Sequence of DPV Gremmeniella mitovirus S1

Gremmeniella abietina non-host-specific mitochondrial RNA virus S1 RNA-dependent RNA polymerase gene, complete cds.

ACC No: JN654496

Dated: 2012-08-13 | Length: 2544 | CRC: -1104784714

                
ID   JN654496; SV 1; linear; genomic RNA; STD; VRL; 2544 BP.
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AC   JN654496;
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DT   29-JAN-2012 (Rel. 111, Created)
DT   13-AUG-2012 (Rel. 113, Last updated, Version 2)
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DE   Gremmeniella abietina non-host-specific mitochondrial RNA virus S1
DE   RNA-dependent RNA polymerase gene, complete cds.
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KW   .
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OS   Gremmeniella abietina non-host-specific mitochondrial RNA virus S1
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Narnaviridae;
OC   Mitovirus; unclassified Mitovirus.
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RN   [1]
RP   1-2544
RX   PUBMED; 22862915.
RA   Botella L., Tuomivirta T.T., Vervuurt S., Diez J.J., Hantula J.;
RT   "Occurrence of two different species of mitoviruses in the European race of
RT   Gremmeniella abietina var. abietina, both hosted by the genetically unique
RT   Spanish population";
RL   Fungal Biol 116(8):872-882(2012).
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RN   [2]
RP   1-2544
RA   Tuomivirta T.T., Vervuurt S., Hantula J.;
RT   ;
RL   Submitted (06-SEP-2011) to the INSDC.
RL   Forest Pathology, Finnish Forest Research Institute, Vantaa Research Unit,
RL   Jokiniemenkuja 1, Vantaa FI-01300, Finland
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FH   Key             Location/Qualifiers
FH
FT   source          1. .2544
FT                   /organism="Gremmeniella abietina non-host-specific
FT                   mitochondrial RNA virus S1"
FT                   /host="Gremmeniella abietina type B"
FT                   /mol_type="genomic RNA"
FT                   /country="Finland"
FT                   /db_xref="taxon:1136061"
FT   CDS             280. .2355
FT                   /codon_start=1
FT                   /transl_table=4
FT                   /product="RNA-dependent RNA polymerase"
FT                   /note="RdRp"
FT                   /db_xref="GOA:H2DRZ0"
FT                   /db_xref="InterPro:IPR008686"
FT                   /db_xref="UniProtKB/TrEMBL:H2DRZ0"
FT                   /protein_id="AEY76153.1"
FT                   /translation="MKNNTYIIYKTICNIFLNIKDGSFVIGLILKRIHSLIKNNGTLYT
FT                   VTYLKQARLHVTRFYCGSPLKVNDKNVSLDKSGYPIIFKETKKYINGSLFERKFLFTLI
FT                   NISRTIKPKKNEIIPINLNPITDSFSGSNPILDKRILKQVIKDLNIGLKIKNLELNDLK
FT                   LTTKAGPHGPQTLSSLYTLKRYTKTLVSATCGLLSSEVYSYFKDCYTHVLRNDDEFKPC
FT                   GSRHTSDLRRLSIVKDPECKMRVIAMFDWFSQITLKALSDSLFQALKCIDSDRTYTQDP
FT                   KFHFVPDLKHKLWSIDLTSATDRFPIITQKQILGILTNTCLADDWADIMVSEPCSFQGQ
FT                   SLYYKVGQPMGAHSSWPMFTLSHHILVRYCGILNGLTNFNKYIMLGDDIVINNDKVAKT
FT                   YIRLLRVLGVETSKAKTHVSKHTYEFAKRWIDLRLAEVTGLPVKGIIDNNKNISICFQI
FT                   LFDYINKGNSVNHQNALTFDVAKFLYKIQDFTKPCYGFRKILKIIIPISFFMRLRFGML
FT                   TNEELRNQISLWTSKNQFIIGGSEKLFRDEIKRLFNLVYINILGKSSQMTAEFYHKILE
FT                   FVELEDNFLEDSSHPILLVINNYLEEMVEKSDPSKQMSMTLKDMCDALPLLDIESIMSH
FT                   QRNKILLMNNNTKMAHKFVSMVKSLDYDKPVEVNYNALQGMGNMRSTLQRFQRNYL"
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SQ   Sequence 2544 BP; 954 A; 358 C; 391 G; 841 T; 0 other;

jn654496 Length: 2544  13-AUG-2012  Type: N  Check: 7192  ..

