Sequence of DPV African cassava mosaic virus
African cassava mosaic virus isolate S5J1 segment DNA-A, complete sequence.
ACC No: JN053426
Dated: 2011-09-14 | Length: 2781 | CRC: -58299151
ID JN053426; SV 1; circular; genomic DNA; STD; VRL; 2781 BP.
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AC JN053426;
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DT 14-SEP-2011 (Rel. 110, Created)
DT 14-SEP-2011 (Rel. 110, Last updated, Version 1)
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DE African cassava mosaic virus isolate S5J1 segment DNA-A, complete sequence.
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KW .
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OS African cassava mosaic virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RC Publication Status: Online-Only
RP 1-2781
RX PUBMED; 21812981.
RA Ramkat R.C., Calari A., Maghuly F., Laimer M.;
RT "Biotechnological approaches to determine the impact of viruses in the
RT energy crop plant Jatropha curcas";
RL Virol J 8:386-386(2011).
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RN [2]
RP 1-2781
RA Ramkat R.C., Calari A., Maghuly F., Laimer M.;
RT ;
RL Submitted (03-JUN-2011) to the INSDC.
RL Plant Biotechnology, Institute of Applied Microbiology, Muthgasse, Wien
RL A1190, Austria
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FH Key Location/Qualifiers
FH
FT source 1. .2781
FT /organism="African cassava mosaic virus"
FT /segment="DNA-A"
FT /host="Jatropha curcas"
FT /isolate="S5J1"
FT /mol_type="genomic DNA"
FT /country="Kenya"
FT /collected_by="Rose C. Ramkat"
FT /collection_date="28-Aug-2009"
FT /db_xref="taxon:10817"
FT gene 134. .475
FT /gene="AV2"
FT CDS 134. .475
FT /codon_start=1
FT /gene="AV2"
FT /product="AV2"
FT /protein_id="AEO17936.1"
FT /translation="MWDPLVNEFPDSVHGLRCMLAIKYLQALEDTYEPSTLGHDLVRDL
FT VSVIRARNYVEATRRYHHFHSRLQGSSKTELRQPIQEPCYCPHCPRHKSKTGLGEQAHV
FT QKAHDVQDV"
FT gene complement(272. .637)
FT /gene="AL5"
FT CDS complement(272. .637)
FT /codon_start=1
FT /gene="AL5"
FT /product="AL5"
FT /protein_id="AEO17935.1"
FT /translation="MDLIQNLFPTLCVSPAPRVTSLIHLQITRWFTSSLCSNDWTLHGP
FT SQPLGMSGLLYILYIVGFLYMGLFTQARFRFVTWTVGAVARFLYGLSKFSLRRTLEPGV
FT EMMISPGRFDIITSPDN"
FT gene 294. .1070
FT /gene="AV1"
FT CDS 294. .1070
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="AEO17937.1"
FT /translation="MSKRPGDIIISTPGSKVRRRLNFDSPYRNRATAPTVHVTNRKRAW
FT VNRPMYRKPTMYRMYRSPDIPRGCEGPCKVQSFEQRDDVNHLVICKWISDVTRGAGLTH
FT RVGKRFCIKSIYILGKIWLDETIKKQNHTNNVIFYLLRDRRPYGISPKDFGQKLNMFDN
FT EPSTATIKNDLRDRFQVLRKFHATVVGGPYGMKEQALVKRFYRLNHHGTYNHQEAGKYE
