Sequence of DPV Beet black scorch virus
Beet black scorch virus isolate Xinjiang variant m163, complete genome.
ACC No: JN635328
Dated: 2012-11-22 | Length: 3644 | CRC: -1149682085
ID JN635328; SV 1; linear; genomic RNA; STD; VRL; 3644 BP. XX AC JN635328; XX DT 07-NOV-2011 (Rel. 110, Created) DT 22-NOV-2012 (Rel. 114, Last updated, Version 2) XX DE Beet black scorch virus isolate Xinjiang variant m163, complete genome. XX KW . XX OS Beet black scorch virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae; OC Necrovirus. XX RN [1] RP 1-3644 RX PUBMED; 22971822. RA Xu J., Wang X., Shi L., Zhou Y., Li D., Han C., Zhang Z., Yu J.; RT "Two distinct sites are essential for virulent infection and support of RT variant satellite RNA replication in spontaneous beet black scorch virus RT variants"; RL J. Gen. Virol. 93(PT 12):2718-2728(2012). XX RN [2] RP 1-3644 RA Xu J., Wang X., Han C., Li D., Yu J.; RT ; RL Submitted (01-SEP-2011) to the INSDC. RL State Key Lab. for Agrobiotech., China Agricultural University, 2 RL YuanMingyuan Western Road, Beijing 100193, China XX FH Key Location/Qualifiers FH FT source 1. .3644 FT /organism="Beet black scorch virus" FT /host="sugar beet" FT /lab_host="Nicotiana benthamiana" FT /isolate="Xinjiang variant m163" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="16-Apr-2009" FT /PCR_primers="fwd_name: bb-421, fwd_seq: FT tgtaatacgactcactatagaagaaacctaaccagtttct, rev_name: bb-412, FT rev_seq: cccgggcacctggaagaccagg" FT /note="variant obtained after passage propagation on N. FT benthamiana in greenhouse" FT /db_xref="taxon:196375" FT CDS 36. .2210 FT /codon_start=1 FT /transl_except=(pos:645. .647,aa:OTHER) FT /product="82K protein" FT /note="RNA polymerase; ORF2; translational readthrough of FT ORF1" FT /protein_id="AER58227.1" FT /translation="MDSIPYVILRILDFIFHSIFFPSLLFIINHNTTILWACACAYGFY FT RAFRLIFKIKVEVHPATRAVFKDMVTRFQRESMFSPDDEVPEGIPIHEDVDLVSDPTHK FT DIKRVRASRRVSYAVRVAHVAKSKVGLLANTKANELVYSRLCRDEMVTHGVRPSHIAHA FT VPLAVAACFIPLDSDFLAASIRNCDEMEERRAVLGPSYGKXGGLLCTSGFTTPTWRGNP FT EGLLVKRGPPLAKPRKLYRFSGFGTHIRYGVHDHSLGNVRRGLVERLFMVETKDGLAPT FT PQPTPGVYAKLSRFHDLVSANLTSTTRLTYEQFLGFYSGRKLERYQQAVESLAIRPIGV FT QDAWLSTFVKAEKLNISAKPDPAPRVIQPRSPRYNVEVGRFLRHAEEHLFDAINRVYGG FT RTVFKGLNADQAGMEMQAMWQEFDNPVGIGMDASRFDQHVSKEALEFEHKIWLSMYRGA FT DRKTLSKLLGMQIHNRGLARCPDGEIRYTVEGCRMSGDINTSSGNCYIMCASVHNYCSQ FT LGVKRFRLANNGDDCMLVVEAKDEARVRQGLIEYYRELGFTMKVEPTVYELEHLEFCQT FT RPVLVDGAYRMVRNLHQGMSKDLHSLHDLGSRKAAEAWVSAVGSGGRVMNDGVPVLKSF FT FMQFPLSSGPKTKSDMSVALQEDWKYKFNRTGCFKNLTPTPQSRYSFWRAFGVLPDEQI FT ALENGFSRLSFDKLDQDTQEEVSLLQFSGA" FT CDS 36. .647 FT /codon_start=1 FT /product="23K protein" FT /note="RNA polymerase; ORF1" FT /protein_id="AER58228.1" FT /translation="MDSIPYVILRILDFIFHSIFFPSLLFIINHNTTILWACACAYGFY FT