Sequence of DPV Cleome leaf crumple virus
Cleome leaf crumple virus isolate BR:BA-Cds1:10 segment DNA-A, complete sequence.
ACC No: JN103439
Dated: 2011-12-07 | Length: 2733 | CRC: 1363781760
ID JN103439; SV 1; circular; genomic DNA; STD; VRL; 2733 BP. XX AC JN103439; XX DT 26-OCT-2011 (Rel. 110, Created) DT 07-DEC-2011 (Rel. 111, Last updated, Version 2) XX DE Cleome leaf crumple virus isolate BR:BA-Cds1:10 segment DNA-A, complete DE sequence. XX KW . XX OS Cleome leaf crumple virus OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus; OC unclassified Begomovirus. XX RN [1] RP 1-2733 RX PUBMED; 22006043. RA da Silva S.J., Castillo-Urquiza G.P., Hora Junior B.T., Assuncao I.P., RA Lima G.S., Pio-Ribeiro G., Mizubuti E.S., Zerbini F.M.; RT "High genetic variability and recombination in a begomovirus population RT infecting the ubiquitous weed Cleome affinis in northeastern Brazil"; RL Arch. Virol. 156(12):2205-2213(2011). XX RN [2] RP 1-2733 RA da Silva S.J.C., Castillo-Urquiza G.P., Hora-Junior B.T., Assuncao I.P., RA Lima G.S.A., Pio-Ribeiro G., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (09-JUN-2011) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, Minas Gerais 36570-000, Brazil XX FH Key Location/Qualifiers FH FT source 1. .2733 FT /organism="Cleome leaf crumple virus" FT /segment="DNA-A" FT /host="Cleome affinis" FT /isolate="BR:BA-Cds1:10" FT /mol_type="genomic DNA" FT /country="Brazil:Costa do Sauipe, Bahia" FT /collection_date="02-Jan-2010" FT /db_xref="taxon:666144" FT CDS 296. .1051 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /protein_id="AER09345.1" FT /translation="MPKRDAPWRTVSGTTKVSRNANYSPRGGTGSRPSRAAAWINRPMY FT RKPRIYRMYRSPDVPRGCEGPCKVQSYEQRHDISHTGKVICVSDITRGNGITHRVGKRF FT CVKSMYILGKVWMDENIKLKNHTNTVMLWLVRDRRPYGTAMDFGQVFNLFDNEPSTATV FT KNDLRDRFQVLNRFHVKVTGGQYASNEQALVRRFWRVNTHVTYNHQEAAKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSILN" FT CDS complement(1048. .1446) FT /codon_start=1 FT /product="replication-enhancer protein" FT /note="REN" FT /protein_id="AER09346.1" FT /translation="MDSRTGEPITAPQAENGVYTWEITNPLYFKIYDAVEILSRTTRVY FT HVQIRFNHNLRKALDLHKAFLNFQVWTVSVTASGQTYLNRFKHLVLMYLNSVGVISLNN FT VIRAVTFATDRPYVRRVRENHSIQFKLY" FT CDS complement(1193. .1582) FT /codon_start=1 FT /product="transactivating protein" FT /note="TRAP" FT /protein_id="AER09347.1" FT /translation="MRGSSSSNLPSIKVQHRVAKRRAIRRRRIDLNCGCTIYIHLNCAN FT NGFTHRGTHHCASSGEWRVYMGDNKSPVFQDIRRGGDPVQNDEGLPRTNPVQPQPEESV FT GSPQGVPQLPSLDSIGDSFWADLFK" FT CDS complement(1503. .2588) FT /codon_start=1 FT /product="replication-associated protein" FT /note="REP" FT /protein_id="AER09344.1" FT /translation="MPSAPKRFLINARNYFLTYPKCSLTKEEALSQLQALATPTNKKFI FT KVARELHDNGEPHLHVLLQFEGKFKCQNQRFFDLVSPSRSAHFHPNVQGAKSSSDVKSY FT VDKDGDTLEWGTFQIDGRSARGGCQSANDTYAKVLNAESAAQALQILREEQPRDFVLHL FT DKVQAHVQKIFAKAPEPWVPPFPLSSFTNVPDEMQSWADEYFALSAEARPNRPISLIVE FT GDSRTGKTMWARALGPHNYLSGHLDFNSRVYSNGVAYNVIDIDDVAPHYLKLKHWKELV FT GAQRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKDFLEKEENSSLRSWTLHNARFV FT FLESPLYQGATQSGETESHSP" FT CDS complement(2135. .2428) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /protein_id="AER09348.1" FT /translation="MGSLISTCFSNSRGSSNARIKDSSTWYPRPGQHISIRTYRELSRA FT PTSSPTSTKTGILWNGEHSRSTGEVLEAVANRLTTHTPKSLTPSLQRKHCRF" XX SQ Sequence 2733 BP; 651 A; 637 C; 744 G; 701 T; 0 other; jn103439 Length: 2733 07-DEC-2011 Type: N Check: 363 .. 