Sequence of DPV East African cassava mosaic virus
East African cassava mosaic virus-Kenya isolate Comoros:Mayotte:YT09B65:2005 segment DNA-A, complete sequence.
ACC No: JF909168
Dated: 2012-12-05 | Length: 2801 | CRC: -1320349234
ID JF909168; SV 1; circular; genomic DNA; STD; VRL; 2801 BP.
XX
AC JF909168;
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DT 21-JUN-2012 (Rel. 113, Created)
DT 05-DEC-2012 (Rel. 115, Last updated, Version 3)
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DE East African cassava mosaic virus-Kenya isolate
DE Comoros:Mayotte:YT09B65:2005 segment DNA-A, complete sequence.
XX
KW .
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OS East African cassava mosaic virus-Kenya
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RC Publication Status: Online-Only
RP 1-2801
RX PUBMED; 23186303.
RA De Bruyn A., Villemot J., Lefeuvre P., Villar E., Hoareau M.,
RA Harimalala M., Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B.,
RA Harkins G.W., Varsani A., Martin D.P., Lett J.M.;
RT "East African cassava mosaic-like viruses from Africa to Indian ocean
RT islands: molecular diversity, evolutionary history and geographical
RT dissemination of a bipartite begomovirus";
RL BMC Evol. Biol. 12(1):228-228(2012).
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RN [2]
RP 1-2801
RA Villemot J., Lefeuvre P., Villar E., Hoareau M., Harimalala M.,
RA Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., Varsani A., Martin D.P.,
RA Lett J.-M.;
RT ;
RL Submitted (24-MAR-2011) to the INSDC.
RL UMR PVBMT, CIRAD, 7, chemin de l'IRAT, Saint-Pierre, Reunion 97410, France
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FH Key Location/Qualifiers
FH
FT source 1. .2801
FT /organism="East African cassava mosaic virus-Kenya"
FT /segment="DNA-A"
FT /host="Manihot esculenta (cassava)"
FT /isolate="Comoros:Mayotte:YT09B65:2005"
FT /mol_type="genomic DNA"
FT /country="Mayotte"
FT /lat_lon="12.79 S 45.18 E"
FT /collection_date="2005"
FT /db_xref="taxon:1229189"
FT gene 174. .530
FT /gene="AV2"
FT CDS 174. .530
FT /codon_start=1
FT /gene="AV2"
FT /product="movement protein"
FT /protein_id="AEG90342.1"
FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL
FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS
FT EAEAVQNVSKPRCP"
FT gene 334. .1107
FT /gene="AV1"
FT CDS 334. .1107
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="AEG90341.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA
FT NRPMYRKPKLYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHIGMVRCVSDVTRGSGITHR
FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGPSPQDFGQVFNMFDNE
FT PTTATVKNDLRDRYQVLRKFHATVVGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYEN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN"
FT gene complement(1104. .1508)
FT /gene="AC3"
FT CDS complement(1104. .1508)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer"
FT /protein_id="AEG90345.1"
FT /translation="MDSRTGELITAPQAKNGVFTWEITNPLYFEITNHDKRPGNMNHDI
FT ITLQIRFNHNLRKALAIHKCFLNFKVWTTLRPQTGLFLRVFRSQVLKYLDMIGVISINT
FT VIRAVDHVLYAVLLNTLQVTEQHAIKFNLY"
FT gene complement(1249. .1656)
FT /gene="AC2"
FT CDS complement(1249. .1656)
FT /codon_start=1
FT /gene="AC2"
FT /product="transcription activator protein"
FT /protein_id="AEG90344.1"
FT /translation="MPPSSPSTSHCSQVPIKVQHRTAKNRALRRRRVDLECGCSFYLHI
FT DCINHGFSHRGTHHCASSKEWRFYLGNNKSPLFRNHQPRQEAREHEPRHHHTPDTFQPQ
FT PPEGIGDSQVFSQLQGLDDLTASDWSFLKSI"
FT gene complement(1565. .2644)
FT /gene="AC1"
FT CDS complement(1565. .2644)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication associated protein"
FT /protein_id="AEG90343.1"
FT /translation="MPRAGRFQINAKNYFITYPRCSLTKEEALSQLKALSYPTNIKFIR
FT VCSELHQDGVPHLHVLIQFEGKFQCTNQRFFDLISPSRSSHFHPNIQGAKSSSDVKAYI
FT EKGGEFLDDGIFQVDARSARGEGQHLAQVYADALNASSKSEALQIIKEKDPKSFFLQFH
FT NISANADRIFQAPPQTYVSPFLSSSFTHVPEDIEVWVSNNICSPAARPWRPISIVLEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLGEDKNQSLKAWALKNATFVTLHEPL
FT FSSTHQSPTPHSEEQGPQT"
FT gene complement(2254. .2487)
FT /gene="AC4"
FT CDS complement(2254. .2487)
FT /codon_start=1
FT /gene="AC4"
FT /product="C4 protein"
FT /protein_id="AEG90346.1"
FT /translation="MGCLISMFSSNSKASSNVQTRDSLISFPRLDHHISIRTFRELNHR
FT PMSKLTLKREGNFLTMEFSRSMPEVQGGRASI"
XX
SQ Sequence 2801 BP; 735 A; 560 C; 720 G; 786 T; 0 other;
jf909168 Length: 2801 05-DEC-2012 Type: N Check: 6278 ..
