Sequence of DPV Cleome leaf crumple virus
Cleome leaf crumple virus isolate BR:SE-Jpt1:09 segment DNA-A, complete sequence.
ACC No: JN103430
Dated: 2011-12-07 | Length: 2726 | CRC: 1103051045
ID JN103430; SV 1; circular; genomic DNA; STD; VRL; 2726 BP. XX AC JN103430; XX DT 26-OCT-2011 (Rel. 110, Created) DT 07-DEC-2011 (Rel. 111, Last updated, Version 2) XX DE Cleome leaf crumple virus isolate BR:SE-Jpt1:09 segment DNA-A, complete DE sequence. XX KW . XX OS Cleome leaf crumple virus OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus; OC unclassified Begomovirus. XX RN [1] RP 1-2726 RX PUBMED; 22006043. RA da Silva S.J., Castillo-Urquiza G.P., Hora Junior B.T., Assuncao I.P., RA Lima G.S., Pio-Ribeiro G., Mizubuti E.S., Zerbini F.M.; RT "High genetic variability and recombination in a begomovirus population RT infecting the ubiquitous weed Cleome affinis in northeastern Brazil"; RL Arch. Virol. 156(12):2205-2213(2011). XX RN [2] RP 1-2726 RA da Silva S.J.C., Castillo-Urquiza G.P., Hora-Junior B.T., Assuncao I.P., RA Lima G.S.A., Pio-Ribeiro G., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (09-JUN-2011) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, Minas Gerais 36570-000, Brazil XX FH Key Location/Qualifiers FH FT source 1. .2726 FT /organism="Cleome leaf crumple virus" FT /segment="DNA-A" FT /host="Cleome affinis" FT /isolate="BR:SE-Jpt1:09" FT /mol_type="genomic DNA" FT /country="Brazil:Japoata, Sergipe" FT /collection_date="17-Nov-2009" FT /db_xref="taxon:666144" FT CDS 295. .1050 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /protein_id="AER09300.1" FT /translation="MPKRDAPWRTVSGTTKVSRNANYSPRGGTGSRPSRAAAWINRPMY FT RKPRIYRMYRSPDVPRGCEGPCKVQSYEQRHDISHTGKVICVSDITRGNGITHRVGKRF FT CVKSMYILGKVWMDENIKLKNHTNTVMLWLVRDRRPYGTAMDFGQVFNLFDNEPSTATV FT KNDLRDRFQVLNRFHVKVTGGQYASNEQALVRRFWRVNTHVTYNHQEAAKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSILN" FT CDS complement(1047. .1445) FT /codon_start=1 FT /product="replication-enhancer protein" FT /note="REN" FT /protein_id="AER09301.1" FT /translation="MDSRTGEPITAPQAENGVYTWEITNPLYFKIYDAVEILSRTTRVY FT HVQIRFNHNLRKALDLHKAFLNFQVWTVSVTASGQTYLNRFKHLVLMYLNNVGVISLNN FT VIRAVTFATDRPYVRRVRENHSIQFKLY" FT CDS complement(1192. .1581) FT /codon_start=1 FT /product="transactivating protein" FT /note="TRAP" FT /protein_id="AER09302.1" FT /translation="MRGSSSSNLPSIKVQHRVAKRRAIRRRRIDLNCGCTIYIHLNCAN FT NGFTHRGTHHCASSGEWRVYMGDNKSPVFQDIRRGGDPVQNDEGLPRTNPVQPQPEESV FT GSPQGVPQLPSLDSIGDSFWADLFK" FT CDS complement(1502. .2581) FT /codon_start=1 FT /product="replication-associated protein" FT /note="REP" FT /protein_id="AER09299.1" FT /translation="MPSAPKRFLINARNYFLTYPKCSLTKEEALSQLQALATPTNKKFI FT KVARELHDNGEPHLHVLLQFEGKFKCQNQRFFDLVSPSRSAHFHPNVQGAKSSSDVKSY FT VDKDGDTLEWGTFQIDGRSARGGCQSANDTYAKVLNAESAAQALQILREEQPRDFVLHL FT DKVQAHVQKIFAKAPEPWVPPFPLSSFTNVPDEMQSWADEYFALSAEARPNRPISLIVE FT GDSRTGKTMWARALGPHNYLSGHLDFNSRVYSNEVAYNVIDDVAPHYLKLKHWKELVGA FT QRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKDFLEKEENSSLRSWTLHNARFVFL FT ESPLYQGATQSGETESHSP" FT CDS complement(2128. .2421) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /protein_id="AER09303.1" FT /translation="MGSLISTCFSNSRGSSNARIKDSSTWYPRPGQHISIRTYRELSRA FT PTSSPTSTKTGILWNGEHSRSTGEVLEAVANRLTTHTPKSLTPSLQRKHCRF" XX SQ Sequence 2726 BP; 649 A; 632 C; 743 G; 702 T; 0 other; jn103430 Length: 2726 07-DEC-2011 Type: N Check: 7719 .. 