Sequence of DPV Macroptilium yellow spot virus

Macroptilium yellow spot virus isolate BR:Mac5:10 segment DNA-A, complete sequence.

ACC No: JN419022

Dated: 2012-03-20 | Length: 2658 | CRC: -104096828

                
ID   JN419022; SV 1; circular; genomic DNA; STD; VRL; 2658 BP.
XX
AC   JN419022;
XX
DT   20-MAR-2012 (Rel. 112, Created)
DT   20-MAR-2012 (Rel. 112, Last updated, Version 1)
XX
DE   Macroptilium yellow spot virus isolate BR:Mac5:10 segment DNA-A, complete
DE   sequence.
XX
KW   .
XX
OS   Macroptilium yellow spot virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC   unclassified Begomovirus.
XX
RN   [1]
RP   1-2658
RA   Silva S.J.C., Castillo-Urquiza G.P., Hora B.T.Jr., Assuncao I.P.,
RA   Lima G.S.A., Pio-Ribeiro G., Mizubuti E.S.G., Zerbini F.M.;
RT   "Species diversity, phylogeny and genetic variability of begomovirus
RT   populations infecting leguminous weeds in northeastern Brazil";
RL   Plant Pathol. 0:0-0(2011).
XX
RN   [2]
RP   1-2658
RA   Silva S.J.C., Castillo-Urquiza G.P., Hora B.T.Jr., Assuncao I.P.,
RA   Lima G.S.A., Pio-Ribeiro G., Mizubuti E.S.G., Zerbini F.M.;
RT   ;
RL   Submitted (31-JUL-2011) to the INSDC.
RL   Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n,
RL   Vicosa, Minas Gerais 36570-000, Brazil
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2658
FT                   /organism="Macroptilium yellow spot virus"
FT                   /segment="DNA-A"
FT                   /host="Macroptilium lathyroides"
FT                   /isolate="BR:Mac5:10"
FT                   /mol_type="genomic DNA"
FT                   /country="Brazil"
FT                   /collection_date="05-Aug-2010"
FT                   /db_xref="taxon:1129034"
FT   CDS             202. .957
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /protein_id="AFD54555.1"
FT                   /translation="MVKRDAPWRHMAGTSKVSRNNNYSPRGGGGPKNNRASEWVNRPMY
FT                   RKPRIYRMYRTPDVPRGCEGPCKVQSFEQRHDISHVGKVICMSDVTRGNGITHRVGKRF
FT                   CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV
FT                   KNDLRDRFQVMHRFYAKVTGGQYASNEQAIVRRFWKVNNHVVYNHQEAGKYENHTENAL
FT                   LLYMACTHASNPVYATLKIRIYFYDSITN"
FT   CDS             complement(954. .1352)
FT                   /codon_start=1
FT                   /product="replication-enhancer protein"
FT                   /note="REN"
FT                   /protein_id="AFD54556.1"
FT                   /translation="MDSRTGELITAHQAESGVYIWEISNPLYFKINQVEDPLYTTTRIY
FT                   HVQIRFNHNLRRALALHKAYLNFQIWTISLRASGTTYLVRFKYLVMLYLERIGVISLNN
FT                   VIRAVRFATDKSYVNYVLENHEIKFKFY"
FT   CDS             complement(1099. .1488)
FT                   /codon_start=1
FT                   /product="transactivating protein"
FT                   /note="TRAP"
FT                   /protein_id="AFD54557.1"
FT                   /translation="MRNSSSSTPPSIKIQHTAAKKRAIRRRRIDIDCGCSIYVHINCRG
FT                   HGFTHRGTHHCTSGREWRLYLGDIKSPLFQDQPSGGSTIHDNQNISRPDQVQPQPQESI
FT                   GSPQGISQFPNLDDIPESFWDDIFS"
FT   CDS             complement(1400. .2485)
FT                   /codon_start=1
FT                   /product="replication-associated protein"
FT                   /note="REP"
FT                   /protein_id="AFD54554.1"
FT                   /translation="MPPARRFKIQSKNYFLTYPKCSISKEEALAQLLALDTPTNKKYIR
FT                   VCRELHGNGEPHLHALLQFEGKFTCTNCRFFDLRHPSHSNVCHGKYESCKSSSDAKSYI
FT                   EKDGDYVEWGAFQIDGRSARGGQQTVNDTYAKPLNASSAEEALQIIKEEQPQHFFLQHH
FT                   NLVANAYRIFQMVPEPWTPPFPLSSFINIPEEMKAWADDYFGRSAAARPERPISIIIEG
FT                   DSRTGKTMWARALGSHNYLSGHLDFNSKVYSNDVQYNVIDDIAPQYLKLKHWKELIGAQ
FT                   KDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKSFLDKEENTSLRQWTIHNAQFVFIN
FT                   SPLYQDSTYSGQEESNQEKTN"
FT   CDS             complement(2071. .2328)
FT                   /codon_start=1
FT                   /product="AC4 protein"
FT                   /note="AC4"
FT                   /protein_id="AFD54558.1"
FT                   /translation="MGSLISMLCCNSKVSSHARIADSSTYDIPVIQMFVMENTNHASHH
FT                   PTPNHILRRTEITSNGVLFRSTDDLLEEVNRQLTIHMQSR"
XX
SQ   Sequence 2658 BP; 703 A; 534 C; 605 G; 816 T; 0 other;

jn419022 Length: 2658  20-MAR-2012  Type: N  Check: 778  ..

