Sequence of DPV Tuber excavatum mitovirus

Tuber excavatum mitovirus isolate Lammspringe RNA-dependent RNA polymerase gene, complete cds.

ACC No: JN222389

Dated: 2012-04-11 | Length: 3305 | CRC: -2046974644

                
ID   JN222389; SV 1; linear; genomic RNA; STD; VRL; 3305 BP.
XX
AC   JN222389;
XX
DT   10-OCT-2011 (Rel. 110, Created)
DT   11-APR-2012 (Rel. 112, Last updated, Version 4)
XX
DE   Tuber excavatum mitovirus isolate Lammspringe RNA-dependent RNA polymerase
DE   gene, complete cds.
XX
KW   .
XX
OS   Tuber excavatum mitovirus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Narnaviridae;
OC   Mitovirus; unclassified Mitovirus.
XX
RN   [1]
RP   1-3305
RX   PUBMED; 22286751.
RA   Stielow J.B., Bratek Z., Klenk H.P., Winter S., Menzel W.;
RT   "A novel mitovirus from the hypogeous ectomycorrhizal fungus Tuber
RT   excavatum";
RL   Arch. Virol. 157(4):787-790(2012).
XX
RN   [2]
RP   1-3305
RA   Menzel W., Stielow B., Klenk H.P., Winter S.;
RT   ;
RL   Submitted (06-JUL-2011) to the INSDC.
RL   Plant Virus Department, DSMZ-German Collection of Microorganisms and Cell
RL   Cultures, Inhoffenstrasse 7B, Braunschweig, Lower Saxony 38124, Germany
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .3305
FT                   /organism="Tuber excavatum mitovirus"
FT                   /isolate="Lammspringe"
FT                   /mol_type="genomic RNA"
FT                   /country="Germany"
FT                   /collected_by="Benjamin Stielow"
FT                   /collection_date="2010"
FT                   /db_xref="taxon:1092459"
FT   CDS             794. .3187
FT                   /codon_start=1
FT                   /transl_table=4
FT                   /product="RNA-dependent RNA polymerase"
FT                   /db_xref="GOA:G5CKU6"
FT                   /db_xref="InterPro:IPR008686"
FT                   /db_xref="UniProtKB/TrEMBL:G5CKU6"
FT                   /protein_id="AEP83726.1"
FT                   /translation="MRESMIRFAKITSPATTVAPFVIPSTNNARNSKRYGLASSALRKW
FT                   LMEMLEPQYLGLSQSLVPLMSYSDTKDVNAQEVLVVSLGTIKIWFLEYLVSGKKVQGII
FT                   PNAFWDRSNNCPFLLVDFFKWVESTGRDLRDLRPVIRFMMSWLDLGKVYTIPKNPSLAP
FT                   IISKFSGIDPILKDYNIKDALESLGILTSDSKVAFKSACENFSFHESSAAGPNGHALWA
FT                   SHMDGAAIDNDPKLLKIITSLADKTGLTQVTEMASNSALIVPDASPMREGKLQSAIHSR
FT                   LHLIFEKGIKSRIIAIGDYYSQCLLSPFMVTLRSCLECIPQDYTYNQEAGFSKVLDFTR
FT                   LGKTCYSLDLSKATDRLPLALQERVMGIILGDSELARLWSSLLSSREFVTQTGHKVRYE
FT                   VGQPQGFKSSFHSLAMTHHVIVRLAALKAGEMNFTDYVILGDDIVLTNEKVVKDYMIIM
FT                   ELLGVKISLEKSLFHKDYSSMAEFCKRIACNGHEITGIPMHLLANTIIDPQYTMELWEY
FT                   LASRSICKGFDLYEFFGLFLGDLDFERLGLLNVLPVTVTGMKSRVILEESPLYSTKGFE
FT                   EAFGFSLQDVEHYYYYCLVSDQIAKVDGIIKKASSFLSIALETSKLGYTDGTELVGTGI
FT                   PLTVAIQDKLSKKDSELQVMHPVQSAARTLGVKVVSILNAFAADVSKLPVLLKSGALNA
FT                   LGVSLDALPQFLQMDKTIYGNRRVLDKAIRMLEESVMDESKISRTFIGKVTGVSQAWSV
FT                   SVGLGRGLVVSPQNSVIKGVVGTSKSRLMKMKGASSSSVMRGRK"
XX
SQ   Sequence 3305 BP; 1000 A; 526 C; 720 G; 1059 T; 0 other;

jn222389 Length: 3305  11-APR-2012  Type: N  Check: 4912  ..