RAFRLIFKIKVEVHPATRAVFKDMVTRFQRESMFSPDDEVPEGIPIHEDVDLVSDPTHK FT DIKRVRASRRVSYAVRVAHVAKSKVGLLANTKANELVYSRLCRDEMVTHGVRPSHIAHA FT VPLAVAACFIPLDSDFLAASIRNCDEMEERRAVLGPSYGK" FT CDS 2228. .2419 FT /codon_start=1 FT /product="7K protein A" FT /note="ORF3" FT /protein_id="AER58229.1" FT /translation="MEQQRSEQRRERRVRSRSEDRKSMSDVGQSAVNREADVKKDMGPS FT VSMTVVGENVEFTQHFHF" FT CDS 2421. .2618 FT /codon_start=1 FT /product="7K protein B" FT /note="ORF4" FT /protein_id="AER58230.1" FT /translation="MSIIYVVQEKPSGFLVWALVVAIVCIIGLLSYTPPERLNHSYHEN FT NQKTQYITIGGTSTSKVSTN" FT CDS 2434. .2577 FT /codon_start=1 FT /product="5'K protein" FT /note="ORF5" FT /protein_id="AER58231.1" FT /translation="MSYRRSPLGFSCGHWLLQLCALLDSYRTLHLKDLTTLITKTIRRR FT NT" FT CDS 2647. .3345 FT /codon_start=1 FT /product="coat protein" FT /note="virus shell; ORF6" FT /protein_id="AER58232.1" FT /translation="MAPKRNKGGKKSRMSDETVRAPTAGGVIQRTPGIPPRIRSTTIGT FT RVTNTELLAGVNVAAAGAFSVVGAGLFPSNLGWLNGIASNYSKFRWLAIKLIYIPIVPT FT TTAGAMTMALSYDPADATPTSFQQVQQMYNSITAPVWAGFDGATVQLLGERPTTGAVCI FT DVDVNRFGFTWYRYATLAAITALTANDRNLYIPSVCNVATSGGTAATNVGNLMIKYSIE FT LIEPIPAAIN" XX SQ Sequence 3644 BP; 899 A; 867 C; 943 G; 935 T; 0 other; jn635328 Length: 3644 22-NOV-2012 Type: N Check: 9844 .. 1 aagaaaccta accagtttct cgttgatcag cgatcatgga ttcaatcccg 51 tatgtgatcc tgcgcatact cgattttatc ttccactcca tcttctttcc 101 atctttactc tttatcatca accacaacac caccatcctg tgggcatgtg 151 cctgtgccta tgggttctac cgtgcattcc gcctcatctt caagataaag 201 gtggaagtac acccagccac ccgagccgtc ttcaaggata tggtcactcg 251 cttccagcgg gagagtatgt tctcacctga cgacgaagtg ccggagggca 301 tccctatcca cgaggatgtt gaccttgtta gcgaccccac acacaaagat 351 attaagcggg tccgtgctag caggcgagtc tcttatgccg tgagggttgc 401 ccatgtagcc aagtctaagg tgggattgct cgccaatacc aaggcgaatg 451 agctggtgta ctcccgtctt tgccgagacg agatggttac ccacggtgtg 501 cgcccatcgc acattgcaca cgcagtgccg cttgctgtcg cggcctgctt 551 cataccgttg gacagtgatt tccttgcagc ttctattaga aactgcgatg 601 agatggagga gcggagggcc gtactagggc cctcatatgg aaaataggga 651 ggcctactct gcaccagcgg gtttaccacg cctacttggc gtggtaatcc 701 agagggtttg ctggtgaaga gaggaccacc tctggctaaa cctaggaaac 751 tgtaccgttt ttctgggttt gggactcata tacggtacgg agtgcacgat 801 cactcattgg gcaatgttcg gaggggactt gttgagcggc tattcatggt 851 tgaaaccaag gatggcttag ctccaacacc acagcccacc cctggcgtgt 901 acgccaagtt atcccggttc catgaccttg ttagtgccaa cctaacctcg 951 accaccagat taacatacga gcaattcctc ggattttatt ctggtcgcaa 1001 attagagagg taccaacagg ccgtggagtc gttagcaatc cgcccaatag 1051 gggtacagga tgcttggctt agcacgtttg ttaaggctga aaaattaaac 1101 atctcagcca aacccgaccc ggcacctagg gttattcagc ctaggtcgcc 1151 gaggtacaat gtggaagttg gacggttcct cagacacgct gaggaacatc 1201 tgttcgacgc catcaaccgt gtgtatggtg ggcgaacggt attcaagggg 1251 ttgaatgccg atcaggctgg catggagatg caagctatgt ggcaagaatt 1301 cgacaatcct gtgggtattg