Sequence of DPV Pepper cryptic virus 1

Pepper cryptic virus 1 isolate Jal-01 segment RNA2, complete sequence.

ACC No: JN117277

Dated: 2011-09-27 | Length: 1512 | CRC: 1627192072

                
ID   JN117277; SV 1; linear; genomic RNA; STD; VRL; 1512 BP.
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AC   JN117277;
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DT   04-JUL-2011 (Rel. 109, Created)
DT   27-SEP-2011 (Rel. 110, Last updated, Version 2)
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DE   Pepper cryptic virus 1 isolate Jal-01 segment RNA2, complete sequence.
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KW   .
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OS   Pepper cryptic virus 1
OC   Viruses; dsRNA viruses; Partitiviridae; unclassified Partitiviridae.
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RN   [1]
RP   1-1512
RX   DOI; 10.1007/s11262-011-0634-4.
RX   PUBMED; 21695493.
RA   Sabanadzovic S., Valverde R.A.;
RT   "Properties and detection of two cryptoviruses from pepper (Capsicum
RT   annuum)";
RL   Virus Genes 43(2):307-312(2011).
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RN   [2]
RP   1-1512
RA   Sabanadzovic S., Valverde R.A.;
RT   ;
RL   Submitted (13-JUN-2011) to the INSDC.
RL   Biochemistry, Molecular Biology, Entomology and Plant Pathology,
RL   Mississippi State University, 100 Twelve Lane Stop 9775, Mississippi State,
RL   MS 39762, USA
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CC   GenBank Accession Numbers JN117276-JN117277 represent the complete
CC   genome of Pepper cryptic virus 1 isolate Jal-01.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1512
FT                   /organism="Pepper cryptic virus 1"
FT                   /segment="RNA2"
FT                   /host="Capsicum annuum; Jalapeno M"
FT                   /isolate="Jal-01"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="05-Jul-2009"
FT                   /db_xref="taxon:369643"
FT   CDS             96. .1334
FT                   /codon_start=1
FT                   /product="putative coat protein"
FT                   /db_xref="UniProtKB/TrEMBL:F8VBM8"
FT                   /protein_id="AEJ07891.1"
FT                   /translation="MGDRVNAQDDDTVVPHQAPLQPAALQQDLTRSADYLLDNVRIGNH
FT                   RQRYDKYRRYVLLRSSEIFTSLVAIYAHIFSSYWQHFRRFTDQFQAPTGVQLPTFVARV
FT                   YISTWLHDLYCSIREATRSISPLAFNERYSYELLPYSTEYDPFLAFLSMSIKPTHIQHT
FT                   PENTLWIPILCENYDWDRNEANHNPFGITNFTLNSNLFYGLLAILKERKEFKLSTLTTN
FT                   TIGRPCWLFDWHDNVQVCAWFPREANFNSQDVTAAYIIGVACTPKLGPSDDDAWKYYAS
FT                   LNSVPTFTPTEPRLTNRRSYGAYEVRTRETENNYFLPDSLLNIIEDFTATGTTQRRKIR
FT                   RPSATSASTGAAIIIRDTPGTASTATTSTTETEVTFPPVIRTKIRDWYYHSRVILELED
FT                   NSRTAALRMFIIA"
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SQ   Sequence 1512 BP; 428 A; 399 C; 263 G; 422 T; 0 other;

jn117277 Length: 1512  27-SEP-2011  Type: N  Check: 8153  ..

       1  agaatttgac ctgaacccca tatcaggatc gaattattta caaattcacc
      51  aaacacgtct aagcttgtga aaattattgt tatccctaca ttaacatggg
     101  cgatcgtgtt aacgctcaag acgacgatac agtcgtccct caccaagcac
     151  ctcttcaacc agcagctctt cagcaagacc tcaccagatc tgccgactac
     201  ttattagaca acgtccgtat tggcaaccac cgacaacgct atgataaata
     251  ccgtcgctat gtccttctca gatccagcga aatattcact agtctcgtcg
     301  ccatttacgc tcacatcttt tctagttatt ggcaacactt tcggaggttc
     351  actgatcaat ttcaagctcc aactggagtc caactcccca cttttgtggc
     401  acgagtctac atctccactt ggcttcatga tctatactgc tctattcgag
     451  aggccactag aagtatttct ccattagcct ttaatgagag gtactcatat
     501  gaattgctcc catactccac cgagtacgac ccctttctcg catttctgtc
     551  tatgtctatt aaaccaacac atattcagca tactcccgag aacacattat
     601  ggattcctat cctttgtgaa aattacgact gggatcgaaa cgaagcaaat
     651  cacaaccctt ttggcattac taatttcaca ttgaatagta acctattcta
     701  tgggctttta gcgatactga aagaacggaa ggagtttaag ttatcaactc
     751  tgactactaa tacaataggc cgaccctgtt ggctctttga ttggcacgac
     801  aacgtgcaag tctgcgcatg gtttccccgt gaagcaaact tcaacagtca
     851  agatgtaacc gccgcttaca tcattggagt agcctgtact cccaaactag
     901  gacccagcga tgacgacgca tggaaatact atgcatccct caactctgta
     951  ccaactttca caccaactga gccgcgtctc accaatcgtc ggtcatacgg
    1001  tgcttatgaa gtccgcactc gtgaaactga aaataactat ttcttaccag
    1051  atagtcttct caacatcatc gaggatttta ccgcaacagg tacaacacaa
    1101  cgaaggaaga tccgtcgccc ttcagctacg tccgcgtcta ccggagccgc
    1151  tatcattatc agagatacgc ccggaacagc gtccactgca accacgtcca
    1201  ctacggagac cgaagttacc ttccctccag tcatcaggac taagattaga
    1251  gactggtact accactctcg tgtaattcta gaacttgaag acaattctag
    1301  gacagcagct ttaagaatgt ttatcattgc ttaattagct ttcctttatg
    1351  cttttgtcat gttataaaca atttcgttta attttaatat taatcgcagt
    1401  taattttata catgtgctct gttatttgat atcagttccg cataatggac
    1451  aggctacaat acccttcagt agggtcacaa acgtgaccca ggaagctgta
    1501  ttgcaccctg ct