Sequence of DPV Tomato leaf curl Sudan virus
Tomato leaf curl Sudan virus isolate Tih:tom3:05, complete genome.
ACC No: JF919728
Dated: 2012-12-12 | Length: 2780 | CRC: 1944479716
ID JF919728; SV 1; linear; genomic DNA; STD; VRL; 2780 BP.
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AC JF919728;
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DT 01-JUN-2012 (Rel. 113, Created)
DT 12-DEC-2012 (Rel. 115, Last updated, Version 2)
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DE Tomato leaf curl Sudan virus isolate Tih:tom3:05, complete genome.
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KW .
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OS Tomato leaf curl Sudan virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2780
RX DOI; 10.1016/j.virusres.2012.07.014.
RX PUBMED; 22841489.
RA Idris A.M., Abdullah N.M., Brown J.K.;
RT "Leaf curl diseases of two solanaceous species in Southwest Arabia are
RT caused by a monopartite begomovirus evolutionarily most closely related to
RT a species from the Nile Basin and unique suite of betasatellites";
RL Virus Res. 169(1):296-300(2012).
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RN [2]
RP 1-2780
RA Idris A.M., Brown J.K.;
RT ;
RL Submitted (06-MAY-2011) to the INSDC.
RL Plant Sciences, University of Arizona, Tucson, AZ 85721, USA
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FH Key Location/Qualifiers
FH
FT source 1. .2780
FT /organism="Tomato leaf curl Sudan virus"
FT /host="tomato"
FT /isolate="Tih:tom3:05"
FT /mol_type="genomic DNA"
FT /country="Yemen"
FT /collection_date="2005"
FT /db_xref="taxon:270146"
FT gene 150. .500
FT /gene="V2"
FT CDS 150. .500
FT /codon_start=1
FT /gene="V2"
FT /product="precoat protein"
FT /db_xref="GOA:A9P494"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:A9P494"
FT /protein_id="AFI56586.1"
FT /translation="MWDPLINEFPESVHGFRCMLAIKYLQAVEQTYEPNTLGHDLIRDL
FT ISVIRARDYVEASRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQASIMDVQAHV
FT PKAQNIQNVSNP"
FT gene 310. .1083
FT /gene="V1"
FT CDS 310. .1083
FT /codon_start=1
FT /gene="V1"
FT /product="coat protein"
FT /db_xref="GOA:A9P495"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:A9P495"
FT /protein_id="AFI56587.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAAPIVQGTNKRRSW
FT TYRPMYRKPKIYRMYRTPDVPRGCEGPCKVQSFDKRHDLKHTGEVLCVSDVTRGNGLTH
FT RVGKRFCIKSIYIVGKVWMDENIKVKNHTNTCMFWLVRDRRPVTTPYGFGELFNMYDNE
FT PSTATIKNDLRDRCQVLKRFTASLSGGQYASKEQCVIRRFYKVYNHIVYNHQEQGKYEN
FT HTENALLLYMACTHASNPVYATLKIRVYFYDSISN"
FT gene complement(1080. .1484)
FT /gene="C3"
FT CDS complement(1080. .1484)
FT /codon_start=1
FT /gene="C3"
FT /product="replication enhancer protein"
FT /note="REp"
FT /db_xref="GOA:A9P496"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:A9P496"
FT /protein_id="AFI56590.1"
FT /translation="MDSRTGEPITAHQAQSGVFIWEIKNPLYFKITDHSQRPFLMNHDI
FT ISMQIRFNHNIRKELGIHKCFLNFQIWTNLQPQTGRFLRVVRYQVLKYLDNLGVISINN
FT VIRAVHHVLYNVIAKTIDVTENHDIKYKIY"
FT gene complement(1225. .1632)
FT /gene="C2"
FT CDS complement(1225. .1632)
FT /codon_start=1
FT /gene="C2"
FT /product="transcriptional activator protein"
FT /note="TrAP"
FT /db_xref="GOA:A9P497"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:A9P497"
FT /protein_id="AFI56589.1"
FT /translation="MRHSSPSPSRCSQVPIKVQHRTAKTKTVRRKRIDLNCGCSYYLHL
FT NCINHGFTHRGTHHCSSSPEWRFYLGDKKSPVFQDNRPQSEAISNEPRHHFNANKIQSQ
FT HQEGTGDSQMFSELPNLDELTASDWSFLKSS"
FT gene complement(1541. .2620)
FT /gene="C1"
FT CDS complement(1541. .2620)
FT /codon_start=1
FT /gene="C1"
FT /product="replication associated protein"
FT /note="Rep"
FT /db_xref="GOA:A9P498"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:A9P498"
FT /protein_id="AFI56588.1"
FT /translation="MAPPKRFQINCKNYFLTYPQCSLTKEEALSQLKNINTPTNKKYIK
FT VCRELHENGEPHLHVLIQFEGKFKCQNQRFFDLVSPSRAAHFHPNIQGAKSSSDVKSYI
FT DKDGDTLDWGEFQIDGRSARGGQQSANDAYAAAINSGSKSEALRVLRELAPRDYILQFH
FT NLNSNLDRIFQEPPAPYISPFLSSSFNQVPEELEVWVSENVMPSAARPWRPNSIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNNAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEERNISLKNWALKNATFVTLSEPL
FT FSSANQGPTPNGEDEDSQT"
FT gene complement(2161. .2463)
FT /gene="C4"
FT CDS complement(2161. .2463)
FT /codon_start=1
FT /gene="C4"
FT /product="C4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:I3QBA6"
FT /protein_id="AFI56591.1"
FT /translation="MGSHISMCLYSSKANSSAKISDSSTWYPQAGQHISIQTFRELNQV
FT PTSSPTSIRTETLSTGESFRSMEGLQEGVNNLQTMLTPQQLTQAVSQRLLEYLGN"
XX
SQ Sequence 2780 BP; 739 A; 552 C; 604 G; 885 T; 0 other;
jf919728 Length: 2780 12-DEC-2012 Type: N Check: 6583 ..