FT NHTENALLLYMACTHASNPVYATLKIRIYFYDSIGN"
FT gene complement(1067. .1471)
FT /gene="AC3"
FT CDS complement(1067. .1471)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer protein"
FT /protein_id="AEO17938.1"
FT /translation="MDLRTGELITAPQAMNGVYTWEINNPLYFTITRHQQRPFLLNQDI
FT ITVQVRFNHNLRKALGIHKCFLNFEIWTTLQPQTGLFLRVFRYQVIKYLDNIGVISINN
FT VIRAADHVLFNVIANTIECKLTHEIKFNVY"
FT gene complement(1212. .1619)
FT /gene="AC2"
FT CDS complement(1212. .1619)
FT /codon_start=1
FT /gene="AC2"
FT /product="transcription activator protein"
FT /protein_id="AEO17940.1"
FT /translation="MQSSSPSQNHSTQVPIKVTHRQVKKRAIRRRRVDLVCGCSYYLHI
FT NCFNHGFTHRGTHHCSSSNEWRVYLGNKQSPVFHNHQAPTTTIPAEPGHHNSPGSIQSQ
FT PEEGAGDSQMFSQLRDLDDLTASDWSFLKGL"
FT gene complement(1528. .2604)
FT /gene="AC1"
FT CDS complement(1528. .2604)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication-associated protein"
FT /protein_id="AEO17939.1"
FT /translation="MRTPRFRIQAKNVFLTYPKCSIPKEHLLSFIQTLSLPSNPKFIKI
FT CRELHQNGEPHLHALIQFEGKITITNNRLFDCVHPSCSTSFHPNIQGAKSSSDVKSYLD
FT KDGDTVEWGQFQIDGRSARGGQQSANDAYAKALNSGSKSEALNVIRELVPKDFVLQFHN
FT LNSNLDRILQEPPDPYVCPFPCSSFDRVPVEIEEWVSDNVRDSAAQPWRRNGIVTADDS
FT RTGKTIWARSLGPHNYLCGHLDLSPKVFNIAAWYNVIDDFDPHYLKHFKEFMGSQRDWQ
FT SNTKYGKPVQIKGGIPTIFLCNPGPTSSYKEFLDEEKQEALKAWALKNAIFITLTEPLY
FT SGSNQSHSQTSQEASHPA"
FT gene complement(2148. .2570)
FT /gene="AC4"
FT CDS complement(2148. .2570)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4"
FT /protein_id="AEO17941.1"
FT /translation="MSFSHTQSVLYPKNTYCHSFKHSLSHQTLSSLKSVESCIRMENLT
FT CMPSSNSRVKSRLRTIVSSIVYTQAVAPVSTPTFKVPNQAQMSSPIWIRTATPSNGDNF
FT KSMDDLLEAVNNQRMMLTRKRLTAAVSQKLLMSLGN"
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SQ Sequence 2781 BP; 744 A; 560 C; 679 G; 798 T; 0 other;
jn053426 Length: 2781 14-SEP-2011 Type: N Check: 6202 ..
1 accggttggc cccgccccct ttaaagtggt ccccgcgcac tacgtatgtc
51 ggccaatcat gatgtagctt taaaggttat gtattagtgg tgggccacta
101 tatacttgca ggcgaagttg ttgctagtgc gcaatgtggg atccactggt
151 gaatgagttt ccagactcgg tgcatgggct taggtgtatg cttgcaatta
201 aatatttgca ggccttagag gatacatacg agcccagtac tttgggccac
251 gatctggtga gggatctagt ctcagttatc agggctcgta attatgtcga
301 agcgaccagg agatatcatc atttccactc caggctccaa ggttcgtcga
351 agactgaact tcgacagccc atacaggaac cgtgctactg cccccactgt
401 ccacgtcaca aatcgaaaac gggcctgggt gaacaggccc atgtacagaa
451 agcccacgat gtacaggatg tatagaagcc cagacatacc taggggctgt
501 gaaggcccat gtaaggtcca gtcgtttgaa cagagggatg atgtgaacca
551 ccttgttatc tgtaagtgga ttagtgatgt gactcgtggc gctgggctga
601 cacacagggt cggaaagagg ttttgtatca agtccattta cattcttggt
