Sequence of DPV Pepper cryptic virus 1
Pepper cryptic virus 1 isolate Jal-01 segment RNA2, complete sequence.
ACC No: JN117277
Dated: 2011-09-27 | Length: 1512 | CRC: 1627192072
ID JN117277; SV 1; linear; genomic RNA; STD; VRL; 1512 BP. XX AC JN117277; XX DT 04-JUL-2011 (Rel. 109, Created) DT 27-SEP-2011 (Rel. 110, Last updated, Version 2) XX DE Pepper cryptic virus 1 isolate Jal-01 segment RNA2, complete sequence. XX KW . XX OS Pepper cryptic virus 1 OC Viruses; dsRNA viruses; Partitiviridae; unclassified Partitiviridae. XX RN [1] RP 1-1512 RX DOI; 10.1007/s11262-011-0634-4. RX PUBMED; 21695493. RA Sabanadzovic S., Valverde R.A.; RT "Properties and detection of two cryptoviruses from pepper (Capsicum RT annuum)"; RL Virus Genes 43(2):307-312(2011). XX RN [2] RP 1-1512 RA Sabanadzovic S., Valverde R.A.; RT ; RL Submitted (13-JUN-2011) to the INSDC. RL Biochemistry, Molecular Biology, Entomology and Plant Pathology, RL Mississippi State University, 100 Twelve Lane Stop 9775, Mississippi State, RL MS 39762, USA XX CC GenBank Accession Numbers JN117276-JN117277 represent the complete CC genome of Pepper cryptic virus 1 isolate Jal-01. XX FH Key Location/Qualifiers FH FT source 1. .1512 FT /organism="Pepper cryptic virus 1" FT /segment="RNA2" FT /host="Capsicum annuum; Jalapeno M" FT /isolate="Jal-01" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="05-Jul-2009" FT /db_xref="taxon:369643" FT CDS 96. .1334 FT /codon_start=1 FT /product="putative coat protein" FT /db_xref="UniProtKB/TrEMBL:F8VBM8" FT /protein_id="AEJ07891.1" FT /translation="MGDRVNAQDDDTVVPHQAPLQPAALQQDLTRSADYLLDNVRIGNH FT RQRYDKYRRYVLLRSSEIFTSLVAIYAHIFSSYWQHFRRFTDQFQAPTGVQLPTFVARV FT YISTWLHDLYCSIREATRSISPLAFNERYSYELLPYSTEYDPFLAFLSMSIKPTHIQHT FT PENTLWIPILCENYDWDRNEANHNPFGITNFTLNSNLFYGLLAILKERKEFKLSTLTTN FT TIGRPCWLFDWHDNVQVCAWFPREANFNSQDVTAAYIIGVACTPKLGPSDDDAWKYYAS FT LNSVPTFTPTEPRLTNRRSYGAYEVRTRETENNYFLPDSLLNIIEDFTATGTTQRRKIR FT RPSATSASTGAAIIIRDTPGTASTATTSTTETEVTFPPVIRTKIRDWYYHSRVILELED FT NSRTAALRMFIIA" XX SQ Sequence 1512 BP; 428 A; 399 C; 263 G; 422 T; 0 other; jn117277 Length: 1512 27-SEP-2011 Type: N Check: 8153 .. 1 agaatttgac ctgaacccca tatcaggatc gaattattta caaattcacc 51 aaacacgtct aagcttgtga aaattattgt tatccctaca ttaacatggg 101 cgatcgtgtt aacgctcaag acgacgatac agtcgtccct caccaagcac 151 ctcttcaacc agcagctctt cagcaagacc tcaccagatc tgccgactac 201 ttattagaca acgtccgtat tggcaaccac cgacaacgct atgataaata 251 ccgtcgctat gtccttctca gatccagcga aatattcact agtctcgtcg 301 ccatttacgc tcacatcttt tctagttatt ggcaacactt tcggaggttc 351 actgatcaat ttcaagctcc aactggagtc caactcccca cttttgtggc 401 acgagtctac atctccactt ggcttcatga tctatactgc tctattcgag 451 aggccactag aagtatttct ccattagcct ttaatgagag gtactcatat 501 gaattgctcc catactccac cgagtacgac ccctttctcg catttctgtc 551 tatgtctatt aaaccaacac atattcagca tactcccgag aacacattat 601 ggattcctat cctttgtgaa aattacgact gggatcgaaa cgaagcaaat 651 cacaaccctt ttggcattac taatttcaca ttgaatagta acctattcta 701 tgggctttta gcgatactga aagaacggaa ggagtttaag ttatcaactc 751 tgactactaa tacaataggc cgaccctgtt ggctctttga ttggcacgac 801 aacgtgcaag tctgcgcatg gtttccccgt gaagcaaact tcaacagtca 851 agatgtaacc gccgcttaca tcattggagt agcctgtact cccaaactag 901 gacccagcga tgacgacgca tggaaatact atgcatccct caactctgta 951 ccaactttca caccaactga gccgcgtctc accaatcgtc ggtcatacgg 1001 tgcttatgaa gtccgcactc gtgaaactga aaataactat ttcttaccag 1051 atagtcttct caacatcatc gaggatttta ccgcaacagg tacaacacaa 1101 cgaaggaaga tccgtcgccc ttcagctacg tccgcgtcta ccggagccgc 1151 tatcattatc agagatacgc ccggaacagc gtccactgca accacgtcca 1201 ctacggagac cgaagttacc ttccctccag tcatcaggac taagattaga 1251 gactggtact accactctcg tgtaattcta gaacttgaag acaattctag 1301 gacagcagct ttaagaatgt ttatcattgc ttaattagct ttcctttatg 1351 cttttgtcat gttataaaca atttcgttta attttaatat taatcgcagt 1401 taattttata catgtgctct gttatttgat atcagttccg cataatggac 1451 aggctacaat acccttcagt agggtcacaa acgtgaccca ggaagctgta 1501 ttgcaccctg ct