Sequence of DPV Citrus tristeza virus
Citrus tristeza virus isolate 5C p23 gene, complete cds.
ACC No: JN384022
Dated: 2012-11-09 | Length: 633 | CRC: -860632819
ID JN384022; SV 1; linear; genomic RNA; STD; VRL; 633 BP. XX AC JN384022; XX DT 01-JUN-2012 (Rel. 113, Created) DT 09-NOV-2012 (Rel. 114, Last updated, Version 2) XX DE Citrus tristeza virus isolate 5C p23 gene, complete cds. XX KW . XX OS Citrus tristeza virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; OC Closterovirus. XX RN [1] RP 1-633 RX PUBMED; 22305960. RA Licciardello G., Raspagliesi D., Bar-Joseph M., Catara A.; RT "Characterization of isolates of Citrus tristeza virus by sequential RT analyses of enzyme immunoassays and capillary electrophoresis-single-strand RT conformation polymorphisms"; RL J. Virol. Methods 181(2):139-147(2012). XX RN [2] RP 1-633 RA Licciardello G., Raspagliesi D., Bar Joseph M., Catara A.; RT "Sequential ELISA/CE-SSCP: a novel method for rapid characterization of RT naturally spreading citrus tristeza virus isolates"; RL Unpublished. XX RN [3] RP 1-633 RA Licciardello G., Raspagliesi D., Catara A.; RT ; RL Submitted (22-JUL-2011) to the INSDC. RL Parco Scientifico e Tecnologico della Sicilia s.c.p.a., ZI Blocco Palma I, RL Str.le V. Lancia 57, Catania, Catania 95121, Italy XX FH Key Location/Qualifiers FH FT source 1. .633 FT /organism="Citrus tristeza virus" FT /host="Citrus macrophylla" FT /isolate="5C" FT /mol_type="genomic RNA" FT /country="Italy:Sicily" FT /db_xref="taxon:12162" FT CDS 1. .630 FT /codon_start=1 FT /product="p23" FT /protein_id="AEX56592.1" FT /translation="MDDTSGQTFISVNLSDESNTASTEIKAVSSEADRLEFLRKMNPFI FT IDALIRKNSYQGARFRARIIGVCVDCGRKHDKASRTERKCKVNNTQSQNEVAHMLMHDP FT VKYLNKRKARAFSNAEMFAIDLVMHTKERQLAVDLAAEREKTRLARRHPMRSPEETPEH FT YKFGMTAKAMLPDINAVDVGDNEDTSSEYPVSLSVSGGVLREHHFI" XX SQ Sequence 633 BP; 192 A; 125 C; 161 G; 155 T; 0 other; jn384022 Length: 633 09-NOV-2012 Type: N Check: 9378 .. 1 atggacgata ctagcggaca aacttttatt tctgtgaacc tttctgacga 51 gagcaacaca gctagtactg aaatcaaagc cgtaagttcg gaagcggatc 101 gcttggaatt tttacggaaa atgaatccct tcattatcga cgctttgata 151 cggaaaaata gttatcaagg cgctcgcttt cgcgcgagaa taataggagt 201 gtgcgtggat tgtggtagaa aacacgataa ggcatcgagg actgaacgta 251 agtgtaaggt caacaatacg cagtctcaga acgaggtggc gcatatgtta 301 atgcacgatc ccgtaaaata tttaaataaa agaaaagcta gagccttttc 351 taacgcagag atgtttgcga tcgatttggt tatgcacacc aaagaaaggc 401 aattagcggt tgatttggcc gctgaaaggg agaagacgag attggctcgt 451 agacacccga tgcgttctcc ggaagagact ccggaacatt ataaattcgg 501 tatgactgct aaggcaatgt taccggacat caacgctgta gacgttggtg 551 ataacgaaga cacctcgtcg gagtacccag taagtctgag tgtttccggc 601 ggagttctcc gtgaacacca cttcatctga ttg