Sequence of DPV Cleome leaf crumple virus

Cleome leaf crumple virus isolate BR:BA-Cds1:10 segment DNA-A, complete sequence.

ACC No: JN103439

Dated: 2011-12-07 | Length: 2733 | CRC: 1363781760

                
ID   JN103439; SV 1; circular; genomic DNA; STD; VRL; 2733 BP.
XX
AC   JN103439;
XX
DT   26-OCT-2011 (Rel. 110, Created)
DT   07-DEC-2011 (Rel. 111, Last updated, Version 2)
XX
DE   Cleome leaf crumple virus isolate BR:BA-Cds1:10 segment DNA-A, complete
DE   sequence.
XX
KW   .
XX
OS   Cleome leaf crumple virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC   unclassified Begomovirus.
XX
RN   [1]
RP   1-2733
RX   PUBMED; 22006043.
RA   da Silva S.J., Castillo-Urquiza G.P., Hora Junior B.T., Assuncao I.P.,
RA   Lima G.S., Pio-Ribeiro G., Mizubuti E.S., Zerbini F.M.;
RT   "High genetic variability and recombination in a begomovirus population
RT   infecting the ubiquitous weed Cleome affinis in northeastern Brazil";
RL   Arch. Virol. 156(12):2205-2213(2011).
XX
RN   [2]
RP   1-2733
RA   da Silva S.J.C., Castillo-Urquiza G.P., Hora-Junior B.T., Assuncao I.P.,
RA   Lima G.S.A., Pio-Ribeiro G., Mizubuti E.S.G., Zerbini F.M.;
RT   ;
RL   Submitted (09-JUN-2011) to the INSDC.
RL   Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n,
RL   Vicosa, Minas Gerais 36570-000, Brazil
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2733
FT                   /organism="Cleome leaf crumple virus"
FT                   /segment="DNA-A"
FT                   /host="Cleome affinis"
FT                   /isolate="BR:BA-Cds1:10"
FT                   /mol_type="genomic DNA"
FT                   /country="Brazil:Costa do Sauipe, Bahia"
FT                   /collection_date="02-Jan-2010"
FT                   /db_xref="taxon:666144"
FT   CDS             296. .1051
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /protein_id="AER09345.1"
FT                   /translation="MPKRDAPWRTVSGTTKVSRNANYSPRGGTGSRPSRAAAWINRPMY
FT                   RKPRIYRMYRSPDVPRGCEGPCKVQSYEQRHDISHTGKVICVSDITRGNGITHRVGKRF
FT                   CVKSMYILGKVWMDENIKLKNHTNTVMLWLVRDRRPYGTAMDFGQVFNLFDNEPSTATV
FT                   KNDLRDRFQVLNRFHVKVTGGQYASNEQALVRRFWRVNTHVTYNHQEAAKYENHTENAL
FT                   LLYMACTHASNPVYATLKIRIYFYDSILN"
FT   CDS             complement(1048. .1446)
FT                   /codon_start=1
FT                   /product="replication-enhancer protein"
FT                   /note="REN"
FT                   /protein_id="AER09346.1"
FT                   /translation="MDSRTGEPITAPQAENGVYTWEITNPLYFKIYDAVEILSRTTRVY
FT                   HVQIRFNHNLRKALDLHKAFLNFQVWTVSVTASGQTYLNRFKHLVLMYLNSVGVISLNN
FT                   VIRAVTFATDRPYVRRVRENHSIQFKLY"
FT   CDS             complement(1193. .1582)
FT                   /codon_start=1
FT                   /product="transactivating protein"
FT                   /note="TRAP"
FT                   /protein_id="AER09347.1"
FT                   /translation="MRGSSSSNLPSIKVQHRVAKRRAIRRRRIDLNCGCTIYIHLNCAN
FT                   NGFTHRGTHHCASSGEWRVYMGDNKSPVFQDIRRGGDPVQNDEGLPRTNPVQPQPEESV
FT                   GSPQGVPQLPSLDSIGDSFWADLFK"
FT   CDS             complement(1503. .2588)
FT                   /codon_start=1
FT                   /product="replication-associated protein"
FT                   /note="REP"
FT                   /protein_id="AER09344.1"
FT                   /translation="MPSAPKRFLINARNYFLTYPKCSLTKEEALSQLQALATPTNKKFI
FT                   KVARELHDNGEPHLHVLLQFEGKFKCQNQRFFDLVSPSRSAHFHPNVQGAKSSSDVKSY
FT                   VDKDGDTLEWGTFQIDGRSARGGCQSANDTYAKVLNAESAAQALQILREEQPRDFVLHL
FT                   DKVQAHVQKIFAKAPEPWVPPFPLSSFTNVPDEMQSWADEYFALSAEARPNRPISLIVE
FT                   GDSRTGKTMWARALGPHNYLSGHLDFNSRVYSNGVAYNVIDIDDVAPHYLKLKHWKELV
FT                   GAQRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKDFLEKEENSSLRSWTLHNARFV
FT                   FLESPLYQGATQSGETESHSP"
FT   CDS             complement(2135. .2428)
FT                   /codon_start=1
FT                   /product="AC4 protein"
FT                   /note="AC4"
FT                   /protein_id="AER09348.1"
FT                   /translation="MGSLISTCFSNSRGSSNARIKDSSTWYPRPGQHISIRTYRELSRA
FT                   PTSSPTSTKTGILWNGEHSRSTGEVLEAVANRLTTHTPKSLTPSLQRKHCRF"
XX
SQ   Sequence 2733 BP; 651 A; 637 C; 744 G; 701 T; 0 other;

jn103439 Length: 2733  07-DEC-2011  Type: N  Check: 363  ..