651 aagatctggc tggatgaaac tattaagaag caaaatcaca ctaataatgt
701 gattttttac ctgcttaggg atagaaggcc ttatggcatt tcgcccaagg
751 actttgggca gaaattaaac atgtttgata atgagcccag tactgcaaca
801 attaagaacg atttgaggga taggtttcag gtgttgagga aatttcatgc
851 cactgttgtt ggtggtccat atggcatgaa ggagcaggcg ttggtgaaga
901 ggttttacag gttgaatcat cacgggactt ataatcatca ggaggcaggg
951 aagtatgaga atcacacgga gaatgctttg cttctgtaca tggcatgtac
1001 tcatgcctcc aatcctgtat atgcgacgtt gaaaatacgt atatacttct
1051 atgacagtat tggcaattaa taaacattga attttatttc atgagtcaac
1101 ttgcactcaa tagtgttggc aattacattg aacaaaacat gatcagcagc
1151 tctaattaca ttgttaattg agataacacc tatattatcc aagtatttaa
1201 ttacttggta tctaaagacc cttaagaaaa gaccagtctg aggctgtaag
1251 gtcgtccaga tctcgaagtt gagaaaacat ttgtgaatcc ccagcgcctt
1301 cctcaggttg tgattgaatc gaacctggac tgttatgatg tcctggttca
1351 gcaggaatgg tcgttgttgg tgcctggtga ttgtgaaata caggggattg
1401 tttatttccc aggtatacac gccattcatt gcttgaggag cagtgatgag
1451 ttcccctgtg cgtaaatcca tgattgaagc agttgatatg gaggtaatat
1501 gaacatccac agacaagatc cactctccta cgccggatgg ctcgcttctt
1551 gacttgtctg tgagtgactt tgattggaac ctgagtagag tggttctgtg
1601 agggtgatga agattgcatt ctttaatgcc caggccttta gcgcttcttg
1651 cttttcctcg tctaggaact ctttatagga cgaggtaggt cctggattgc
1701 agaggaagat agtgggaatt ccacctttaa tttgaacggg tttcccgtat
1751 ttcgtgttgg actgccagtc cctctgggac cccatgaatt ccttaaagtg
1801 ctttagatag tgcggatcga agtcatcaat gacgttgtac caggcagcaa
1851 tattgaagac ctttggacta aggtccaggt gtccacacag gtaattatgt
1901 gggcctaaag atctggccca tatcgtcttc cctgttctgc tatcgtctgc
1951 tgtgacaatc ccattacgtc tccatggctg cgctgcggaa tccctaacat
2001 tatcagagac ccattcttca atttcaacag gaactcggtc aaaggaagaa
2051 catgggaatg gacaaacata aggatctggt ggctcctgca aaatcctatc
2101 taaattacta tttagattat gaaactgaag tacaaagtcc tttgggacta
2151 attccctaat gacattaaga gcttctgact tactgccgct gttaagcgct
2201 ttcgcgtaag catcattcgc tgattgttga ccgcctctag cagatcgtcc
2251 atcgatttga aattgtcccc attcgacggt gtcgccgtcc ttatccagat
2301 aggacttgac atctgagctt gatttggcac cttgaatgtt ggggtggaaa
2351 ctggtgctac agcttgggtg tacacaatcg aagagacgat tgttcgtaat
2401 cgtgatttta ccctcgaatt ggatgagggc atgcaagtga ggttctccat
2451 tctgatgcag ctctctacag attttaatga acttagggtt tgatgggaga
2501 gagagtgttt gaatgaatga cagtaggtgt tctttgggta tagaacactt
2551 tgggtatgtg agaaagacat tcttggcttg aattcgaaaa cgaggagttc
2601 tcatgttgac caagtcaatt ggagacactc tcaactggag acacacttga
2651 gcatctcctc ctgttaattg gagacattat atagttgtct ctaaatggca
2701 ttcttgtaat aagtggaact ttaatttgaa ttaaaaggct caaaaggctc
2751 agaacaccca aggggccaac cgtataatat t