1 accggatggc cgcgcccgaa aaagcaggcg gaccccacca gatggccgcg
51 cccgttaaag atagtggtcc ccgcgcactc gtttcggtcg gccagtcata
101 tttacgcgtg aaagtctaga tatttgttgt ttgtctttat agacttcgtc
151 gcgaagtagt gaagcgcgtc aacatgtggg atccattgtt gaacgatttc
201 ccagaaaccg tgcacggttt ccgttctatg cttgctgtta aatacctgtt
251 acatctggaa caggaatacg atcgcggtac tgtcggggct gagtacatac
301 gggatctaat aggggttcta cggtgtaaga gttatgtcga agcgaccagg
351 agatataata atctcaacac ccgtatccaa ggtgcggagg aggctgaact
401 tcgacagccc atacacgaac cgtgttgttg cccccactgt ccgcgtcacc
451 agaagcaaaa tatgggccaa caggcccatg tatcggaagc cgaagctgta
501 cagaatgtat cgaagcccag atgtccctaa gggctgtgaa ggcccatgta
551 aggttcagtc gtatgaacag agggatgatg ttaagcacat tggtatggtc
601 cgatgtgtca gtgatgttac tcgtgggtca ggcattaccc atagagtcgg
651 gaagaggttt tgtgtgaagt ccatatatat attgggcaag atctggatgg
701 atgagaatat caagaagcaa aatcatacga accatgttat gttcttcctc
751 gttcgagaca gaaggcctta tggtccgagc ccgcaagatt ttggacaagt
801 gttcaacatg tttgataatg aacctactac tgcaactgtg aagaatgatc
851 tgagggaccg gtatcaggtg ttacgtaaat tccatgcgac tgttgttggt
901 ggaccctccg ggatgaagga acaagcgctg gttaagaggt tttttaggat
951 caataatcat gtagtgtata atcatcagga acaggccaag tatgagaatc
1001 atactgagaa tgcgttgtta ttgtatatgg catgtacaca tgcctcaaat
1051 cctgtgtacg ctacgttgaa aatacgcatc tatttctatg atgcagtgac
1101 aaattaataa aggttgaatt ttattgcatg ttgctccgta acttggagtg
1151 tgtttagtaa tacagcgtac agaacatgat caacagctct aattacagtg
1201 ttaatggaaa taacgcctat catatctaaa tacttgagca cttgagatct
1251 aaatactctt aagaaaagac cagtctgagg ccgtaaggtc gtccagacct
1301 tgaagttgag aaaacacttg tgaatcgcca atgccttccg gaggttgtgg
1351 ttgaaacgta tctggagtgt gatgatgtcg tggttcatgt tccctggcct
1401 cttgtcgtgg ttggtgattt cgaaatagag gggatttgtt atttcccagg
1451 taaaaacgcc attctttgct tgaggcgcag tgatgagttc ccctgtgcga
1501 gaatccatgg ttgatgcagt cgatatggag atagaacgag cagccacatt
1551 cgaggtctac gcgcctacgt ctgagggccc tgttcttcgc tgtgcggtgt
1601 tggactttga tgggtacttg agaacaatgg ctcgtggagg gtgacgaagg
1651 tggcattctt taaagcccag gctttaaggg actgattctt atcctctccc
1701 agaaactctt tatatgatga tgttggtcct ggattgcaga ggaagatagt
1751 gggaatgccg cctttaattt gaattggctt cccgtacttt gtattgcttt
1801 gccagtccct ttgggccccc atgaattctt tgaagtgctt tagataatgc
1851 gggtctacgt cgtcaatgac gttgtaccat gcgtcgtttg aatatacctt
1901 tggagacaga tccaggtgtc cacatagata attatggggt cccagtgaac
1951 gagcccacat ggtttttccg gttcggctat caccttcgag aacaatactg
2001 atcggtctcc atggccgcgc agcgggactg cagatattgt ttgataccca
2051 gacctctatg tcttcgggga cgtgtgtaaa tgatgatgat aagaacggac
2101 taacgtaagt ttgtggcgga gcctggaaga ttctatctgc gttagcagat
2151 atgttatgga actgtaaaaa aaaggacttg ggatcttttt ctttaataat
2201 ttgaagagct tcggatttag aagaagcatt caacgcgtct gcatatacct
2251 gagctaaatg ctggccctcc ccccttgcac ttctggcatc gacctggaaa
2301 attccatcgt caagaaattc ccctcccttt tcaatgtaag ctttgacatc
2351 ggacgatgat ttagctccct gaatgttcgg atggaaatgt gatgatctag
2401 acggggaaat gagatcaaag aatctctggt ttgtacattg gaacttgcct
2451 tcgaattgga tgagaacatg gagatgaggc accccatcct gatgtagttc
2501 gctgcaaacc ctaatgaatt tgatattcgt cgggtaagaa agggctttta
2551 attgggaaag ggcctcttcc ttggttaatg aacatcgggg ataggtgatg
2601 aaataatttt tggcatttat ttgaaaacga ccggctctgg gcatatttgc
2651 tgtcgtattg gatcggtgga cactcaaaac tccaggggaa tggtggaacg
2701 gtgggcaata tatatgatgt cccccaatgg catatgtgta aataggtgaa
2751 cctccattca aaatttgaat tgcgagtatt ggcggccatc cgattaatat
2801 t