Sequence of DPV East African cassava mosaic virus
East African cassava mosaic virus-Kenya isolate Comoros:Mayotte:YT09B65:2005 segment DNA-A, complete sequence.
ACC No: JF909168
Dated: 2012-12-05 | Length: 2801 | CRC: -1320349234
ID JF909168; SV 1; circular; genomic DNA; STD; VRL; 2801 BP. XX AC JF909168; XX DT 21-JUN-2012 (Rel. 113, Created) DT 05-DEC-2012 (Rel. 115, Last updated, Version 3) XX DE East African cassava mosaic virus-Kenya isolate DE Comoros:Mayotte:YT09B65:2005 segment DNA-A, complete sequence. XX KW . XX OS East African cassava mosaic virus-Kenya OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2801 RX PUBMED; 23186303. RA De Bruyn A., Villemot J., Lefeuvre P., Villar E., Hoareau M., RA Harimalala M., Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., RA Harkins G.W., Varsani A., Martin D.P., Lett J.M.; RT "East African cassava mosaic-like viruses from Africa to Indian ocean RT islands: molecular diversity, evolutionary history and geographical RT dissemination of a bipartite begomovirus"; RL BMC Evol. Biol. 12(1):228-228(2012). XX RN [2] RP 1-2801 RA Villemot J., Lefeuvre P., Villar E., Hoareau M., Harimalala M., RA Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., Varsani A., Martin D.P., RA Lett J.-M.; RT ; RL Submitted (24-MAR-2011) to the INSDC. RL UMR PVBMT, CIRAD, 7, chemin de l'IRAT, Saint-Pierre, Reunion 97410, France XX FH Key Location/Qualifiers FH FT source 1. .2801 FT /organism="East African cassava mosaic virus-Kenya" FT /segment="DNA-A" FT /host="Manihot esculenta (cassava)" FT /isolate="Comoros:Mayotte:YT09B65:2005" FT /mol_type="genomic DNA" FT /country="Mayotte" FT /lat_lon="12.79 S 45.18 E" FT /collection_date="2005" FT /db_xref="taxon:1229189" FT gene 174. .530 FT /gene="AV2" FT CDS 174. .530 FT /codon_start=1 FT /gene="AV2" FT /product="movement protein" FT /protein_id="AEG90342.1" FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS FT EAEAVQNVSKPRCP" FT gene 334. .1107 FT /gene="AV1" FT CDS 334. .1107 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /protein_id="AEG90341.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA FT NRPMYRKPKLYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHIGMVRCVSDVTRGSGITHR FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGPSPQDFGQVFNMFDNE FT PTTATVKNDLRDRYQVLRKFHATVVGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT gene complement(1104. .1508) FT /gene="AC3" FT CDS complement(1104. .1508) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer" FT /protein_id="AEG90345.1" FT /translation="MDSRTGELITAPQAKNGVFTWEITNPLYFEITNHDKRPGNMNHDI FT ITLQIRFNHNLRKALAIHKCFLNFKVWTTLRPQTGLFLRVFRSQVLKYLDMIGVISINT FT VIRAVDHVLYAVLLNTLQVTEQHAIKFNLY" FT gene complement(1249. .1656) FT /gene="AC2" FT CDS complement(1249. .1656) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /protein_id="AEG90344.1" FT /translation="MPPSSPSTSHCSQVPIKVQHRTAKNRALRRRRVDLECGCSFYLHI FT DCINHGFSHRGTHHCASSKEWRFYLGNNKSPLFRNHQPRQEAREHEPRHHHTPDTFQPQ FT PPEGIGDSQVFSQLQGLDDLTASDWSFLKSI" FT gene complement(1565. .2644) FT /gene="AC1" FT CDS complement(1565. .2644) FT /codon_start=1 FT /gene="AC1" FT /product="replication associated protein" FT /protein_id="AEG90343.1" FT /translation="MPRAGRFQINAKNYFITYPRCSLTKEEALSQLKALSYPTNIKFIR FT VCSELHQDGVPHLHVLIQFEGKFQCTNQRFFDLISPSRSSHFHPNIQGAKSSSDVKAYI FT EKGGEFLDDGIFQVDARSARGEGQHLAQVYADALNASSKSEALQIIKEKDPKSFFLQFH FT NISANADRIFQAPPQTYVSPFLSSSFTHVPEDIEVWVSNNICSPAARPWRPISIVLEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLGEDKNQSLKAWALKNATFVTLHEPL FT FSSTHQSPTPHSEEQGPQT" FT gene complement(2254. .2487) FT /gene="AC4" FT CDS complement(2254. .2487) FT /codon_start=1 FT /gene="AC4" FT /product="C4 protein" FT /protein_id="AEG90346.1" FT /translation="MGCLISMFSSNSKASSNVQTRDSLISFPRLDHHISIRTFRELNHR FT PMSKLTLKREGNFLTMEFSRSMPEVQGGRASI" XX SQ Sequence 2801 BP; 735 A; 560 C; 720 G; 786 T; 0 other; jf909168 Length: 2801 05-DEC-2012 Type: N Check: 6278 .. 