1 accggatggc cgcttgatct gttttatgtt cggcccgcgc aagcggaaga 51 gttgggccga cgatggcaaa aaactcggcc catgatgaga ggagatgata 101 gggggaccat gtcccaaaaa aggaacgtat gatgggacca cataaagaca 151 gtgattacgc ccaataagga ttgggcaaca aagccaagat attgaaatat 201 acttggccga taagttgata aagtgtataa atgggaccat cacccttcgt 251 ggtctagtca gccccgaata ggactcgacg ttctgtggtg cagaatgcct 301 aagcgtgatg ccccatggcg aacggtttca gggaccacga aggttagccg 351 caacgccaac tactcccctc gtggaggcac gggctcaaga ccaagcaggg 401 ccgctgcttg gattaatcgg cccatgtata ggaagcccag aatatatcgg 451 atgtataggt cacccgatgt gcccagaggg tgtgaaggcc cgtgcaaggt 501 gcagtcatac gagcagcgcc acgatatatc ccacaccggc aaggtgatat 551 gcgtgtctga cattacccgc ggtaatggta ttactcaccg cgttggtaag 601 cgattttgcg tcaagtctat gtacatccta ggcaaggtct ggatggacga 651 gaacatcaag ttgaagaacc acacgaacac ggtgatgttg tggttagtta 701 gggacaggag accttacggg acggccatgg atttcggaca ggtttttaac 751 ctgtttgaca acgagccaag caccgctacg gtgaagaacg atctccgtga 801 tcgttttcag gtgctgaaca ggttccacgt gaaggtcact ggtggacagt 851 acgcgagcaa cgagcaggcg ctggttaggc gcttttggag ggtgaacacc 901 cacgtgacgt ataaccacca ggaggcggcg aagtacgaga accatacgga 951 gaacgccctg ttattgtata tggcatgtac tcatgcctct aaccctgtat 1001 acgcgacgct caagattcga atctatttct acgattcgat attgaattaa 1051 taaagtttga attgtattga atggttctcg cgtacacgtc ttacatacgg 1101 tctgtccgtt gcgaaggtga cagctcgaat tacattgtta aggctaataa 1151 cgcccacgtt atttagatac atgaggacca aatgtttaaa cctatttaaa 1201 taggtctgcc cagaagctgt caccgatact gtccagactt ggaagttgag 1251 gaacgccttg tggagatcca acgctttcct caggttgtgg ttgaaccgga 1301 tttgtacgtg gtagaccctc gtcgttctgg acaggatctc caccgcgtcg 1351 tatatcttga aatacagggg atttgttatc tcccatgtat acacgccatt 1401 ctccgcttga ggcgcagtga tgggttcccc tgtgcgtgaa tccattattc 1451 gcgcagttta ggtggatgta tattgtacat ccacagttta ggtcgatgcg 1501 tctacggcga atggctctcc gtttcgccac tctgtgttgc accttgatag 1551 aggggagatt cgaggaagac gaacctcgca ttgtgaaggg tccacgaccg 1601 gagtgatgag ttctcctctt tctcgaggaa gtctttatag ctggaccctt 1651 caccaggatt gcaaagcacg attgatggga taccgccttt aatttgaacg 1701 ggtttcccgt atttgcagtt actttgccag tctcgttggg ccccaacgag 1751 ttctttccag tgctttagct ttaggtagtg cggggcaacg tcatcgatga 1801 cgttgtatgc gacttcgttt gagtagaccc tcgagttgaa gtcgaggtgt 1851 ccactgagat aattgtgggg acctaaagca cgcgcccaca tcgtcttccc 1901 cgtcctcgaa tctccttcga cgatcagact tatcggtctg tttggccgcg 1951 cttcggcgga taaggcgaaa tactcatcgg cccacgactg catttcgtcc 2001 ggaacgttag tgaatgagga caacgggaac ggagggaccc atggttccgg 2051 agccttagcg aagattttct ggacatgtgc ttgcaccttg tctaaatgga 2101 ggacgaaatc ccgcggttgc tcttccctta gaatctgcag tgcttgcgct 2151 gcagactcgg cgttaaggac tttggcgtat gtgtcgttag ccgattggca 2201 accgcctcta gcacttctcc cgtcgatctg gaatgttccc cattccagag 2251 tatccccgtc tttgtcgacg taggacttga cgtcggagct cgacttagct 2301 ccctgtacgt tcggatggaa atgtgctgac cgggacgggg ataccaggtc 2351 gaagaatctt tgattctggc atttgaactt cccctcgaat tggagaagca 2401 cgtggagatg aggctcccca ttatcgtgga gctctctggc gaccttgatg 2451 aacttcttgt tcgtcggcgt tgctagggct tgcaattggg aaagtgcttc 2501 ctctttggtc agggagcact ttggataagt gaggaaataa tttctggcgt 2551 ttattaggaa acgctttggc gccgatggca ttttggtaaa taaagggatg 2601 agacccaata gagaggaccc gatagctctc gtttcaactt ggtgaaatga 2651 atcggggaat gggtccttat ttatagcata gtccgttagg gtatatttgc 2701 cacgtgtcgg ccatccgtat aatatt