Sequence of DPV Gremmeniella mitovirus S1
Gremmeniella abietina non-host-specific mitochondrial RNA virus S1 RNA-dependent RNA polymerase gene, complete cds.
ACC No: JN654496
Dated: 2012-08-13 | Length: 2544 | CRC: -1104784714
ID JN654496; SV 1; linear; genomic RNA; STD; VRL; 2544 BP. XX AC JN654496; XX DT 29-JAN-2012 (Rel. 111, Created) DT 13-AUG-2012 (Rel. 113, Last updated, Version 2) XX DE Gremmeniella abietina non-host-specific mitochondrial RNA virus S1 DE RNA-dependent RNA polymerase gene, complete cds. XX KW . XX OS Gremmeniella abietina non-host-specific mitochondrial RNA virus S1 OC Viruses; ssRNA positive-strand viruses, no DNA stage; Narnaviridae; OC Mitovirus; unclassified Mitovirus. XX RN [1] RP 1-2544 RX PUBMED; 22862915. RA Botella L., Tuomivirta T.T., Vervuurt S., Diez J.J., Hantula J.; RT "Occurrence of two different species of mitoviruses in the European race of RT Gremmeniella abietina var. abietina, both hosted by the genetically unique RT Spanish population"; RL Fungal Biol 116(8):872-882(2012). XX RN [2] RP 1-2544 RA Tuomivirta T.T., Vervuurt S., Hantula J.; RT ; RL Submitted (06-SEP-2011) to the INSDC. RL Forest Pathology, Finnish Forest Research Institute, Vantaa Research Unit, RL Jokiniemenkuja 1, Vantaa FI-01300, Finland XX FH Key Location/Qualifiers FH FT source 1. .2544 FT /organism="Gremmeniella abietina non-host-specific FT mitochondrial RNA virus S1" FT /host="Gremmeniella abietina type B" FT /mol_type="genomic RNA" FT /country="Finland" FT /db_xref="taxon:1136061" FT CDS 280. .2355 FT /codon_start=1 FT /transl_table=4 FT /product="RNA-dependent RNA polymerase" FT /note="RdRp" FT /db_xref="GOA:H2DRZ0" FT /db_xref="InterPro:IPR008686" FT /db_xref="UniProtKB/TrEMBL:H2DRZ0" FT /protein_id="AEY76153.1" FT /translation="MKNNTYIIYKTICNIFLNIKDGSFVIGLILKRIHSLIKNNGTLYT FT VTYLKQARLHVTRFYCGSPLKVNDKNVSLDKSGYPIIFKETKKYINGSLFERKFLFTLI FT NISRTIKPKKNEIIPINLNPITDSFSGSNPILDKRILKQVIKDLNIGLKIKNLELNDLK FT LTTKAGPHGPQTLSSLYTLKRYTKTLVSATCGLLSSEVYSYFKDCYTHVLRNDDEFKPC FT GSRHTSDLRRLSIVKDPECKMRVIAMFDWFSQITLKALSDSLFQALKCIDSDRTYTQDP FT KFHFVPDLKHKLWSIDLTSATDRFPIITQKQILGILTNTCLADDWADIMVSEPCSFQGQ FT SLYYKVGQPMGAHSSWPMFTLSHHILVRYCGILNGLTNFNKYIMLGDDIVINNDKVAKT FT YIRLLRVLGVETSKAKTHVSKHTYEFAKRWIDLRLAEVTGLPVKGIIDNNKNISICFQI FT LFDYINKGNSVNHQNALTFDVAKFLYKIQDFTKPCYGFRKILKIIIPISFFMRLRFGML FT TNEELRNQISLWTSKNQFIIGGSEKLFRDEIKRLFNLVYINILGKSSQMTAEFYHKILE FT FVELEDNFLEDSSHPILLVINNYLEEMVEKSDPSKQMSMTLKDMCDALPLLDIESIMSH FT QRNKILLMNNNTKMAHKFVSMVKSLDYDKPVEVNYNALQGMGNMRSTLQRFQRNYL" XX SQ Sequence 2544 BP; 954 A; 358 C; 391 G; 841 T; 0 other; jn654496 Length: 2544 13-AUG-2012 Type: N Check: 7192 .. 