1 accggatggc cgcttgatct gttttatgtt cggcccgcgc aagcggaaga 51 gttgggccga cgatggcaaa aaactcggcc catgatgaga ggagatgata 101 gggggaccat gtcccaaaaa aggaacgtat gatgggacca cataaagaca 151 gtgattacgc ccaataagga ttgggcaaca aagccaagat attgaaatat 201 acttggccga taagttgata aagttgtata aatgggacca tcacccttcg 251 tggtctagtc agccccgaat aggactcgac gttctgtagt gcagaatgcc 301 taagcgtgat gccccatggc gaacggtttc agggaccacg aaggttagcc 351 gcaacgccaa ctactcccct cgtggaggca cgggctcaag accaagcagg 401 gccgctgctt ggattaatcg gcccatgtac aggaagccca gaatatatcg 451 gatgtatagg tcacccgatg tgcccagagg gtgtgaaggc ccgtgcaagg 501 tgcagtcata cgagcagcgc cacgatatat cccacaccgg caaggtgata 551 tgcgtgtctg acattacccg cggtaatggt attactcacc gcgttggtaa 601 gcgattttgc gtcaagtcta tgtacatcct aggcaaggtc tggatggacg 651 agaacatcaa gttgaagaac cacacgaaca cggtgatgtt gtggttagtt 701 agggacagga gaccttacgg gacggccatg gatttcggac aggtttttaa 751 cctgtttgac aacgagccaa gcaccgctac ggtgaagaac gatctccgtg 801 atcgttttca ggtgctgaac aggttccacg tgaaggtcac tggtggacag 851 tacgcgagca acgagcaggc gctggttagg cgcttttgga gggtgaacac 901 ccacgtgacg tataaccacc aggaggcggc gaagtacgag aaccatacgg 951 agaacgccct gttattgtat atggcatgta ctcatgcctc taaccctgta 1001 tacgcgacgc tcaagattcg aatctatttc tacgattcga tattgaatta 1051 ataaagtttg aattgtattg aatggttctc gcgtacacgt cttacatacg 1101 gtctgtccgt tgcgaaggtg acagctcgaa ttacattgtt aaggctaata 1151 acgcccacgc tatttagata catgaggacc aaatgtttaa acctatttaa 1201 ataggtctgc ccagaagctg tcaccgatac tgtccagact tggaagttga 1251 ggaacgcctt gtggagatcc aacgctttcc tcaggttgtg gttgaaccgg 1301 atttgtacgt ggtagaccct cgtcgttctg gacaggatct ccaccgcgtc 1351 gtatatcttg aaatacaggg gatttgttat ctcccatgta tacacgccat 1401 tctccgcttg aggcgcagtg atgggttccc ctgtgcgtga atccattatt 1451 cgcgcagttt aggtggatgt atattgtaca tccacagttc aggtcgatgc 1501 gtctacggcg aatggctctc cgtttcgcca ctctgtgttg caccttgata 1551 gaggggagat tcgaggaaga cgaacctcgc attgtgaagg gtccacgacc 1601 ggagtgatga gttttcctct ttctcgagga agtctttata gctggaccct 1651 tccccaggat tgcaaagcac gattgatggg ataccgcctt taatttgaac 1701 gggtttcccg tatttgcagt tactttgcca gtctcgttgg gccccaacga 1751 gttctttcca gtgctttagc tttaggtagt gcggggcaac gtcatcgata 1801 tcgatgacgt tgtatgcgac tccgtttgag tagaccctcg agttgaagtc 1851 gaggtgtcca ctgagataat tgtggggacc taaagcacgc gcccacatcg 1901 tcttccccgt cctcgaatct ccttcgacga tcagacttat cggtctgttt 1951 ggccgcgctt cggcggataa ggcgaaatac tcatcggccc acgactgcat 2001 ttcgtccgga acgttagtga atgaggacaa cgggaacgga gggacccatg 2051 gttccggagc cttagcgaag attttctgga catgtgcttg caccttgtct 2101 aaatggagga cgaaatcccg cggttgctct tcccttagaa tctgcagtgc 2151 ttgcgctgca gactcggcgt taaggacttt ggcgtatgtg tcgttagccg 2201 attggcaacc gcctctagca cttctcccgt cgatctggaa tgttccccat 2251 tccagagtat ccccgtcttt gtcgacgtag gacttgacgt cggagctcga 2301 cttagctccc tgtacgttcg gatggaaatg tgctgaccgg gacggggata 2351 ccaggtcgaa gaatctttga ttctggcatt tgaacttccc ctcgaattgg 2401 agaagcacgt ggagatgagg ctccccatta tcgtggagct ctctggcgac 2451 cttgatgaac ttcttgttcg tcggcgttgc tagggcttgc aattgggaaa 2501 gtgcttcctc tttggtcagg gagcactttg gataagtgag gaaataattt 2551 ctggcgttta ttaggaaacg ctttggcgcc gatggcattt tggtaaataa 2601 agggatgaga cccaatagag aggacccgat agctctcgtt tcaacttggt 2651 gaaatgaatc ggggaatggg tccttattta tagcagagtc cgttagggta 2701 tatttgccac gtgtcggcca tccgtataat att