Sequence of DPV Tomato rugose yellow leaf curl virus
Tomato rugose yellow leaf curl virus isolate U5 clone 2 segment DNA_A, complete sequence.
ACC No: JN381827
Dated: 2012-06-05 | Length: 2685 | CRC: -841035436
ID JN381827; SV 1; circular; genomic DNA; STD; VRL; 2685 BP.
XX
AC JN381827;
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DT 21-MAR-2012 (Rel. 112, Created)
DT 05-JUN-2012 (Rel. 113, Last updated, Version 2)
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DE Tomato rugose yellow leaf curl virus isolate U5 clone 2 segment DNA_A,
DE complete sequence.
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KW .
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OS Tomato rugose yellow leaf curl virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2685
RX PUBMED; 22383056.
RA Marquez-Martin B., Maeso D., Martinez-Ayala A., Bernal R.,
RA Teresa Federici M., Vincelli P., Navas-Castillo J., Moriones E.;
RT "Diverse population of a new bipartite begomovirus infecting tomato crops
RT in Uruguay";
RL Arch. Virol. 157(6):1137-1142(2012).
XX
RN [2]
RP 1-2685
RA Marquez-Martin B., Maeso D., Martinez-Ayala A., Bernal R., Federici M.T.,
RA Vincelli P., Navas-Castillo J., Moriones E.;
RT ;
RL Submitted (20-JUL-2011) to the INSDC.
RL Virology, Inst. Hortofruticultura Subtropical y Mediterranea 'La Mayora'
RL (IHSM-CSIC), Algarrobo Costa s/n., Algarrobo Costa, Malaga 29760, Spain
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FH Key Location/Qualifiers
FH
FT source 1. .2685
FT /organism="Tomato rugose yellow leaf curl virus"
FT /segment="DNA_A"
FT /host="tomato"
FT /strain="A"
FT /isolate="U5"
FT /mol_type="genomic DNA"
FT /country="Uruguay:Salto Grande"
FT /collection_date="2009"
FT /identified_by="B. Marquez-Martin"
FT /clone="2"
FT /db_xref="taxon:1162280"
FT gene 275. .1021
FT /gene="AV1"
FT CDS 275. .1021
FT /codon_start=1
FT /gene="AV1"
FT /product="CP"
FT /db_xref="GOA:H8ZPQ9"
FT /db_xref="UniProtKB/TrEMBL:H8ZPQ9"
FT /protein_id="AFD62704.1"
FT /translation="MPKRDGSWRSIAGTSKVRRSLNFTPRGGIGPKASAWINRPMYRKP
FT RIYRTYRSPDVPKGCEGPCKVQSYEQRHDIAHTGKVLCISDVTRGSGITHRVGKRFCVK
FT SVYILGKVWMDDNIKLRNHTNNVMFWLVRDRRPYGTPMDFGQVFNLFDNEPSTATVKND
FT LRDRFQVMHKFHTTVTGGQYAAKEQAMVKRFWRVNNHVTYNHQEAAKYENHTENALLLY
FT MACTHASNPVYATLKIRFYFYDSISN"
FT gene complement(1018. .1416)
FT /gene="AC3"
FT CDS complement(1018. .1416)
FT /codon_start=1
FT /gene="AC3"
FT /product="REn"
FT /db_xref="GOA:H8ZPR0"