       1  accggatggc cgcgcgattt tttatgggcc ttttcttttg gactcgttct
      51  tttggaccga gtgtatttga attaaagtca gttattttat ttggtccaat
     101  gaatatgcgt ctgactagct tagatatgca caacttggta cccaagttgg
     151  tggctaacgg gtatatattt taagaataac tgactacttc tttaattcag
     201  aatggttaag cgggatgccc catggcgcca catggcagga acctcaaagg
     251  tttcccgcaa taataactat tctcctcgtg gaggtggagg tccaaaaaac
     301  aatagggcct ctgaatgggt taataggccc atgtacagaa agcccaggat
     351  atatcggatg tacagaaccc ccgatgttcc tagagggtgt gaaggcccat
     401  gtaaggttca gtcctttgaa cagcgtcacg atatatccca tgttggtaag
     451  gttatatgta tgtctgacgt gacaagaggt aatggtatta cccatcgtgt
     501  aggaaaacgt ttttgtgtta agtctgttta tattctaggt aagatatgga
     551  tggacgagaa catcaagttg aagaatcaca cgaacagtgt gatgttttgg
     601  ttggtcagag accgacgacc ctatggcacc ccgatggact ttggacaagt
     651  gttcaacatg tttgacaacg agcccagtac tgctacggtt aagaacgatc
     701  ttcgtgatcg ttttcaagtc atgcatcgat tctatgccaa agtcactggt
     751  ggacagtatg cgagcaacga gcaggcaatt gtcaggcgtt tttggaaggt
     801  caacaatcat gttgtctaca accatcaaga agcagggaaa tacgagaatc
     851  atacggagaa cgctttacta ttgtatatgg catgtactca tgcctctaac
     901  cccgtgtatg caacattaaa aattcggatc tatttttatg attcgataac
     951  caattaataa aatttgaatt ttatttcatg attctccaat acataattta
    1001  catatgattt gtctgttgca aatcgaacag ctcggattac attgttaagc
    1051  gaaataacac ctattcgttc taagtacaac atgactaagt atttaaatct
    1101  aactaaatat gtcgtcccag aagctctcag ggatatcgtc cagatttgga
    1151  aattgagata tgccttgtgg agagccaatg ctctcctgag gttgtggttg
    1201  aacctgatct ggacgtgata tattctggtt gtcgtgtata gtggatcctc
    1251  cacttggttg atcttgaaat aaaggggatt tgatatctcc cagatataga
    1301  cgccactctc tgcctgatgt gcagtgatga gttcccctgt gcgtgaatcc
    1351  atggcctctg cagttgatat ggacgtatat ggagcacccg caatctatgt
    1401  caattcgtct tctcctgatt gctctcttct tggccgctgt atgttgaatc
    1451  ttgatagagg ggggagttga tgaagacgaa ttgcgcattg tgtatcgtcc
    1501  actgtctaag tgatgtgttt tcttctttgt cgaggaatga tttatagctg
    1551  gcgccctcgc caggattgca aagcacaatg catgggattc cacctttaat
    1601  ttgaactggc ttgccgtatt tgcaatttga ttgccagtcc ttttgagcac
    1651  ctatcaattc tttccagtgc tttaacttta gatattgcgg tgcgatgtca
    1701  tctatcacgt tgtactgcac atcatttgaa tagacctttg aattgaaatc
    1751  gaggtgacca ctcaagtaat tatgggaccc caatgcacgt gcccacatgg
    1801  tcttgcccgt tcgagagtca ccctcgatga ttatactaat tggtctctcc
    1851  ggccgcgcag cggcacttct tccgaaatag tcatctgccc aagctttcat
    1901  ctcttctggg atattaatga aagaagagag tggaaatgga ggagtccatg
    1951  gctccggaac catttgaaaa atacgatatg cgttagccac aagattgtga
    2001  tgttggagga agaagtgctg aggttgttcc tcctttatta tttgaagtgc
    2051  ttcttcagca gacgaagcat ttaacggctt tgcatatgta tcgttaactg
    2101  tctgttgacc tcctcgagca gatcgtccgt cgatctgaaa agcaccccat
    2151  tcgacgtaat ctccgtcctt ctcaatatat gatttggcgt cggatgatga
    2201  cttgcatgat tcgtattttc catgacaaac atttgaatga ctgggatgtc
    2251  gtaagtcgaa gaatcggcaa ttcgtgcatg tgaacttacc ttcgaattgc
    2301  agcaaagcat ggagatgagg ctccccattt ccgtgtaatt ctctgcatac
    2351  acggatatat tttttgtttg taggtgtgtc taaggctaga agttgagcaa
    2401  gtgcctcttc tttggaaata gagcacttgg gataagtaag gaaataattt
    2451  ttggactgaa ttttaaaacg tctggccggt ggcatatttg taaataaaga
    2501  gatgtctcca aatggcactc ttgtaattgt gggagtgtct ccaattccgc
    2551  tccgctcaaa cttgctctat ctattggaga ctggagacaa tttatactag
    2601  aaccctcaat agaacttcta atcgtgttcg cacacgtggc ggccatccgt
    2651  ataatatt