH FT source 1. .2799 FT /organism="East African cassava mosaic Kenya virus" FT /segment="DNA-A" FT /host="Manihot esculenta (cassava)" FT /isolate="Comoros:Grande-Comore:GC33BN1:2009" FT /mol_type="genomic DNA" FT /country="Comoros:Grande-Comore" FT /lat_lon="11.48 S 43.31 E" FT /collection_date="2009" FT /db_xref="taxon:393599" FT gene 174. .539 FT /gene="AV2" FT CDS 174. .539 FT /codon_start=1 FT /gene="AV2" FT /product="movement protein" FT /protein_id="AEG90012.1" FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS FT EAQDVQNVSKPRCSEGL" FT gene 334. .1107 FT /gene="AV1" FT CDS 334. .1107 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /protein_id="AEG90011.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGSGITHR FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGQSPQDFGQVFNMFDNE FT PTTATVKNDLRDRYQVLRKFYTTVVGGPSGMKEQSLVKRFFRINNHVVYNHQEQAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT gene complement(1104. .1508) FT /gene="AC3" FT CDS complement(1104. .1508) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer" FT /protein_id="AEG90015.1" FT /translation="MDSRTGELITAPQAKNGVFTWEITNPLYFDITNHDRRPGNMNHDI FT ITIQIRFNHNIRKALGIHKCFLNFKVWTTLRPPTGLFLKVFRYQVLKYLDMIGVISINT FT VIQAVDHVLYNVLLNTLQVTEQHAIKFNLY" FT gene complement(1249. .1656) FT /gene="AC2" FT CDS complement(1249. .1656) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /protein_id="AEG90014.1" FT /translation="MPPSSPSTSNCSQVPIKVQHRTAKTRAVRRRRVDLECGCSFYLHI FT DCINHGFSHRGTHHCASSKEWRFYLGNNKSPLFRHHQPRQETREHEPRHHHNPDTVQPQ FT HPEGIGDSQMFSQLQGLDDLTASDWSFLKSI" FT gene complement(1580. .2644) FT /gene="AC1" FT CDS complement(1580. .2644) FT /codon_start=1 FT /gene="AC1" FT /product="replication associated protein" FT /protein_id="AEG90013.1" FT /translation="MPRAGRFSIKAKNYFLTYPRCSLSKEEALDQLRQLQTPTNKLFIK FT ICRELHENGEPHLHALIQFEGKYNCTNQRFFDLISPSRSAHFHPNIQGAKSSSDVKSYL FT DKDGDTIQWGEFQIDGRSARGGQQSANDAYAKALNSANKSEALNVIRELAPKDFVLQFH FT NLNSNLERIFQEPLTPYISPFLSSSFTNVPEELEAWVSENVMGSAARPWRPSSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKNQSLKAWALKNATFITLHEQL FT FSSAHQSPTPHSED" FT gene complement(2197. .2493) FT /gene="AC4" FT CDS complement(2197. .2493) FT /codon_start=1 FT /gene="AC4" FT /product="C4 protein" FT /protein_id="AEG90016.1" FT /translation="MKMGNLICMPSFSSKASTIVPTNDSSTSYPLPGQPISTQIFRELN FT QAPTSSPIWIRTETPSNGASFRSTDDLLEADNNPPMTLTPRLLTQQISQRLLM" XX SQ Sequence 2799 BP; 722 A; 562 C; 723 G; 792 T; 0 other; jf909113 Length: 2799 05-DEC-2012 Type: N Check: 9437 .. 