Sequence of DPV Tomato rugose yellow leaf curl virus
Tomato rugose yellow leaf curl virus isolate U1 clone 3 segment DNA_B, complete sequence.
ACC No: JN381814
Dated: 2012-06-05 | Length: 2620 | CRC: 1112439150
ID JN381814; SV 1; circular; genomic DNA; STD; VRL; 2620 BP.
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AC JN381814;
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DT 21-MAR-2012 (Rel. 112, Created)
DT 05-JUN-2012 (Rel. 113, Last updated, Version 2)
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DE Tomato rugose yellow leaf curl virus isolate U1 clone 3 segment DNA_B,
DE complete sequence.
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KW .
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OS Tomato rugose yellow leaf curl virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2620
RX PUBMED; 22383056.
RA Marquez-Martin B., Maeso D., Martinez-Ayala A., Bernal R.,
RA Teresa Federici M., Vincelli P., Navas-Castillo J., Moriones E.;
RT "Diverse population of a new bipartite begomovirus infecting tomato crops
RT in Uruguay";
RL Arch. Virol. 157(6):1137-1142(2012).
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RN [2]
RP 1-2620
RA Marquez-Martin B., Maeso D., Martinez-Ayala A., Bernal R., Federici M.T.,
RA Vincelli P., Navas-Castillo J., Moriones E.;
RT ;
RL Submitted (20-JUL-2011) to the INSDC.
RL Virology, Inst. Hortofruticultura Subtropical y Mediterranea 'La Mayora'
RL (IHSM-CSIC), Algarrobo Costa s/n., Algarrobo Costa, Malaga 29760, Spain
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FH Key Location/Qualifiers
FH
FT source 1. .2620
FT /organism="Tomato rugose yellow leaf curl virus"
FT /segment="DNA_B"
FT /host="tomato"
FT /isolate="U1"
FT /mol_type="genomic DNA"
FT /country="Uruguay:Salto Grande"
FT /collection_date="2009"
FT /identified_by="B. Marquez-Martin"
FT /clone="3"
FT /db_xref="taxon:1162280"
FT gene 490. .1260
FT /gene="BV1"
FT CDS 490. .1260
FT /codon_start=1
FT /gene="BV1"
FT /product="NSP"
FT /db_xref="GOA:H8ZPL8"
FT /db_xref="UniProtKB/TrEMBL:H8ZPL8"
FT /protein_id="AFD62663.1"
FT /translation="MYTTRYRRGRFSTQGRVYSRYPLSKRSYYVKRTECKRRSSKVTHA
FT DEDKKMSVQRLHENQFGAGFAMAHNTAMSTYITFPTLGITEPNRSRSYIKLKRLRYKGT
FT VKIERVHVDVNMDVAAPKIEGVFSLVVVVDRKPHLNETGSLHSFDEIFGARINSHGNLA
FT IAPVFKDRYYIRHVLKRVLSVEKDSMMVDLEGSMSLSNRRFNCWSTFKDLDRDSCNGVY
FT ANISKNALLVYYYWMSDNASNASTFVSYDLDYVG"
FT gene complement(1365. .2246)
FT /gene="BC1"
FT CDS complement(1365. .2246)
FT /codon_start=1
FT /gene="BC1"
FT /product="MP"
FT /db_xref="GOA:H8ZPM8"
FT /db_xref="UniProtKB/TrEMBL:H8ZPM8"
FT /protein_id="AFD62664.1"
FT /translation="MESQLVHPPNAFNYIESQRDEYQLSHDQTEIKLQFPSTTSQLSAR
FT LSRSCMKIDHSVIEYRQQVPINATGTVVVELHDTRITHNESLQASWTFPIRCSIDLHYF
FT SSSFFSLKDPIPWKLYYRVCDTNVHQGTHFAKIKGKLRLSTAKHSVDIPFRAPTVKILS
FT KQFTEKDIDFSHVGYGRWERKLIRSASTTRYGLPGPIEIRPGESWATRSSIGHTQSDAE
FT SDAGDAIHPYRHLNRLGTTILDPGESASIVGAHKTQSNITMSITQLNDLVRSTVQECIN
FT SNCTPSQPKSLK"
XX
SQ Sequence 2620 BP; 691 A; 469 C; 642 G; 818 T; 0 other;
jn381814 Length: 2620 05-JUN-2012 Type: N Check: 5942 ..