FT /db_xref="UniProtKB/TrEMBL:H8ZPR0"
FT /protein_id="AFD62705.1"
FT /translation="MDSRTGELITAPQAESGVYIWEITNPLYFKITRVEDPLYTNNRIY
FT HVQIRFNHNLRRALDLHKAFLNFQVWTTSVTASGPIYLNRFRHLVLLYLDQLGVISINN
FT VIRAVRFATDRSYVNAVLEHHSIKFNIY"
FT gene complement(1163. .1552)
FT /gene="AC2"
FT CDS complement(1163. .1552)
FT /codon_start=1
FT /gene="AC2"
FT /product="TrAP"
FT /db_xref="GOA:H8ZPQ4"
FT /db_xref="UniProtKB/TrEMBL:H8ZPQ4"
FT /protein_id="AFD62706.1"
FT /translation="MRDSSSSHLPSIKVAHRAAKRRAIRRRRIDLHCGCSIYVHINCRN
FT NGFTHRGTHHCASSREWRVYLGDNKSPIFQDNQSGGSTLHQQQDLPRPDTVQPQPEESV
FT GSPQGISQLPSLDDFSDSFWADLFK"
FT gene complement(1473. .2543)
FT /gene="AC1"
FT CDS complement(1473. .2543)
FT /codon_start=1
FT /gene="AC1"
FT /product="Rep"
FT /db_xref="GOA:H8ZPR2"
FT /db_xref="UniProtKB/TrEMBL:H8ZPR2"
FT /protein_id="AFD62707.1"
FT /translation="MPRNPNQFRLAAKNIFLTYPQCDIPKDEALQMLQALPWSIVKPTY
FT VRVAREEHSDGYPHLHCLIQLSGKSNIKDARFFDLTHPRRSANFHPNVQAAKDTNAVKN
FT YINKEGDYCESGQYKVSGGTKSNKDDVYHNAVNAASAGEAIQIIRAGDPKTFVVNYHNV
FT KANIERLFQKAPEPWSPPFPLSSFTNVPDEMQEWADDYFGRSSAARPERPISIIVEGDS
FT RTGKTMWARALGSHNYLSGHLDFNSRVYSNEAEYNVIDDVAPHYLKLKHWKELIGAQKD
FT WQSNCKYGKPVQIKGGISAIVLCNPGEGASYKDFLDKEENSALRAWTIRNARFIFLTSP
FT LYQSSTQGSQAQGYST"
FT gene complement(2069. .2464)
FT /gene="AC4"
FT CDS complement(2069. .2464)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4"
FT /db_xref="UniProtKB/TrEMBL:H8ZPR3"
FT /protein_id="AFD62708.1"
FT /translation="MKLFKCFKPFHGQSSNPHTSESQERNTLTDIPISIVSSSYPESLT
FT SRMLDFSTLLTPEGLPIFTQMYRQPKTPTPSRITSTKRVIIVNPDNTKCLGEQNQIKTT
FT YTTTPSMQLVLERLFRSLEPETPRHSL"
XX
SQ Sequence 2685 BP; 647 A; 583 C; 678 G; 777 T; 0 other;
jn381827 Length: 2685 05-JUN-2012 Type: N Check: 8660 ..
1 actggatggc cgcccgattt ttggtgtcct gctttaattt gaacgaggag
51 cgtcttttgg tggccccacg cggtcaagcg tgatttcggc gcaattacgt
101 gtgggtcctg agaatgctcg ctcaaagcta agttattttg aaagacttgg
151 tgggtaagtt tgtaaatttg tataagttga gcccacatgt aagaagtatg
201 tcagtcttgt tgcgagactg tgcatgattg agtggagtgg atactttatg
251 tctatatttg atttgtaatt taaaatgccg aagcgggatg ggtcatggcg
301 ttcgattgcg ggtacgtcta aggttaggcg ctctctcaat ttcacgcccc
351 gtggaggtat tgggcctaag gcctctgcct ggattaatag gcccatgtac
401 aggaagccca ggatttatcg gacttacagg tcgcctgacg ttccaaaagg
451 gtgtgaaggg ccttgtaagg tccagtcata tgagcagcgt catgacatcg
501 cccataccgg taaggtgctg tgtatctccg atgtgacacg cggcagcggc
551 attactcatc gtgtcggtaa gcgtttttgt gtgaagtctg tctatatctt
601 aggtaaggta tggatggacg ataacatcaa gttgaggaac cacacgaaca