       1  accggatggc cgcttgatct gttttatgtt cggcccgcgc aagcggaaga
      51  gttgggccga cgatggcaaa aaactcggcc catgatgaga ggagatgata
     101  gggggaccat gtcccaaaaa aggaacgtat gatgggacca cataaagaca
     151  gtgattacgc ccaataagga ttgggcaaca aagccaagat attgaaatat
     201  acttggccga taagttgata aagttgtata aatgggacca tcacccttcg
     251  tggtctagtc agccccgaat aggactcgac gttctgtagt gcagaatgcc
     301  taagcgtgat gccccatggc gaacggtttc agggaccacg aaggttagcc
     351  gcaacgccaa ctactcccct cgtggaggca cgggctcaag accaagcagg
     401  gccgctgctt ggattaatcg gcccatgtac aggaagccca gaatatatcg
     451  gatgtatagg tcacccgatg tgcccagagg gtgtgaaggc ccgtgcaagg
     501  tgcagtcata cgagcagcgc cacgatatat cccacaccgg caaggtgata
     551  tgcgtgtctg acattacccg cggtaatggt attactcacc gcgttggtaa
     601  gcgattttgc gtcaagtcta tgtacatcct aggcaaggtc tggatggacg
     651  agaacatcaa gttgaagaac cacacgaaca cggtgatgtt gtggttagtt
     701  agggacagga gaccttacgg gacggccatg gatttcggac aggtttttaa
     751  cctgtttgac aacgagccaa gcaccgctac ggtgaagaac gatctccgtg
     801  atcgttttca ggtgctgaac aggttccacg tgaaggtcac tggtggacag
     851  tacgcgagca acgagcaggc gctggttagg cgcttttgga gggtgaacac
     901  ccacgtgacg tataaccacc aggaggcggc gaagtacgag aaccatacgg
     951  agaacgccct gttattgtat atggcatgta ctcatgcctc taaccctgta
    1001  tacgcgacgc tcaagattcg aatctatttc tacgattcga tattgaatta
    1051  ataaagtttg aattgtattg aatggttctc gcgtacacgt cttacatacg
    1101  gtctgtccgt tgcgaaggtg acagctcgaa ttacattgtt aaggctaata
    1151  acgcccacgc tatttagata catgaggacc aaatgtttaa acctatttaa
    1201  ataggtctgc ccagaagctg tcaccgatac tgtccagact tggaagttga
    1251  ggaacgcctt gtggagatcc aacgctttcc tcaggttgtg gttgaaccgg
    1301  atttgtacgt ggtagaccct cgtcgttctg gacaggatct ccaccgcgtc
    1351  gtatatcttg aaatacaggg gatttgttat ctcccatgta tacacgccat
    1401  tctccgcttg aggcgcagtg atgggttccc ctgtgcgtga atccattatt
    1451  cgcgcagttt aggtggatgt atattgtaca tccacagttc aggtcgatgc
    1501  gtctacggcg aatggctctc cgtttcgcca ctctgtgttg caccttgata
    1551  gaggggagat tcgaggaaga cgaacctcgc attgtgaagg gtccacgacc
    1601  ggagtgatga gttttcctct ttctcgagga agtctttata gctggaccct
    1651  tccccaggat tgcaaagcac gattgatggg ataccgcctt taatttgaac
    1701  gggtttcccg tatttgcagt tactttgcca gtctcgttgg gccccaacga
    1751  gttctttcca gtgctttagc tttaggtagt gcggggcaac gtcatcgata
    1801  tcgatgacgt tgtatgcgac tccgtttgag tagaccctcg agttgaagtc
    1851  gaggtgtcca ctgagataat tgtggggacc taaagcacgc gcccacatcg
    1901  tcttccccgt cctcgaatct ccttcgacga tcagacttat cggtctgttt
    1951  ggccgcgctt cggcggataa ggcgaaatac tcatcggccc acgactgcat
    2001  ttcgtccgga acgttagtga atgaggacaa cgggaacgga gggacccatg
    2051  gttccggagc cttagcgaag attttctgga catgtgcttg caccttgtct
    2101  aaatggagga cgaaatcccg cggttgctct tcccttagaa tctgcagtgc
    2151  ttgcgctgca gactcggcgt taaggacttt ggcgtatgtg tcgttagccg
    2201  attggcaacc gcctctagca cttctcccgt cgatctggaa tgttccccat
    2251  tccagagtat ccccgtcttt gtcgacgtag gacttgacgt cggagctcga
    2301  cttagctccc tgtacgttcg gatggaaatg tgctgaccgg gacggggata
    2351  ccaggtcgaa gaatctttga ttctggcatt tgaacttccc ctcgaattgg
    2401  agaagcacgt ggagatgagg ctccccatta tcgtggagct ctctggcgac
    2451  cttgatgaac ttcttgttcg tcggcgttgc tagggcttgc aattgggaaa
    2501  gtgcttcctc tttggtcagg gagcactttg gataagtgag gaaataattt
    2551  ctggcgttta ttaggaaacg ctttggcgcc gatggcattt tggtaaataa
    2601  agggatgaga cccaatagag aggacccgat agctctcgtt tcaacttggt
    2651  gaaatgaatc ggggaatggg tccttattta tagcagagtc cgttagggta
    2701  tatttgccac gtgtcggcca tccgtataat att