Sequence of DPV Cleome leaf crumple virus

Cleome leaf crumple virus isolate BR:SE-Jpt1:09 segment DNA-A, complete sequence.

ACC No: JN103430

Dated: 2011-12-07 | Length: 2726 | CRC: 1103051045

                
ID   JN103430; SV 1; circular; genomic DNA; STD; VRL; 2726 BP.
XX
AC   JN103430;
XX
DT   26-OCT-2011 (Rel. 110, Created)
DT   07-DEC-2011 (Rel. 111, Last updated, Version 2)
XX
DE   Cleome leaf crumple virus isolate BR:SE-Jpt1:09 segment DNA-A, complete
DE   sequence.
XX
KW   .
XX
OS   Cleome leaf crumple virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC   unclassified Begomovirus.
XX
RN   [1]
RP   1-2726
RX   PUBMED; 22006043.
RA   da Silva S.J., Castillo-Urquiza G.P., Hora Junior B.T., Assuncao I.P.,
RA   Lima G.S., Pio-Ribeiro G., Mizubuti E.S., Zerbini F.M.;
RT   "High genetic variability and recombination in a begomovirus population
RT   infecting the ubiquitous weed Cleome affinis in northeastern Brazil";
RL   Arch. Virol. 156(12):2205-2213(2011).
XX
RN   [2]
RP   1-2726
RA   da Silva S.J.C., Castillo-Urquiza G.P., Hora-Junior B.T., Assuncao I.P.,
RA   Lima G.S.A., Pio-Ribeiro G., Mizubuti E.S.G., Zerbini F.M.;
RT   ;
RL   Submitted (09-JUN-2011) to the INSDC.
RL   Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n,
RL   Vicosa, Minas Gerais 36570-000, Brazil
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2726
FT                   /organism="Cleome leaf crumple virus"
FT                   /segment="DNA-A"
FT                   /host="Cleome affinis"
FT                   /isolate="BR:SE-Jpt1:09"
FT                   /mol_type="genomic DNA"
FT                   /country="Brazil:Japoata, Sergipe"
FT                   /collection_date="17-Nov-2009"
FT                   /db_xref="taxon:666144"
FT   CDS             295. .1050
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /protein_id="AER09300.1"
FT                   /translation="MPKRDAPWRTVSGTTKVSRNANYSPRGGTGSRPSRAAAWINRPMY
FT                   RKPRIYRMYRSPDVPRGCEGPCKVQSYEQRHDISHTGKVICVSDITRGNGITHRVGKRF
FT                   CVKSMYILGKVWMDENIKLKNHTNTVMLWLVRDRRPYGTAMDFGQVFNLFDNEPSTATV
FT                   KNDLRDRFQVLNRFHVKVTGGQYASNEQALVRRFWRVNTHVTYNHQEAAKYENHTENAL
FT                   LLYMACTHASNPVYATLKIRIYFYDSILN"
FT   CDS             complement(1047. .1445)
FT                   /codon_start=1
FT                   /product="replication-enhancer protein"
FT                   /note="REN"
FT                   /protein_id="AER09301.1"
FT                   /translation="MDSRTGEPITAPQAENGVYTWEITNPLYFKIYDAVEILSRTTRVY
FT                   HVQIRFNHNLRKALDLHKAFLNFQVWTVSVTASGQTYLNRFKHLVLMYLNNVGVISLNN
FT                   VIRAVTFATDRPYVRRVRENHSIQFKLY"
FT   CDS             complement(1192. .1581)
FT                   /codon_start=1
FT                   /product="transactivating protein"
FT                   /note="TRAP"
FT                   /protein_id="AER09302.1"
FT                   /translation="MRGSSSSNLPSIKVQHRVAKRRAIRRRRIDLNCGCTIYIHLNCAN
FT                   NGFTHRGTHHCASSGEWRVYMGDNKSPVFQDIRRGGDPVQNDEGLPRTNPVQPQPEESV
FT                   GSPQGVPQLPSLDSIGDSFWADLFK"
FT   CDS             complement(1502. .2581)
FT                   /codon_start=1
FT                   /product="replication-associated protein"
FT                   /note="REP"
FT                   /protein_id="AER09299.1"
FT                   /translation="MPSAPKRFLINARNYFLTYPKCSLTKEEALSQLQALATPTNKKFI
FT                   KVARELHDNGEPHLHVLLQFEGKFKCQNQRFFDLVSPSRSAHFHPNVQGAKSSSDVKSY
FT                   VDKDGDTLEWGTFQIDGRSARGGCQSANDTYAKVLNAESAAQALQILREEQPRDFVLHL
FT                   DKVQAHVQKIFAKAPEPWVPPFPLSSFTNVPDEMQSWADEYFALSAEARPNRPISLIVE
FT                   GDSRTGKTMWARALGPHNYLSGHLDFNSRVYSNEVAYNVIDDVAPHYLKLKHWKELVGA
FT                   QRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKDFLEKEENSSLRSWTLHNARFVFL
FT                   ESPLYQGATQSGETESHSP"
FT   CDS             complement(2128. .2421)
FT                   /codon_start=1
FT                   /product="AC4 protein"
FT                   /note="AC4"
FT                   /protein_id="AER09303.1"
FT                   /translation="MGSLISTCFSNSRGSSNARIKDSSTWYPRPGQHISIRTYRELSRA
FT                   PTSSPTSTKTGILWNGEHSRSTGEVLEAVANRLTTHTPKSLTPSLQRKHCRF"
XX
SQ   Sequence 2726 BP; 649 A; 632 C; 743 G; 702 T; 0 other;

jn103430 Length: 2726  07-DEC-2011  Type: N  Check: 7719  ..