       1  gtgaaatcta gatcccttta ctggatggca gacacttcca tagggattga
      51  tttcaagtta gatcttgtta ttatctaact ttaaataatt ataatgactc
     101  ggtaagaata attaaggaac tagtcatccc tttattattt atgattatac
     151  ttgagtgact accaagtact tttcagaatt accaacaatt tatatgatca
     201  taacagatca tatttatgac atgttgcgca ccaggatctt aatctcactt
     251  ccaggagtgt ataaacacct ggacgggttg gtcaaacgcg gaataaagtt
     301  gacccggtaa ggataagaaa ttgccatggg agccgagata tacccgtacg
     351  gtgttgtttg tcggtttgtt aatagaaacc aatagcctga aagcattgga
     401  ggaggacaaa atttgaagaa cgtagtgttc ggaagattat cctctttctt
     451  gtgattaatg aggttaatgc ttgccctata ttatatccat tgcggtactt
     501  ggtgtaggtt taacattagt taaacctaat ccgcaactta ttgataggtt
     551  aaaatgatat atcaagaaaa tttctatatc attagattta ttatttacct
     601  attaataaat gaaaatggat tgaaatcaac ccttaataag gataagttgt
     651  ttctctgttc tttgtttatt ctgtcacggc aggttcatta agtggtactt
     701  agtgtaacta gttctagtaa agtatcgtga ggtcaaaatt caagtcaaac
     751  accaggattt attaatatag agtgagaata tataagttat gttatgagag
     801  agagtatgat tcgttttgca aagattactt cccctgctac tactgtcgca
     851  ccctttgtta ttccgagtac gaacaatgct cgaaattcaa agcgatatgg
     901  tttagcttct tcagccctta ggaagtgact aatggaaatg ttagaacctc
     951  aatatctagg tttatcacag tcgttagttc cattgatgtc ctattccgat
    1001  acaaaggatg ttaatgctca agaggtactt gttgtttctt taggaacaat
    1051  taagatatgg tttcttgaat acctagtctc aggaaagaag gttcaaggta
    1101  taattcctaa tgccttttga gatagatcta ataactgtcc tttcttacta
    1151  gttgatttct tcaaatgggt tgagtcaact gggagagacc tcagggattt
    1201  gaggcccgtt atcaggttta tgatgtcatg attagacctc ggaaaggtgt
    1251  atactatacc taagaatcct agtttggcac cgattatctc caagttttct
    1301  ggtatcgatc ctatattaaa ggattataac attaaagatg ctttggaatc
    1351  attaggaata cttacttcag attctaaggt ggcatttaaa tctgcatgtg
    1401  agaacttttc attccatgaa agctcagcag caggaccgaa tggtcatgct
    1451  ttatgagcat ctcacatgga tggggccgct atagataatg atcctaaatt
    1501  acttaagatc attaccagtc ttgcagataa gactggatta actcaggtga
    1551  ctgagatggc ttcaaactcg gcacttatag tgccggatgc ctcaccgatg
    1601  cgcgaaggta aattacaatc tgctatacat agtagattgc atcttatctt
    1651  tgagaagggt attaagtctc gtattatcgc aataggagat tattactctc
    1701  agtgtctgtt atctccattt atggttacac tacgatcatg tctggaatgt
    1751  atacctcagg attatacata taatcaggag gcaggtttct ctaaggtact
    1801  tgattttaca aggctaggga aaacatgtta ctcactagat ctatctaagg
    1851  ccacagatag actacctctc gctcttcagg agagggttat gggtattata
    1901  ttgggtgaca gtgagttagc gagactctgg tcctcattat tgagttcaag
    1951  agagttcgtc actcagactg ggcataaggt tagatatgag gttggacaac
    2001  cacaggggtt caaatcctca tttcattcct tagctatgac acatcatgtc
    2051  atagttcggt tggctgcatt aaaagccggt gagatgaatt tcactgacta
    2101  tgtaattcta ggagatgata tagtcttgac aaatgagaaa gttgttaagg
    2151  actatatgat catcatggag ttgttaggtg ttaaaatatc tttggagaaa
    2201  tcattattcc acaaagatta ttcatcaatg gcggaattct gtaaaaggat
    2251  tgcatgtaat gggcatgaga ttacagggat tccaatgcac ttgttagcaa
    2301  atactataat agatccacag tataccatgg agttatggga atatttggca
    2351  tctagaagta tttgtaaagg atttgatcta tacgaattct ttgggttgtt
    2401  ccttggagac ctagattttg aaagactggg tttattaaat gtattaccgg
    2451  taacggtaac tggtatgaag agcagagtga ttcttgaaga atcaccatta
    2501  tactcaacaa aagggtttga ggaggcattt ggctttagtt tacaggatgt
    2551  tgagcactat tattattatt gtttagtctc tgatcagatt gcaaaggtag
    2601  atgggataat caagaaggca tctagtttct tgtccattgc gcttgagaca
    2651  agtaaattag gttatactga tggtactgag cttgtaggaa cagggatacc
    2701  attaactgta gctatacagg ataaactatc aaagaaggat agtgagttac
    2751  aagtaatgca tcctgtacag tctgcagcac ggacacttgg tgttaaggta
    2801  gtcagtatac tgaatgcatt tgcagctgat gtatctaagt taccagtatt
    2851  attaaaatct ggtgcactta atgcattagg tgtttcttta gatgcactac
    2901  cacaattctt acagatggat aagaccatct atgggaatag aagagtgctg
    2951  gataaagcta tacgaatgct agaagaatct gttatggatg agtctaagat
    3001  atctcgtacc tttataggta aagtgacagg tgtatctcag gcgtgatcag
    3051  tgtctgtcgg tttaggaaga ggattagtag tgagtcctca gaatagtgtg
    3101  attaaaggtg tagttgggac atctaaatca cgactaatga agatgaaagg
    3151  agcatcatct tcatcagtga tgcgcggtcg gaagtagggt cgttttaatt
    3201  gcttggcggg tcaggtcatg ggtttgccgt atggtaaacc taaccctgtg
    3251  tatgttagta cgggtgtaaa tacgagatta ctatacgaac atggtaattt
    3301  ccccc