Sequence of DPV Tomato leaf curl Sudan virus

Tomato leaf curl Sudan virus isolate ToLCSDV-Ye:DI-1, complete genome.

ACC No: JF919723

Dated: 2012-12-12 | Length: 1237 | CRC: -2136223959

                
ID   JF919723; SV 1; circular; genomic DNA; STD; VRL; 1237 BP.
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AC   JF919723;
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DT   01-JUN-2012 (Rel. 113, Created)
DT   12-DEC-2012 (Rel. 115, Last updated, Version 2)
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DE   Tomato leaf curl Sudan virus isolate ToLCSDV-Ye:DI-1, complete genome.
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KW   .
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OS   Tomato leaf curl Sudan virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN   [1]
RP   1-1237
RX   DOI; 10.1016/j.virusres.2012.07.014.
RX   PUBMED; 22841489.
RA   Idris A.M., Abdullah N.M., Brown J.K.;
RT   "Leaf curl diseases of two solanaceous species in Southwest Arabia are
RT   caused by a monopartite begomovirus evolutionarily most closely related to
RT   a species from the Nile Basin and unique suite of betasatellites";
RL   Virus Res. 169(1):296-300(2012).
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RN   [2]
RP   1-1237
RA   Idris A.M., Brown J.K.;
RT   ;
RL   Submitted (06-MAY-2011) to the INSDC.
RL   Plant Sciences, University of Arizona, Tucson, AZ 85721, USA
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1237
FT                   /organism="Tomato leaf curl Sudan virus"
FT                   /host="tomato"
FT                   /isolate="ToLCSDV-Ye:DI-1"
FT                   /mol_type="genomic DNA"
FT                   /collection_date="2005"
FT                   /note="defective interfering virus"
FT                   /db_xref="taxon:270146"
FT   CDS             complement(618. .920)
FT                   /codon_start=1
FT                   /product="C4"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:I3QBA6"
FT                   /protein_id="AFI56581.1"
FT                   /translation="MGSHISMCLYSSKANSSAKISDSSTWYPQAGQHISIQTFRELNQV
FT                   PTSSPTSIRTETLSTGESFRSMEGLQEGVNNLQTMLTPQQLTQAVSQRLLEYLGN"
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SQ   Sequence 1237 BP; 332 A; 257 C; 255 G; 393 T; 0 other;

jf919723 Length: 1237  12-DEC-2012  Type: N  Check: 4522  ..

       1  accggatggc cgcgcccctg cttttatgtg gtccccatca cgtgggttcc
      51  acacatgtcg ctatcatcca atgaaattca agcctgaaac gttaattaat
     101  tgtccttttg tctttatata cttggtcccc aagtagtttc tcttgcaata
     151  tgtgggaccc tctgattaac gagtttcctg aatcagttca cggatttcgt
     201  tgtatgctag ccataaaata tttgcaggcc gttgagcaaa catacgagcc
     251  caatactctg ggccacgatt taattaggga tcttatttct gttataaggg
     301  cccgtgacac catgcattat tactgtaaac ttttggactc aggtccagat
     351  gtccacacaa ataattgtgt ggtcctagag acctggccca cattgttttg
     401  ccggttctac tatcaccctc gatgacaata ctattaggtc tccatggccg
     451  cgcagcggaa ggcatgacgt tctccgacac ccaaacctca agttcctctg
     501  gaacttgatt aaaagaagaa gatagaaaag gagaaatata cggagccgga
     551  ggctcctgaa aaatcctatc taaattacta tttaaattat gaaattgtaa
     601  aatataatct ctgggagcta attccctaag tactctaaga gcctctgact
     651  tactgcctga gttaattgct gcggcgtaag catcgtttgc agattgttga
     701  ccccctcttg cagaccttcc atcgatctga aactctcccc agtcgagagt
     751  gtctccgtcc ttatcgatgt aggacttgac gtcggaactt gatttagctc
     801  cctgaatgtt tggatggaaa tgtgctgccc tgcttgggga taccaggtcg
     851  aagaatcgct gattttggca cttgaatttg ccttcgaact gtataagcac
     901  atggagatgt ggctccccat tctcgtgaag ttctctgcaa actttgatat
     951  attttttatt tgttggggta tttatgtttt ttaattggga aagtgcctct
    1001  tcttttgtta aggagcattg aggatatgta aggaaataat ttttgcaatt
    1051  tatttgaaaa cgcttgggag gagccatatg gtcaatgagt accgattgac
    1101  caagatttca tttatccctt gtatatcggt actcaatata tagtgagtac
    1151  caaatggcat attggtaatt atgtaaaggt acatttattt tcaaaattta
    1201  aaattgaaat tcataaagcg gccatccgta taatatt