       1  accggatggc cgcttgatct gttttatgtt cggcccgcgc aagcggaaga
      51  gttgggccga cgatggcaaa aaactcggcc catgatgaga ggagatgata
     101  gggggaccat gtcccaaaaa aggaacgtat gatgggacca cataaagaca
     151  gtgattacgc ccaataagga ttgggcaaca aagccaagat attgaaatat
     201  acttggccga taagttgata aagtgtataa atgggaccat cacccttcgt
     251  ggtctagtca gccccgaata ggactcgacg ttctgtggtg cagaatgcct
     301  aagcgtgatg ccccatggcg aacggtttca gggaccacga aggttagccg
     351  caacgccaac tactcccctc gtggaggcac gggctcaaga ccaagcaggg
     401  ccgctgcttg gattaatcgg cccatgtata ggaagcccag aatatatcgg
     451  atgtataggt cacccgatgt gcccagaggg tgtgaaggcc cgtgcaaggt
     501  gcagtcatac gagcagcgcc acgatatatc ccacaccggc aaggtgatat
     551  gcgtgtctga cattacccgc ggtaatggta ttactcaccg cgttggtaag
     601  cgattttgcg tcaagtctat gtacatccta ggcaaggtct ggatggacga
     651  gaacatcaag ttgaagaacc acacgaacac ggtgatgttg tggttagtta
     701  gggacaggag accttacggg acggccatgg atttcggaca ggtttttaac
     751  ctgtttgaca acgagccaag caccgctacg gtgaagaacg atctccgtga
     801  tcgttttcag gtgctgaaca ggttccacgt gaaggtcact ggtggacagt
     851  acgcgagcaa cgagcaggcg ctggttaggc gcttttggag ggtgaacacc
     901  cacgtgacgt ataaccacca ggaggcggcg aagtacgaga accatacgga
     951  gaacgccctg ttattgtata tggcatgtac tcatgcctct aaccctgtat
    1001  acgcgacgct caagattcga atctatttct acgattcgat attgaattaa
    1051  taaagtttga attgtattga atggttctcg cgtacacgtc ttacatacgg
    1101  tctgtccgtt gcgaaggtga cagctcgaat tacattgtta aggctaataa
    1151  cgcccacgtt atttagatac atgaggacca aatgtttaaa cctatttaaa
    1201  taggtctgcc cagaagctgt caccgatact gtccagactt ggaagttgag
    1251  gaacgccttg tggagatcca acgctttcct caggttgtgg ttgaaccgga
    1301  tttgtacgtg gtagaccctc gtcgttctgg acaggatctc caccgcgtcg
    1351  tatatcttga aatacagggg atttgttatc tcccatgtat acacgccatt
    1401  ctccgcttga ggcgcagtga tgggttcccc tgtgcgtgaa tccattattc
    1451  gcgcagttta ggtggatgta tattgtacat ccacagttta ggtcgatgcg
    1501  tctacggcga atggctctcc gtttcgccac tctgtgttgc accttgatag
    1551  aggggagatt cgaggaagac gaacctcgca ttgtgaaggg tccacgaccg
    1601  gagtgatgag ttctcctctt tctcgaggaa gtctttatag ctggaccctt
    1651  caccaggatt gcaaagcacg attgatggga taccgccttt aatttgaacg
    1701  ggtttcccgt atttgcagtt actttgccag tctcgttggg ccccaacgag
    1751  ttctttccag tgctttagct ttaggtagtg cggggcaacg tcatcgatga
    1801  cgttgtatgc gacttcgttt gagtagaccc tcgagttgaa gtcgaggtgt
    1851  ccactgagat aattgtgggg acctaaagca cgcgcccaca tcgtcttccc
    1901  cgtcctcgaa tctccttcga cgatcagact tatcggtctg tttggccgcg
    1951  cttcggcgga taaggcgaaa tactcatcgg cccacgactg catttcgtcc
    2001  ggaacgttag tgaatgagga caacgggaac ggagggaccc atggttccgg
    2051  agccttagcg aagattttct ggacatgtgc ttgcaccttg tctaaatgga
    2101  ggacgaaatc ccgcggttgc tcttccctta gaatctgcag tgcttgcgct
    2151  gcagactcgg cgttaaggac tttggcgtat gtgtcgttag ccgattggca
    2201  accgcctcta gcacttctcc cgtcgatctg gaatgttccc cattccagag
    2251  tatccccgtc tttgtcgacg taggacttga cgtcggagct cgacttagct
    2301  ccctgtacgt tcggatggaa atgtgctgac cgggacgggg ataccaggtc
    2351  gaagaatctt tgattctggc atttgaactt cccctcgaat tggagaagca
    2401  cgtggagatg aggctcccca ttatcgtgga gctctctggc gaccttgatg
    2451  aacttcttgt tcgtcggcgt tgctagggct tgcaattggg aaagtgcttc
    2501  ctctttggtc agggagcact ttggataagt gaggaaataa tttctggcgt
    2551  ttattaggaa acgctttggc gccgatggca ttttggtaaa taaagggatg
    2601  agacccaata gagaggaccc gatagctctc gtttcaactt ggtgaaatga
    2651  atcggggaat gggtccttat ttatagcata gtccgttagg gtatatttgc
    2701  cacgtgtcgg ccatccgtat aatatt