Sequence of DPV Tuber excavatum mitovirus
Tuber excavatum mitovirus isolate Lammspringe RNA-dependent RNA polymerase gene, complete cds.
ACC No: JN222389
Dated: 2012-04-11 | Length: 3305 | CRC: -2046974644
ID JN222389; SV 1; linear; genomic RNA; STD; VRL; 3305 BP. XX AC JN222389; XX DT 10-OCT-2011 (Rel. 110, Created) DT 11-APR-2012 (Rel. 112, Last updated, Version 4) XX DE Tuber excavatum mitovirus isolate Lammspringe RNA-dependent RNA polymerase DE gene, complete cds. XX KW . XX OS Tuber excavatum mitovirus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Narnaviridae; OC Mitovirus; unclassified Mitovirus. XX RN [1] RP 1-3305 RX PUBMED; 22286751. RA Stielow J.B., Bratek Z., Klenk H.P., Winter S., Menzel W.; RT "A novel mitovirus from the hypogeous ectomycorrhizal fungus Tuber RT excavatum"; RL Arch. Virol. 157(4):787-790(2012). XX RN [2] RP 1-3305 RA Menzel W., Stielow B., Klenk H.P., Winter S.; RT ; RL Submitted (06-JUL-2011) to the INSDC. RL Plant Virus Department, DSMZ-German Collection of Microorganisms and Cell RL Cultures, Inhoffenstrasse 7B, Braunschweig, Lower Saxony 38124, Germany XX FH Key Location/Qualifiers FH FT source 1. .3305 FT /organism="Tuber excavatum mitovirus" FT /isolate="Lammspringe" FT /mol_type="genomic RNA" FT /country="Germany" FT /collected_by="Benjamin Stielow" FT /collection_date="2010" FT /db_xref="taxon:1092459" FT CDS 794. .3187 FT /codon_start=1 FT /transl_table=4 FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:G5CKU6" FT /db_xref="InterPro:IPR008686" FT /db_xref="UniProtKB/TrEMBL:G5CKU6" FT /protein_id="AEP83726.1" FT /translation="MRESMIRFAKITSPATTVAPFVIPSTNNARNSKRYGLASSALRKW FT LMEMLEPQYLGLSQSLVPLMSYSDTKDVNAQEVLVVSLGTIKIWFLEYLVSGKKVQGII FT PNAFWDRSNNCPFLLVDFFKWVESTGRDLRDLRPVIRFMMSWLDLGKVYTIPKNPSLAP FT IISKFSGIDPILKDYNIKDALESLGILTSDSKVAFKSACENFSFHESSAAGPNGHALWA FT SHMDGAAIDNDPKLLKIITSLADKTGLTQVTEMASNSALIVPDASPMREGKLQSAIHSR FT LHLIFEKGIKSRIIAIGDYYSQCLLSPFMVTLRSCLECIPQDYTYNQEAGFSKVLDFTR FT LGKTCYSLDLSKATDRLPLALQERVMGIILGDSELARLWSSLLSSREFVTQTGHKVRYE FT VGQPQGFKSSFHSLAMTHHVIVRLAALKAGEMNFTDYVILGDDIVLTNEKVVKDYMIIM FT ELLGVKISLEKSLFHKDYSSMAEFCKRIACNGHEITGIPMHLLANTIIDPQYTMELWEY FT LASRSICKGFDLYEFFGLFLGDLDFERLGLLNVLPVTVTGMKSRVILEESPLYSTKGFE FT EAFGFSLQDVEHYYYYCLVSDQIAKVDGIIKKASSFLSIALETSKLGYTDGTELVGTGI FT PLTVAIQDKLSKKDSELQVMHPVQSAARTLGVKVVSILNAFAADVSKLPVLLKSGALNA FT LGVSLDALPQFLQMDKTIYGNRRVLDKAIRMLEESVMDESKISRTFIGKVTGVSQAWSV FT SVGLGRGLVVSPQNSVIKGVVGTSKSRLMKMKGASSSSVMRGRK" XX SQ Sequence 3305 BP; 1000 A; 526 C; 720 G; 1059 T; 0 other; jn222389 Length: 3305 11-APR-2012 Type: N Check: 4912 .. 1 gtgaaatcta gatcccttta ctggatggca gacacttcca tagggattga 51 tttcaagtta gatcttgtta ttatctaact ttaaataatt ataatgactc 101 ggtaagaata attaaggaac tagtcatccc tttattattt atgattatac 151 ttgagtgact accaagtact tttcagaatt accaacaatt tatatgatca 201 taacagatca tatttatgac atgttgcgca ccaggatctt aatctcactt 251 ccaggagtgt ataaacacct ggacgggttg gtcaaacgcg gaataaagtt 301 gacccggtaa ggataagaaa ttgccatggg agccgagata tacccgtacg 351 gtgttgtttg tcggtttgtt aatagaaacc aatagcctga aagcattgga 401 ggaggacaaa atttgaagaa cgtagtgttc ggaagattat cctctttctt 451 gtgattaatg aggttaatgc ttgccctata ttatatccat tgcggtactt 501 ggtgtaggtt taacattagt taaacctaat ccgcaactta ttgataggtt 551 aaaatgatat atcaagaaaa tttctatatc