1 actggatggc cgcccgattt tggtgtccta tgctatggtg gccccacacg
51 ctttggtgga ggagtttaca aaaatgtccc tggtgtcccg agtaagttcc
101 caaaataccc ctggtgtccc gaaaaatagt tgagcgcatt tttgacgtcc
151 gtgaaatgag ctgaatgtac gtttgggttc cgtggactga gtcaacaaga
201 aattcaaatt aaagtggagc tatgtttgtc tagccaatca tttcgcgagt
251 gtgaagcctc tttattcatt acaatagtgc gtggggtata tgtgtcagaa
301 catagttggt cgtcactcca atgtttaatt attgtgttta tattgtacta
351 ttggttatat tacgtggacc atttgaacat gtggcactgt gtctaattat
401 tggacatgac atgctatgac ttgtgtatat ataattggta ttaattgagt
451 tggatatcat gtctagctat atttgttgta tattgaaaca tgtatactac
501 gagatataga cgtggcaggt tctctacaca aggacgagtt tactcgcgct
551 atcccttatc caagcgttct tactatgtga aacggacgga gtgtaagcgt
601 cgctcgagta aggtgactca tgctgatgaa gacaagaaga tgtcagtcca
651 gcggctacat gagaatcagt tcggtgctgg ttttgctatg gctcataata
701 cagcgatgtc cacgtacatc accttcccaa ctcttggtat aaccgaacct
751 aaccgttcaa ggtcatacat caagttgaaa cgcttacgtt acaagggtac
801 tgtaaagatt gagcgtgttc atgttgatgt gaatatggac gttgcagctc
851 caaaaattga aggagtcttt tctttggttg tggtggttga tcgaaagccg
901 catttgaacg aaactgggag tttgcattca ttcgacgaaa tattcggtgc
951 gaggattaat agtcatggta atttagccat agctcctgtg tttaaagatc
1001 gttattacat acgtcatgtg ctaaaacgag tgctatcagt ggagaaggat
1051 agcatgatgg tcgatctgga gggaagcatg tccttatcca accggcgttt
1101 caactgttgg tctacgttta aggatttgga tagggattca tgtaatgggg
1151 tttatgccaa tataagcaaa aacgccctat tagtttatta ttattggatg
1201 tcggataacg cgtcgaatgc gtcgacgttt gtatcatatg atcttgatta
1251 tgtgggttga ataaattgta ttattgagtg tccaatttgt atatgctgtt
1301 ttgtaagtaa ctaaaatttg attaataact acttgtgcat aaatacatgt
1351 taacaacaaa tttattattt caacgatttg ggttgtgagg gagtacagtt
1401 tgagttgata cattcttgga ctgtggaccg gacaaggtcg tttaactggg
1451 ttattgacat ggtgatgttg gactgtgtct tatgagcacc cactattgac
1501 gcagactcgc ctgggtctaa gatggtggtt cctaacctat tgagatgtct
1551 atatgggtgt atcgcgtccc ctgcgtccga ttccgcatca gattgggtat
1601 ggccgatgct gctcctggta gcccaagact ccccgggcct tatttctatt
1651 gggcctggaa gcccatatct tgttgtggat gcggatcgga tcaatttcct
1701 ctcccatcga ccataaccga cgtgtgagaa atcaatgtct ttctctgtga
1751 actgtttgga caatatctta accgtcggtg cccggaaagg gatatcaacg
1801 gagtgtttag ccgtcgatag tctgagtttc cccttgatct tcgcaaagtg
1851 agtcccctga tgaacgttgg tgtcacaaac cctgtaatat agtttccatg
1901 gaattgggtc tttgagcgag aagaatgagg atgagaaata atggagatct
1951 atgctgcacc ggataggaaa tgtccaagac gcttgtaagg attcgttgtg
2001 tgtgatcctc gtgtcatgga gctcgactac cactgtccct gtggcgttta
2051 ttggtacttg ctgcctgtat tctatgacgc tatggtcgat cttcatacag
2101 ctgcgactga gtctggcact gagttgagac gtcgtggacg gaaactgcaa
2151 cttaatctca gtttggtcat gtgataattg atattcatca cgctgagatt
2201 ctatataatt aaaggcgttt ggtggatgca ctaactgaga ttccattggt
2251 aaatctggcc gcgcagcgga aacgtctagg ttaatgaatt gactaagaga
2301 tgatgttagg gctaacgaat tgacgaagag aaaacgctga gaaattgaat
2351 tgagtaagag aaatttctcg gaatcagaac tgaagatgga aaaagttaaa
2401 tgaattgtgt gttgtgttat attgtttatg aatatgagtg tttggctttc
2451 ttaaatagac acatgaactt gaagaatgag gaaatgatga tgaaagtacg
2501 gaggacaccg gctctcgttc tccaaaagtc tcatattatg tggtgtcctg
2551 gtgtcccttt taaaccctct tgaatcctct tgaattctct aggggcaaaa
2601 gcggccatcc atataatatt