       1  gacgaaggcg gcattatgcc ttttgggcat aatggaggtc agaatgacac
      51  tctaatagac aaaagattaa tcttttgtat attaccagtt ttcacaattt
     101  ggtagtcact gatcctgttg atataataat tttatttgga aggttttatg
     151  gtttaaggaa tctcttggct ttgtacacca agaaacctta aaacttaaaa
     201  ctcatacaga tataattatt attaagacct gagtcaccta aacgccaaat
     251  tgtccacaaa tactatcttt aataaattta tgaaaaataa tacatatata
     301  atttataaaa ctatttgtaa tattttccta aatattaaag atggttcttt
     351  tgttattggt cttatcctta aaaggattca tagtctaatt aaaaacaatg
     401  gaactcttta tactgtaaca taccttaaac aggcaaggtt acatgtaaca
     451  agattctatt gtggttcacc tttaaaagtg aacgataaga atgtatcact
     501  tgataaaagt ggatacccaa ttatctttaa agagactaag aagtatatta
     551  atggaagttt gtttgaacgt aagttcttat ttactttaat taatatatct
     601  agaacaataa aacccaagaa aaatgaaatt ataccaataa atttaaaccc
     651  aattactgat agttttagtg gttctaatcc aatattggat aaaagaatac
     701  ttaaacaagt aattaaagat ttaaacattg gtcttaaaat caaaaatctt
     751  gagttgaatg atctgaagtt aactacaaag gcaggacctc atggaccaca
     801  aactttaagt tcattatata cattaaaaag gtatacaaaa actttagtta
     851  gtgctacatg tggtctgttg tctagtgaag tttactcata cttcaaagat
     901  tgttatactc atgttctccg taatgatgat gaatttaaac catgtggttc
     951  aagacataca tcagatttac gaagactgag tattgttaaa gatccggaat
    1001  gtaaaatgag agtaatagct atgtttgact ggttttcaca aataacattg
    1051  aaagccttat cagattcact atttcaggct cttaaatgta tagattctga
    1101  tagaacatat acacaagacc ctaaatttca ttttgttcct gatcttaaac
    1151  acaaactttg gagtattgat ctaacatcag caaccgatcg gtttccaatt
    1201  ataactcaaa aacaaatatt aggaatatta actaatacat gtttagcaga
    1251  tgattgggct gatataatgg tttctgaacc atgtagtttc caaggtcaat
    1301  cactttatta taaagttggt caaccaatgg gagctcacag ttcatgacct
    1351  atgtttacac tttcacatca tatacttgtt aggtattgtg gaatccttaa
    1401  tggattaaca aactttaata aatatataat gttaggtgac gacattgtta
    1451  ttaataatga caaagtcgca aaaacatata tcagacttct tagagttcta
    1501  ggtgttgaaa catctaaagc aaaaacacat gtgtcaaagc atacatatga
    1551  atttgctaag agatgaattg accttagact tgcagaagta acaggtcttc
    1601  ctgttaaagg tataattgat aataataaaa atatatctat atgttttcaa
    1651  atattatttg attatatcaa taaaggaaat agtgttaacc accaaaatgc
    1701  gttaaccttt gatgttgcaa aattcctgta taaaattcaa gatttcacaa
    1751  aaccatgtta tggttttagg aaaattttga agataattat accaatatcc
    1801  ttctttatga gattgagatt tggaatgtta acaaatgaag aattgagaaa
    1851  tcaaatttca ttgtgaactt ctaaaaatca attcattata ggaggatctg
    1901  aaaagttatt ccgcgatgaa ataaagcggc tctttaactt ggtatatatt
    1951  aatatactag gaaaatcttc acagatgaca gcagaattct atcataaaat
    2001  ccttgagttc gttgaactcg aagataattt tttagaagac tcatcacatc
    2051  caattctttt agttattaac aattatcttg aggaaatggt tgaaaaatca
    2101  gatccttcaa aacaaatgtc aatgacatta aaggatatgt gtgatgcttt
    2151  acctttactt gatatcgaaa gtattatgtc acatcaacgg aacaaaattc
    2201  tgttaatgaa caataatacc aagatggcac ataaatttgt ttcaatggtt
    2251  aaatcattag attatgataa acctgttgaa gtaaattata atgcattaca
    2301  aggtatgggt aatatgcggt caacattaca gagattccaa aggaattatc
    2351  tataattaag gaagtattca accgttgaag gttaaagacg acttaacaat
    2401  aaataactac ttattatgca tgtacaaaca taataggata agatgtaatt
    2451  attgtgaatg tctactgcaa ctatagacgg cggatgaaat gttaaagttt
    2501  catattcttt agaaagaatc attatgccga aaggcataat gccc