1 accggatggc cgcgcccgaa aaagcaggcg gaccccacca gatggccgcg 51 cccgttaaag atagtggtcc ccgcgcactc gtttcggtcg gccagtcata 101 tttacgcgtg aaagtctaga tatttgttgt ttgtctttat agacttcgtc 151 gcgaagtagt gaagcgcgtc aacatgtggg atccattgtt gaacgatttc 201 ccagaaaccg tgcacggttt ccgttctatg cttgctgtta aatacctgtt 251 acatctggaa caggaatacg atcgcggtac tgtcggggct gagtacatac 301 gggatctaat aggggttcta cggtgtaaga gttatgtcga agcgaccagg 351 agatataata atctcaacac ccgtatccaa ggtgcggagg aggctgaact 401 tcgacagccc atacacgaac cgtgttgttg cccccactgt ccgcgtcacc 451 agaagcaaaa tatgggccaa caggcccatg tatcggaagc cgaagctgta 501 cagaatgtat cgaagcccag atgtccctaa gggctgtgaa ggcccatgta 551 aggttcagtc gtatgaacag agggatgatg ttaagcacat tggtatggtc 601 cgatgtgtca gtgatgttac tcgtgggtca ggcattaccc atagagtcgg 651 gaagaggttt tgtgtgaagt ccatatatat attgggcaag atctggatgg 701 atgagaatat caagaagcaa aatcatacga accatgttat gttcttcctc 751 gttcgagaca gaaggcctta tggtccgagc ccgcaagatt ttggacaagt 801 gttcaacatg tttgataatg aacctactac tgcaactgtg aagaatgatc 851 tgagggaccg gtatcaggtg ttacgtaaat tccatgcgac tgttgttggt 901 ggaccctccg ggatgaagga acaagcgctg gttaagaggt tttttaggat 951 caataatcat gtagtgtata atcatcagga acaggccaag tatgagaatc 1001 atactgagaa tgcgttgtta ttgtatatgg catgtacaca tgcctcaaat 1051 cctgtgtacg ctacgttgaa aatacgcatc tatttctatg atgcagtgac 1101 aaattaataa aggttgaatt ttattgcatg ttgctccgta acttggagtg 1151 tgtttagtaa tacagcgtac agaacatgat caacagctct aattacagtg 1201 ttaatggaaa taacgcctat catatctaaa tacttgagca cttgagatct 1251 aaatactctt aagaaaagac cagtctgagg ccgtaaggtc gtccagacct 1301 tgaagttgag aaaacacttg tgaatcgcca atgccttccg gaggttgtgg 1351 ttgaaacgta tctggagtgt gatgatgtcg tggttcatgt tccctggcct 1401 cttgtcgtgg ttggtgattt cgaaatagag gggatttgtt atttcccagg 1451 taaaaacgcc attctttgct tgaggcgcag tgatgagttc ccctgtgcga 1501 gaatccatgg ttgatgcagt cgatatggag atagaacgag cagccacatt 1551 cgaggtctac gcgcctacgt ctgagggccc tgttcttcgc tgtgcggtgt 1601 tggactttga tgggtacttg agaacaatgg ctcgtggagg gtgacgaagg 1651 tggcattctt taaagcccag gctttaaggg actgattctt atcctctccc 1701 agaaactctt tatatgatga tgttggtcct ggattgcaga ggaagatagt 1751 gggaatgccg cctttaattt gaattggctt cccgtacttt gtattgcttt 1801 gccagtccct ttgggccccc atgaattctt tgaagtgctt tagataatgc 1851 gggtctacgt cgtcaatgac gttgtaccat gcgtcgtttg aatatacctt 1901 tggagacaga tccaggtgtc cacatagata attatggggt cccagtgaac 1951 gagcccacat ggtttttccg gttcggctat caccttcgag aacaatactg 2001 atcggtctcc atggccgcgc agcgggactg cagatattgt ttgataccca 2051 gacctctatg tcttcgggga cgtgtgtaaa tgatgatgat aagaacggac 2101 taacgtaagt ttgtggcgga gcctggaaga ttctatctgc gttagcagat 2151 atgttatgga actgtaaaaa aaaggacttg ggatcttttt ctttaataat 2201 ttgaagagct tcggatttag aagaagcatt caacgcgtct gcatatacct 2251 gagctaaatg ctggccctcc ccccttgcac ttctggcatc gacctggaaa 2301 attccatcgt caagaaattc ccctcccttt tcaatgtaag ctttgacatc 2351 ggacgatgat ttagctccct gaatgttcgg atggaaatgt gatgatctag 2401 acggggaaat gagatcaaag aatctctggt ttgtacattg gaacttgcct 2451 tcgaattgga tgagaacatg gagatgaggc accccatcct gatgtagttc 2501 gctgcaaacc ctaatgaatt tgatattcgt cgggtaagaa agggctttta 2551 attgggaaag ggcctcttcc ttggttaatg aacatcgggg ataggtgatg 2601 aaataatttt tggcatttat ttgaaaacga ccggctctgg gcatatttgc 2651 tgtcgtattg gatcggtgga cactcaaaac tccaggggaa tggtggaacg 2701 gtgggcaata tatatgatgt cccccaatgg catatgtgta aataggtgaa 2751 cctccattca aaatttgaat tgcgagtatt ggcggccatc cgattaatat 2801 t