attagattta ttatttacct 601 attaataaat gaaaatggat tgaaatcaac ccttaataag gataagttgt 651 ttctctgttc tttgtttatt ctgtcacggc aggttcatta agtggtactt 701 agtgtaacta gttctagtaa agtatcgtga ggtcaaaatt caagtcaaac 751 accaggattt attaatatag agtgagaata tataagttat gttatgagag 801 agagtatgat tcgttttgca aagattactt cccctgctac tactgtcgca 851 ccctttgtta ttccgagtac gaacaatgct cgaaattcaa agcgatatgg 901 tttagcttct tcagccctta ggaagtgact aatggaaatg ttagaacctc 951 aatatctagg tttatcacag tcgttagttc cattgatgtc ctattccgat 1001 acaaaggatg ttaatgctca agaggtactt gttgtttctt taggaacaat 1051 taagatatgg tttcttgaat acctagtctc aggaaagaag gttcaaggta 1101 taattcctaa tgccttttga gatagatcta ataactgtcc tttcttacta 1151 gttgatttct tcaaatgggt tgagtcaact gggagagacc tcagggattt 1201 gaggcccgtt atcaggttta tgatgtcatg attagacctc ggaaaggtgt 1251 atactatacc taagaatcct agtttggcac cgattatctc caagttttct 1301 ggtatcgatc ctatattaaa ggattataac attaaagatg ctttggaatc 1351 attaggaata cttacttcag attctaaggt ggcatttaaa tctgcatgtg 1401 agaacttttc attccatgaa agctcagcag caggaccgaa tggtcatgct 1451 ttatgagcat ctcacatgga tggggccgct atagataatg atcctaaatt 1501 acttaagatc attaccagtc ttgcagataa gactggatta actcaggtga 1551 ctgagatggc ttcaaactcg gcacttatag tgccggatgc ctcaccgatg 1601 cgcgaaggta aattacaatc tgctatacat agtagattgc atcttatctt 1651 tgagaagggt attaagtctc gtattatcgc aataggagat tattactctc 1701 agtgtctgtt atctccattt atggttacac tacgatcatg tctggaatgt 1751 atacctcagg attatacata taatcaggag gcaggtttct ctaaggtact 1801 tgattttaca aggctaggga aaacatgtta ctcactagat ctatctaagg 1851 ccacagatag actacctctc gctcttcagg agagggttat gggtattata 1901 ttgggtgaca gtgagttagc gagactctgg tcctcattat tgagttcaag 1951 agagttcgtc actcagactg ggcataaggt tagatatgag gttggacaac 2001 cacaggggtt caaatcctca tttcattcct tagctatgac acatcatgtc 2051 atagttcggt tggctgcatt aaaagccggt gagatgaatt tcactgacta 2101 tgtaattcta ggagatgata tagtcttgac aaatgagaaa gttgttaagg 2151 actatatgat catcatggag ttgttaggtg ttaaaatatc tttggagaaa 2201 tcattattcc acaaagatta ttcatcaatg gcggaattct gtaaaaggat 2251 tgcatgtaat gggcatgaga ttacagggat tccaatgcac ttgttagcaa 2301 atactataat agatccacag tataccatgg agttatggga atatttggca 2351 tctagaagta tttgtaaagg atttgatcta tacgaattct ttgggttgtt 2401 ccttggagac ctagattttg aaagactggg tttattaaat gtattaccgg 2451 taacggtaac tggtatgaag agcagagtga ttcttgaaga atcaccatta 2501 tactcaacaa aagggtttga ggaggcattt ggctttagtt tacaggatgt 2551 tgagcactat tattattatt gtttagtctc tgatcagatt gcaaaggtag 2601 atgggataat caagaaggca tctagtttct tgtccattgc gcttgagaca 2651 agtaaattag gttatactga tggtactgag cttgtaggaa cagggatacc 2701 attaactgta gctatacagg ataaactatc aaagaaggat agtgagttac 2751 aagtaatgca tcctgtacag tctgcagcac ggacacttgg tgttaaggta 2801 gtcagtatac tgaatgcatt tgcagctgat gtatctaagt taccagtatt 2851 attaaaatct ggtgcactta atgcattagg tgtttcttta gatgcactac 2901 cacaattctt acagatggat aagaccatct atgggaatag aagagtgctg 2951 gataaagcta tacgaatgct agaagaatct gttatggatg agtctaagat 3001 atctcgtacc tttataggta aagtgacagg tgtatctcag gcgtgatcag 3051 tgtctgtcgg tttaggaaga ggattagtag tgagtcctca gaatagtgtg 3101 attaaaggtg tagttgggac atctaaatca cgactaatga agatgaaagg 3151 agcatcatct tcatcagtga tgcgcggtcg gaagtagggt cgttttaatt 3201 gcttggcggg tcaggtcatg ggtttgccgt atggtaaacc taaccctgtg 3251 tatgttagta cgggtgtaaa tacgagatta ctatacgaac atggtaattt 3301 ccccc