1 accggatggc cgcgcccctg cttttatgtg gtccccatca cgtgggttcc
51 acacatgtcg ctatcatcca atgaaattca agcctgaaac gttaattaat
101 tgtccttttg tctttatata cttggtcccc aagtagtttc tcttgcaata
151 tgtgggaccc tctgattaac gagtttcctg aatcagttca cggatttcgt
201 tgtatgctag ccataaaata tttgcaggcc gttgagcaaa catacgagcc
251 caatactctg ggccacgatt taattaggga tcttatttct gttataaggg
301 cccgtgacta tgtcgaagcg tcccggcgat ataatcattt ccacgcccgt
351 ctcgaaggtt cgccgaaggc tgaacttcga cagcccatac agcagccgtg
401 ctgctgcccc cattgtccaa ggcacaaaca agcgtcgatc atggacgtac
451 aggcccatgt accgaaagcc caaaatatac agaatgtatc gaacccctga
501 tgttccccgt ggatgtgaag gcccttgtaa ggtccaatcg tttgacaagc
551 gccatgattt gaagcatacg ggtgaggtat tgtgtgtttc agatgtaaca
601 cgtggtaatg gccttactca tcgtgttggg aaacgttttt gtatcaagtc
651 tatttacatt gtgggcaaag tgtggatgga tgagaacatt aaggttaaga
701 atcatactaa cacttgtatg ttctggcttg ttcgggatcg tcgtccagtt
751 accactccat atggatttgg ggagttgttt aatatgtatg ataatgagcc
801 atctacagcg actattaaga atgatttgcg ggatcgttgt caggttctca
851 agaggtttac tgctagtctg agtggtggtc aatatgcctc taaagagcaa
901 tgtgtgatta ggcgatttta taaggtttat aatcatattg tgtataacca
951 tcaagagcaa gggaagtatg agaatcatac tgagaacgct ctattattgt
1001 atatggcatg tactcatgct tctaatccag tgtatgctac acttaaaata
1051 agggtgtatt tctatgattc aatatcaaat taataaattt tatattttat
1101 atcatgattt tctgttacat ctattgtctt tgcaattaca ttatacaata
1151 catgatgaac tgctctaatt acattgttaa tggaaattac acccaaatta
1201 tctaaatatt taagaacctg atacctaact actcttaaga aacgaccagt
1251 ctgaggctgt aagttcgtcc agatttggaa gttcagaaaa catttgtgaa
1301 tccccagttc cttcctgatg ttgtgattga atcttatttg cattgaaatg
1351 atgtcgtggt tcattagaaa tggcctctga ctgtggtctg ttatcttgaa
1401 atacagggga ttttttatct cccagataaa aacgccactc tgggcttgat
1451 gagcagtgat gggttccccg gtgcgtgaat ccatggttga tgcagttgag
1501 gtggagatag tacgagcacc cgcaatttag gtcaatgcgc ttacgtctga
1551 ctgtcttcgt cttcgccgtt cggtgttgga ccttgattgg cacttgagaa
1601 caacggctcg gagagggtga cgaatgtcgc attctttaga gcccaatttt
1651 tcagagatat gtttctttct tcatccagat attctctata tgaggaggta
1701 ggtcctggat tgcataggaa gatagtggga attcctcctt taatttgaat
1751 gggtttcccg tattttgtgt tgctttgcca gtccctctgg gcccccatga
1801 attccttaaa gtgctttaaa taatgcgggt ctacgtcatc aatgacgttg
1851 taccatgcat tattactgta aacttttgga ctcaggtcca gatgtccaca
1901 caaataattg tgtggtccta gagacctggc ccacattgtt ttgccggttc
1951 tactatcacc ctcgatgaca atactattag gtctccatgg ccgcgcagcg
2001 gaaggcatga cgttctccga cacccaaacc tcaagttcct ctggaacttg
2051 attaaaagaa gaagatagaa aaggagaaat atacggagcc ggaggctcct
2101 gaaaaatcct atctaaatta ctatttaaat tatgaaattg taaaatataa
2151 tctctgggag ctaattccct aagtactcta agagcctctg acttactgcc
2201 tgagttaatt gctgcggcgt aagcatcgtt tgcagattgt tgaccccctc
2251 ttgcagacct tccatcgatc tgaaactctc cccagtcgag agtgtctccg
2301 tccttatcga tgtaggactt gacgtcggaa cttgatttag ctccctgaat
2351 gtttggatgg aaatgtgctg ccctgcttgg ggataccagg tcgaagaatc
2401 gctgattttg gcacttgaat ttgccttcga actgtataag cacatggaga
2451 tgtggctccc cattctcgtg aagttctctg caaactttga tatatttttt
2501 atttgttggg gtatttatgt tttttaattg ggaaagtgcc tcttcttttg
2551 ttaaggagca ttgaggatat gtaaggaaat aatttttgca atttatttga
2601 aaacgcttgg gaggagccat atggtcaatg agtaccgatt gaccaagatt
2651 tcatttatcc cttgtatatc ggtactcaat atatagtgag taccaaatgg
2701 catattggta attatgtaaa ggtacattta ttttcaaaat ttaaaattga
2751 aattcataaa gcggccatcc gtataatatt