Sequence of DPV Watermelon chlorotic stunt virus
Watermelon chlorotic stunt virus isolate PA coat protein (AV1) and AC5 protein (AC5) genes, partial cds; and replication activator protein (AC3), transcription activator protein (AC2), replicase (AC1), and AC4 protein (AC4) genes, complete cds.
ACC No: JN673223
Dated: 2012-01-02 | Length: 2018 | CRC: 1375884518
ID JN673223; SV 1; linear; genomic DNA; STD; VRL; 2018 BP.
XX
AC JN673223;
XX
DT 02-JAN-2012 (Rel. 111, Created)
DT 02-JAN-2012 (Rel. 111, Last updated, Version 1)
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DE Watermelon chlorotic stunt virus isolate PA coat protein (AV1) and AC5
DE protein (AC5) genes, partial cds; and replication activator protein (AC3),
DE transcription activator protein (AC2), replicase (AC1), and AC4 protein
DE (AC4) genes, complete cds.
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KW .
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OS Watermelon chlorotic stunt virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2018
RA Ali-Shtayeh M.S., Jamous R.M., Hussein E.Y., Mallah O.B., Abu-Zaitoun S.Y.;
RT "First Report of Watermelon chlorotic stunt virus in Watermelon in the
RT Palestinian Authority";
RL Plant Dis. 96(1):149-149(2012).
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RN [2]
RP 1-2018
RA Ali-Shtayeh M.S., Jamous R.M.;
RT ;
RL Submitted (11-SEP-2011) to the INSDC.
RL Biodiversity and Biotechnology Research Unit, Biodiversity & Environmental
RL Research Center, BERC, Al-Masjed Str, Nablus 970, Palestinian Authority
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FH Key Location/Qualifiers
FH
FT source 1. .2018
FT /organism="Watermelon chlorotic stunt virus"
FT /segment="DNA A"
FT /host="watermelon"
FT /isolate="PA"
FT /mol_type="genomic DNA"
FT /country="West Bank:Palestinian Authority"
FT /collection_date="Jul-2010"
FT /db_xref="taxon:35341"
FT gene <1. .413
FT /gene="AV1"
FT CDS <1. .413
FT /codon_start=3
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="AEX00104.1"
FT /translation="MDENVKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDNEPST
FT ATVKNDLRDRFQVMRKFHATVVGGPSGMKEQALVKRFYRVYNHVVYNHQETAKYENHTE
FT NAMLLYMACTHASNPVYATLKIRIYFYDSVTN"
FT gene complement(<1. .308)
FT /gene="AC5"
FT CDS complement(<1. .308)
FT /codon_start=1
FT /gene="AC5"
FT /product="AC5 protein"
FT /protein_id="AEX00105.1"
FT /translation="MILILRSLLVVVYHMIVHTIEAFYQRLLLHPRGATDHGGMKLSHN
FT LETIAKIVLNCRSAGLVVEHIKNLSEVHWTGPIWTTITNKKEHDLIRMILFFYVLIHP"
FT gene complement(410. .814)
FT /gene="AC3"
FT CDS complement(410. .814)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication activator protein"
FT /protein_id="AEX00107.1"
FT /translation="MDSRTGEYITADQAWNGVFTWKINNPLYFTIIDHHQRPFLCRHDI
FT IHMQIRFNHNLRRALGIHKAFLNFRIWTTLRPQTGRFLRVFRTQVLKYLDMLGVISLNL
FT VVRAVSHVLENVLVGTIDVQENHVIKFDLY"
FT gene complement(555. .962)
FT /gene="AC2"
FT CDS complement(555. .962)
FT /codon_start=1
FT /gene="AC2"
FT /product="transcription activator protein"
FT /protein_id="AEX00106.1"
FT /translation="MPNSSPSQNLSSQPSIKIRHRLAKKKTIRRRRIDLKCGCSYYLHI
FT SCQNHGFSHRGIHYCGSSMEWRVYLEDKQPPIFHDNRSPPTPLSLPSRHNTHANTIQPQ
FT PSEGVGDSQSFPELPNLDDFTASDWSFLKGI"
FT gene complement(862. .1947)
FT /gene="AC1"
FT CDS complement(862. .1947)
FT /codon_start=1
FT /gene="AC1"
FT /product="replicase"
FT /protein_id="AEX00108.1"
FT /translation="MRPPRFRIQAKNIFLTYPRCSLSKEDLLSFLVGLSLPSNLKYVKV
FT CRELHQNGEPHLHVLLQFAGKITITDNRLFDHVHPSRSACFHPNIQSAKSSTDVKSYLD
FT KDGDTVEWGKFQIDGRSARGGQQTANDAYATALNMSNKGEAMSVIKELAPKDFVLHYHN
FT IKPNLDRIFEDPVAPFVCPFPMSSFTLLPPELVDWASTNVCSSAARPWRPKSIVVEGES
FT RTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQ
FT SNTKYGKPIQIKGGIPTIFLCNPGPSSSYKEFLEEEKNYALKEWADKNAEFVSLTEPLF
FT STEHQDQTQTRQKEDDSTTTH"
FT gene complement(1650. .1793)
FT /gene="AC4"
FT CDS complement(1650. .1793)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /protein_id="AEX00109.1"
FT /translation="MGNLISMCSCSSPERSPSQTIASSIMYTQAVAPVSTPTYKALSPV
FT QT"
XX
SQ Sequence 2018 BP; 516 A; 447 C; 497 G; 558 T; 0 other;
jn673223 Length: 2018 02-JAN-2012 Type: N Check: 2994 ..