651 acgtcatgtt ctggttggtt agagaccgga gaccctatgg cacgcccatg
701 gatttcggac aggtgttcaa tttgttcgat aatgagccta gtaccgccac
751 cgtgaagaac gatctccgag atcgtttcca agtgatgcac aagttccaca
801 ccacggtcac tggtgggcaa tatgctgcca aggagcaggc gatggtgaag
851 cgtttctggc gggtcaacaa ccatgtgacc tataaccacc aagaagccgc
901 taagtacgag aaccacacgg agaatgccct gttattgtat atggcatgta
951 ctcatgcttc taaccctgtg tatgcaaccc ttaagattcg gttctatttt
1001 tacgattcga tatcaaatta ataaatgttg aactttattg aatgatgttc
1051 gagtacagca tttacatacg atctgtctgt tgcgaaacga acagctctaa
1101 ttacattgtt aatggaaata acgcctaact ggtctaagta caacaaaact
1151 aaatgtctaa acctatttaa atagatcggc ccagaagctg tcactgaagt
1201 cgtccagact tggaagttga gaaatgcctt gtggagatcc aacgctctcc
1251 tcaggttgtg gttgaaccgt atctggacgt ggtagatcct gttgttggtg
1301 tagagtggat cctccactct ggttatcttg aaatataggg gatttgttat
1351 ctcccagata tacacgccac tctctgcttg aggcgcagtg atgagttccc
1401 ctgtgcgtga atccattgtt gcggcagtta atgtggacgt atattgagca
1451 cccacagtgt aggtcaatgc gcctacgtcg aatagccctg cgcttggctg
1501 ccctgtgtgc tactttgata gaggggagat gtgaggaaga tgaatctcgc
1551 attgcggatt gtccaggctc ttagtgctga gttttcctct ttgtcgagga
1601 aatctttata actggccccc tctccaggat tgcaaagcac gattgctgat
1651 atccctcctt taatttgaac tggcttaccg tacttgcaat tgctttgcca
1701 gtccttctgg gccccaatta attctttcca gtgctttagc tttagatagt
1751 gcggggcgac gtcatcaatg acgttatact ccgcctcgtt cgagtaaacc
1801 ctagaattga aatctaggtg tccgctcaag taattgtgcg aacctaaagc
1851 acgggcccac atcgtcttcc ccgtcctact atcaccctcg acgatgatac
1901 taataggtcg ttcaggccgc gcagcggaac ttctcccgaa ataatcgtcc
1951 gcccactctt gcatctcgtc gggaacgtta gtgaatgaag agaggggaaa
2001 cggaggagac catggttccg gagccttttg aaaaagacgc tcgatgttag
2051 ctttgacatt atgataattc acaacgaatg tcttggggtc tccggctcta
2101 atgatctgaa tagcctctcc agcactagct gcattgacgg cgttgtggta
2151 tacgtcgtct ttatttgatt ttgttccccc agacactttg tattgtccgg
2201 attcacaata atcaccctct ttgttgatgt aattcttgac ggcgttggtg
2251 tctttggctg cctgtacatt tgggtgaaaa ttggcagacc ttctggggtg
2301 agtaaggtcg aaaaatctag catccttgat gttagacttt ccggatagct
2351 ggatgagaca atggagatgg ggatatccgt cagagtgttc ctctcttgcg
2401 actcggacgt atgtgggttt gacgattgac catggaaggg cttgaagcat
2451 ttgaagagct tcatcctttg gtatatcgca ctgaggatat gtgaggaata
2501 tgtttttggc agcaagccta aattggttag gatttcgtgg catattggta
2551 aatatgttcg aggacaccaa ggatggctct caacttctct cctatttgct
2601 ggtgtcctgg tgtcccattt atactacaag cctctaaaag cctcttgagg
2651 acaccagggg caaaagcggc catccatata atatt