gtatggatgc ctctcgtttc gaccaacacg 1351 tctctaagga ggcgttggag tttgaacaca aaatctggct atccatgtac 1401 cgtggggctg acaggaaaac attgtcgaag ctgttgggga tgcaaatcca 1451 caaccgcggt cttgccagat gccctgatgg agaaatcagg tacacggttg 1501 aggggtgtcg tatgtctggg gacatcaaca catcttctgg aaactgctat 1551 atcatgtgtg cttcggtgca caattattgc agccagttgg gtgtcaagag 1601 attcaggctt gccaacaatg gtgatgattg catgcttgtc gtcgaagcca 1651 aggatgaagc acgtgtcagg cagggactca tcgagtatta tagggaattg 1701 ggtttcacca tgaaagtgga acctacagtc tatgaactcg agcacttgga 1751 gttttgccag acacgtccag tccttgtcga tggggcatat cgaatggtgc 1801 gcaatcttca ccagggcatg tctaaggatc ttcactcctt gcacgatctt 1851 ggtagtagga aagctgctga agcttgggtt tcagcggttg gtagtggagg 1901 ccgtgtgatg aatgatggag taccagtgct caaatcattc ttcatgcagt 1951 ttcctctatc ctctggacct aaaaccaagt ccgacatgag tgtagcgttg 2001 caggaagatt ggaaatacaa attcaatcgg actgggtgtt tcaagaactt 2051 gacacccact ccacaatccc gctactcatt ttggcgtgca tttggagtgc 2101 taccagatga acagattgcc ctggagaatg ggttttctcg tctcagcttt 2151 gacaagctgg accaggatac ccaggaggag gttagcctcc tccagttctc 2201 tggggcatga aaacctaacc acttttcatg gaacaacagc gtagtgaaca 2251 acgtcgtgag cgtagagtga gaagtagatc ggaggacagg aagtctatgt 2301 ctgatgtagg gcaatctgct gtcaataggg aagcagatgt caagaaagat 2351 atgggtccat cggtttctat gacggtggtg ggggagaacg tagagtttac 2401 acaacatttc cacttctgaa atgagcatca tttatgtcgt acaggagaag 2451 ccctctgggt ttctcgtgtg ggcattggtt gttgcaattg tgtgcattat 2501 tggactctta tcgtacactc cacctgaaag acttaaccac tcttatcacg 2551 aaaacaatca gaagacgcaa tacataacta ttggaggaac atccactagt 2601 aaagtttcca cgaactgaat tttctgcttt ctagtatagt caataaatgg 2651 cacctaagcg caataaagga ggcaagaagt cccgcatgtc cgatgagaca 2701 gtgcgggctc ctactgcagg gggcgttata caacgcacac ctggcattcc 2751 tccccgcatt aggtccacca ctattggtac gcgtgtcact aacactgagt 2801 tgctcgccgg agtgaatgtc gctgcggcgg gagctttctc agttgttggt 2851 gctggtcttt tccccagcaa ccttggttgg ctcaatggga ttgcttccaa 2901 ttatagcaaa tttaggtggc ttgctatcaa gctcatctac atccccattg 2951 ttcctaccac gaccgctggg gcaatgacca tggctttatc gtatgatcct 3001 gctgatgcta caccaactag tttccaacag gtacaacaga tgtataatag 3051 catcacagca cctgtctggg ctggatttga tggagctact gttcagctgc 3101 taggggagag accaacaact ggggctgtgt gcattgatgt agatgtgaat 3151 cggtttggat tcacatggta tagatatgct acgcttgctg ccattaccgc 3201 actcactgca aatgatagga atctctatat tcctagtgtc tgcaatgtgg 3251 ctacgtctgg tggcactgca gccaccaatg ttggcaatct gatgataaag 3301 tacagcattg agctcatcga gccaatacct gctgccatta attagatccc 3351 acatcctggt gtggctaatc cagtgaaaaa tattaggaaa tccttgggat 3401 tcacacccca gggaggattg cttgcatagt gcaggtatgt cgagtcacac 3451 tatgaggtat tggtgctgaa tcctgggaaa caggcttgac aggtttgggt 3501 ggttccagac cgatgtatta cccaagatac tcatggtact ctactagaaa 3551 acactatgcg tgcgcacacg gctggctatg tcctatcata gctgggggcc 3601 ccggagtgcg aaaccctctt atatacctgg tcttccaggt gccc