1 accggatggc cgcgcccgaa aaaagcaggt ggccccacaa gatggccgcg 51 cccgttaaag aaagtggtcc ccgcgcactt gtgttggtcg gccagtcata 101 ttcacgcgtg aaagtctaga tattggttgt ttgtctttat agacttcgtc 151 gcgaagtagt ggagcgcgtc aacatgtggg atccattgtt gaacgatttt 201 cccgaaaccg ttcacggttt ccgttctatg cttgctgtta aatacctgtt 251 acatctggaa caggaatacg atcgcggtac tgtcggggcg gagtatatac 301 gtgatttaat aggggttcta cggtgtaaga gttatgtcga agcgaccagg 351 agatataata atctcaacac ccgtatccaa ggtgcggagg aggctgaact 401 tcgacagccc atacacgaac cgtgttgttg cccccactgt ccgcgtcacc 451 agaagcaaaa tatgggccaa caggcccatg tatcggaagc ccaagatgta 501 cagaatgtat cgaagcccag atgttccgaa gggctgtgaa ggcccatgta 551 aggttcagtc ctatgaacag agggatgatg tgaagcacac tggtatggtc 601 cgatgtgtta gtgatgttac tcgtggatca ggcattaccc atagagtcgg 651 gaagaggttt tgtgtgaagt ccatatatat attgggcaag atttggatgg 701 atgagaatat caagaagcaa aatcatacga accatgttat gttcttcctt 751 gttcgagata gaaggcctta tggtcagagt cctcaagatt ttggacaagt 801 gttcaacatg ttcgataatg aacccactac ggcaactgtg aagaatgatc 851 ttagggaccg atatcaggtg ttacgtaaat tttatacgac tgttgttggt 901 ggaccctctg ggatgaagga acaatctctg gttaagaggt tttttaggat 951 caataatcat gtagtgtata atcatcagga acaggccaag tatgagaacc 1001 atactgagaa tgcgttgtta ttgtatatgg catgtacaca tgcctcgaat 1051 cctgtgtacg ctacgctgaa aatacgcatc tatttctatg atgcagtgac 1101 aaattaataa aggttgaatt ttattgcatg ttgctccgta acttggagtg 1151 tgtttagtaa tacattgtac agaacatgat caacagcttg aattacagtg 1201 ttaatggaaa taacgcctat catatctaaa tacttgagca cctgatatct 1251 aaatactttt aagaaaagac cagtcggagg ccgtaaggtc gtccagacct 1301 tgaagttgag aaaacatttg tgaatcccca atgccttccg gatgttgtgg 1351 ttgaaccgta tctggattgt gatgatgtcg tggttcatgt tccctggtct 1401 cctgtcgtgg ttggtgatgt cgaaatagag gggatttgtt atttcccagg 1451 taaaaacgcc attctttgct tgaggcgcag tgatgagttc ccctgtgcga 1501 gaatccatga ttgatgcagt cgatatggag atagaacgag cagccgcatt 1551 cgaggtctac ccgcctacgt ctgacggccc tagtcttcgc tgtgcggtgt 1601 tggactttga tgggcacttg agaacaattg ctcgtggagg gtgatgaagg 1651 tggcattctt taaagcccag gctttaaggg actggttctt ttcctcgtcc 1701 agaaactctt tatatgatga tgttggtccg ggattgcata ggaagatagt 1751 gggaatgccg cctttaattt gaattggctt cccgtacttt gtattgcttt 1801 gccagtccct ttgggccccc atgaattctt tgaaatgctt gaggtagtgg 1851 gggtcgacgt catcaatgac gttgtaccat gcgtcgttac tgtatacctt 1901 tggactgaga tccaggtgtc cacacaagta gttatgtggg cccaaagagc 1951 gagcccacat tgtcttccct gtcctactat ctccctcgat gacgatacta 2001 ctcggtctcc atggccgcgc agcggaaccc atcacgttct cggaaaccca 2051 ggcttcaagt tcctcaggaa cgttagtgaa agaagaagaa agaaatggag 2101 aaatataagg agtgagaggc tcttgaaaaa tcctctctaa attgctattt 2151 aaattatgaa actgtaaaac aaaatctttt ggggctagtt cccgtattac 2201 attaagagcc tctgacttat ttgctgagtt aagagccttg gcgtaagcgt 2251 cattggcgga ttgttgtccg cctcgagcag atcgtccgtc gatctgaaac 2301 tcgccccatt ggatggtgtc tccgtcctta tccagatagg acttgacgtc 2351 ggagcttgat ttagctccct gaatatttgg gtggaaatgg gctgaccggg 2401 aaggggatat gaggtcgaag aatcgttggt tggtacaatt gtacttgcct 2451 tcgaactgaa tgagggcatg cagatgaggt tccccatttt catggagctc 2501 tctgcagatc ttgatgaaca atttatttgt tggtgtttgg agttgtcgga 2551 gctgatccaa ggcctcttct ttcgatagag aacatctggg atatgtgagg 2601 aaatagtttt tggctttgat gctaaaacga ccagcccttg gcatttgcgc 2651 tgtcgtatag caatcggggg ggcactcaaa gtctgtagca atcgggggaa 2701 tgggggggca atttatatga tgccccccaa atggcattta tgtaatatcc 2751 tcatgaaatt tgaatttcac acgtggaaag cggccatccg tataatatt