1 ggatggatga gaacgtaaaa aaacaaaatc atacgaatca ggtcatgttc
51 tttcttgttc gtgatcgtcg tccatatggg tccagtccaa tggacttcgg
101 acaggttttt aatatgttcg acaacgagcc cagcactgcg acagttaaga
151 acgatcttcg cgatcgtttc caagttatgc gaaagtttca tgccaccgtg
201 gtcggtggcc cctctgggat gaaggagcag gcgctggtaa aacgcttcta
251 tcgtgtgtac aatcatgtgg tatacaacca ccaagagact gcgaagtatg
301 agaatcatac tgagaatgcg atgttattgt atatggcgtg tacacacgca
351 tcgaatcctg tgtatgcaac attgaaaatt cgtatatact tttatgactc
401 agttacgaat taataaagat cgaattttat tacgtgattt tcttgtacat
451 cgattgtccc aacaaggaca ttttccaata catgacttac ggccctaaca
501 accaaattta gactaattac acctaacata tcgaggtatt ttagaacctg
551 cgttctaaat acccttaaga aacgaccagt ctgaggccgt aaagtcgtcc
601 agattcggaa gttcaggaaa gctttgtgaa tccccaacgc cctccgaagg
651 ttgtggttga atcgtatttg catgtgtatt atgtcgtgac ggcaaagaaa
701 ggggcgttgg tggtgatcta ttatcgtgaa atataggggg ttgtttatct
751 tccaggtaaa cacgccattc catgcttgat ccgcagtaat gtattccccg
801 gtgcgagaat ccatgattct ggcacgagat atgcaggtaa tatgagcaac
851 cgcactttag atcaatgcgt cgtcgtcgaa tcgtcttctt tttggcgagt
901 ctgtgtctga tcttgatgct cggttgagaa gagaggttct gtgagggaga
951 cgaattcggc attcttgtcc gcccactctt ttagtgcata gttcttctcc
1001 tcctctagaa actctttata cgaagaagat gggcccggat tgcaaaggaa
1051 gatagtggga attccgcctt taatttgaat cggctttccg tatttcgtgt
1101 tgctttgcca atcacgctgg gcccccatga actctttgaa gtgctttaga
1151 taatgcgggt cgacgtcatc aatgacgttg taccacgcat cgttgctgta
1201 tatctttgga ctcaggtcaa ggtgaccaca caggtaatta tgtggtccta
1251 atgatcgggc ccacatcgtc tttcccgtac gactctcacc ctctaccacg
1301 atactcttag gtctccacgg ccgcgcagcg gaagagcaaa cgttcgttga
1351 tgcccaatca acgagctcag gcggtagcaa cgtgaaagac gacatcggaa
1401 aaggacaaac gaaaggagcc acagggtctt cgaagattcg atccaaattt
1451 ggcttgatat tgtggtaatg aaggacgaag tccttcggtg cgagctcctt
1501 gatcacagac atagcctccc ctttattact catgttaagc gccgtggcgt
1551 aggcgtcgtt agctgtctgt tgtccacccc ttgcagatcg accgtcgatt
1601 tgaaacttgc cccactcgac ggtgtcgccg tccttgtcca ggtaagactt
1651 cacgtctgta ctggacttag cgctttgtat gttggggtgg aaacaggcgc
1701 tacggcttgg gtgtacatga tcgaagaggc gattgtctgt gatggtgatc
1751 tttccggcga actgcaggag cacatggaga tgaggttccc cattctggtg
1801 cagttctctg cacaccttga cgtattttag gttcgacgga agagagaggc
1851 cgactaaaaa ggaaagtagg tcttctttgg atagagagca cctgggatat
1901 gtgaggaaaa tgtttttcgc ttgtattcta aaacggggag gcctcatgtt
1951 gaccagtcaa ttggagacac cccccagatc actaacccct gtatattgga
2001 gactggagac aatatata