1 gacgaaggcg gcattatgcc ttttgggcat aatggaggtc agaatgacac 51 tctaatagac aaaagattaa tcttttgtat attaccagtt ttcacaattt 101 ggtagtcact gatcctgttg atataataat tttatttgga aggttttatg 151 gtttaaggaa tctcttggct ttgtacacca agaaacctta aaacttaaaa 201 ctcatacaga tataattatt attaagacct gagtcaccta aacgccaaat 251 tgtccacaaa tactatcttt aataaattta tgaaaaataa tacatatata 301 atttataaaa ctatttgtaa tattttccta aatattaaag atggttcttt 351 tgttattggt cttatcctta aaaggattca tagtctaatt aaaaacaatg 401 gaactcttta tactgtaaca taccttaaac aggcaaggtt acatgtaaca 451 agattctatt gtggttcacc tttaaaagtg aacgataaga atgtatcact 501 tgataaaagt ggatacccaa ttatctttaa agagactaag aagtatatta 551 atggaagttt gtttgaacgt aagttcttat ttactttaat taatatatct 601 agaacaataa aacccaagaa aaatgaaatt ataccaataa atttaaaccc 651 aattactgat agttttagtg gttctaatcc aatattggat aaaagaatac 701 ttaaacaagt aattaaagat ttaaacattg gtcttaaaat caaaaatctt 751 gagttgaatg atctgaagtt aactacaaag gcaggacctc atggaccaca 801 aactttaagt tcattatata cattaaaaag gtatacaaaa actttagtta 851 gtgctacatg tggtctgttg tctagtgaag tttactcata cttcaaagat 901 tgttatactc atgttctccg taatgatgat gaatttaaac catgtggttc 951 aagacataca tcagatttac gaagactgag tattgttaaa gatccggaat 1001 gtaaaatgag agtaatagct atgtttgact ggttttcaca aataacattg 1051 aaagccttat cagattcact atttcaggct cttaaatgta tagattctga 1101 tagaacatat acacaagacc ctaaatttca ttttgttcct gatcttaaac 1151 acaaactttg gagtattgat ctaacatcag caaccgatcg gtttccaatt 1201 ataactcaaa aacaaatatt aggaatatta actaatacat gtttagcaga 1251 tgattgggct gatataatgg tttctgaacc atgtagtttc caaggtcaat 1301 cactttatta taaagttggt caaccaatgg gagctcacag ttcatgacct 1351 atgtttacac tttcacatca tatacttgtt aggtattgtg gaatccttaa 1401 tggattaaca aactttaata aatatataat gttaggtgac gacattgtta 1451 ttaataatga caaagtcgca aaaacatata tcagacttct tagagttcta 1501 ggtgttgaaa catctaaagc aaaaacacat gtgtcaaagc atacatatga 1551 atttgctaag agatgaattg accttagact tgcagaagta acaggtcttc 1601 ctgttaaagg tataattgat aataataaaa atatatctat atgttttcaa 1651 atattatttg attatatcaa taaaggaaat agtgttaacc accaaaatgc 1701 gttaaccttt gatgttgcaa aattcctgta taaaattcaa gatttcacaa 1751 aaccatgtta tggttttagg aaaattttga agataattat accaatatcc 1801 ttctttatga gattgagatt tggaatgtta acaaatgaag aattgagaaa 1851 tcaaatttca ttgtgaactt ctaaaaatca attcattata ggaggatctg 1901 aaaagttatt ccgcgatgaa ataaagcggc tctttaactt ggtatatatt 1951 aatatactag gaaaatcttc acagatgaca gcagaattct atcataaaat 2001 ccttgagttc gttgaactcg aagataattt tttagaagac tcatcacatc 2051 caattctttt agttattaac aattatcttg aggaaatggt tgaaaaatca 2101 gatccttcaa aacaaatgtc aatgacatta aaggatatgt gtgatgcttt 2151 acctttactt gatatcgaaa gtattatgtc acatcaacgg aacaaaattc 2201 tgttaatgaa caataatacc aagatggcac ataaatttgt ttcaatggtt 2251 aaatcattag attatgataa acctgttgaa gtaaattata atgcattaca 2301 aggtatgggt aatatgcggt caacattaca gagattccaa aggaattatc 2351 tataattaag gaagtattca accgttgaag gttaaagacg acttaacaat 2401 aaataactac ttattatgca tgtacaaaca taataggata agatgtaatt 2451 attgtgaatg tctactgcaa ctatagacgg cggatgaaat gttaaagttt 2501 catattcttt agaaagaatc attatgccga aaggcataat gccc