Sequence of DPV Ageratum yellow vein virus
Ageratum yellow vein virus isolate AFSP3a segment A, complete sequence.
ACC No: JN809815
Dated: 2012-01-16 | Length: 2762 | CRC: 2103886050
ID JN809815; SV 1; circular; genomic DNA; STD; VRL; 2762 BP. XX AC JN809815; XX DT 16-JAN-2012 (Rel. 111, Created) DT 16-JAN-2012 (Rel. 111, Last updated, Version 1) XX DE Ageratum yellow vein virus isolate AFSP3a segment A, complete sequence. XX KW . XX OS Ageratum yellow vein virus OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2762 RA Shih S.L., Tsai W.S., Lee L.M., Kenyon L.; RT "First report and molecular characterization of begomoviruses infecting RT Sauropus androgynus in Thailand"; RL Unpublished. XX RN [2] RP 1-2762 RA Shih S.L., Tsai W.S., Lee L.M., Kenyon L.; RT ; RL Submitted (03-OCT-2011) to the INSDC. RL Virology, AVRDC-The World Vegetable Center, PO Box 42, Shanhua, Republic of RL China XX FH Key Location/Qualifiers FH FT source 1. .2762 FT /organism="Ageratum yellow vein virus" FT /segment="A" FT /host="Sauropus androgynus" FT /isolate="AFSP3a" FT /mol_type="genomic DNA" FT /country="Thailand:Kamphaengsaen" FT /collection_date="2010" FT /db_xref="taxon:44560" FT gene 135. .485 FT /gene="V2" FT CDS 135. .485 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /protein_id="AEX37925.1" FT /translation="MWDPLVNEFPETVHGLRCMLAVKYCQLIEQTYAPDTVGYDLIRDL FT ISVIRARNYVEASRRYSHFNSRLEGTTSSELRHPRDEPCCCPHCPRHQQKKDMDQQAHV FT SQAQILQSVQKP" FT gene 295. .1068 FT /gene="V1" FT CDS 295. .1068 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /protein_id="AEX37922.1" FT /translation="MSKRPADIVISTPASKVRRRLNFDTPVMSRAAAPTVLVTNKKRIW FT TNRPMYRKPRFYRVYKSPDVPKGCEGPCKVQSYEQRHDISHVGKVLCVSDVTRGSGLTH FT RVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVIFYLVRDRRPYGSAMDFGQVFNMYDNE FT PSTATIKNDLRDRYQVLRKFTATVTGGQYASKEQALVRKFMKINNYVVYNHQEAAKYDN FT HTENALLLYMACTHASNPVYATLKIRIYFYDSVQN" FT gene complement(1065. .1469) FT /gene="C3" FT CDS complement(1065. .1469) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancement protein" FT /protein_id="AEX37924.1" FT /translation="MDSRTGELLTATQCESGVYIWTIKNPLYFKITKHHERPFNTNHDI FT ITIQIQFNHNLRKALGIHQCFLNFQIWTRLQPQTWRFLRVFRVQCMKYLDNMGVISINN FT VIRACDHVLWDVLEKTEYVTQSNIIKFNLY" FT gene complement(1210. .1617) FT /gene="C2" FT CDS complement(1210. .1617) FT /codon_start=1 FT /gene="C2" FT /product="transcriptional activation protein" FT /protein_id="AEX37923.1" FT /translation="MRNSSPSRSHCTQVPIKVQHRIAKRRPVRRRRVDLTCGCSYYFGI FT DCANHGFSHRGITHCNSMREWRVYLDDQKSPIFQDNQAPRETIQHQPRHHNDPNTVQPQ FT PEESVGNTPVFSELPDLDSLTTSDLAFLKSI" FT gene complement(1517. .2605) FT /gene="C1" FT CDS complement(1517. .2605) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /protein_id="AEX37921.1" FT /translation="MPQPKKFLINAKNYFLTYPQCSLTKEEALSQISALSTPTNKLFIR FT ICRELHEDGSPHLHVLIQFEGKFKCQNNRFFDLTSPSRSAHFHPNIQGAKSSTDVKAYM FT EKDGDVLDHGIFQIDGRSARGGCQSANDAYAEAINSGSKAAALNILKEKAPKDFVLQFH FT NLNSNLDRIFAPPLEVFVCPFLSSSFDQVPEELEEWVSENVRDAAARPWRPKSIVVEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNSALKDWAIKNAEFITLTEPL FT YSSTNQSATQNSQEETSSQAES" FT gene complement(2155. .2577) FT /gene="C4" FT CDS complement(2155. .2577) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /protein_id="AEX37926.1" FT /translation="MRRIISSLIHSAPLLKKRHFPKSQPYQPRLINYSYVFAGNYTKMG FT LLTCMSSSSSKANSSAKTTDSSISPPQAGQHISIRTFRELKAQQMLKHTWKKTETCLIM FT EFSKSMEDQLEEVANLQTTHMPRQSIQGPKQRPSIY" XX SQ Sequence 2762 BP; 736 A; 556 C; 595 G; 875 T; 0 other; jn809815 Length: 2762 16-JAN-2012 Type: N Check: 2090 .. 1 accggatggc cgcgattttt tttaaagtgg tccccaccac taacaaatgt 51 cccccactaa aaacgctctc tcaaagttta attgttttgt ggtcccttat 101 ttaaacttgc tcagcaagta gttcactccg cactatgtgg gatccattag 151 taaacgagtt tcccgaaact gttcacggtc ttaggtgtat gcttgccgta 201 aaatattgtc agttaattga acagacatac gctccagata cggttggtta 251 cgatcttata cgagatttaa tttcagtaat tcgtgctcgc aattatgtcg 301 aagcgtcccg ccgatatagt catttcaact cccgcctcga aggtacgacg 351 tcgtctgaac ttcgacaccc ccgtgatgag ccgtgctgct gcccccactg 401 tcctcgtcac caacaaaaaa aggatatgga ccaacaggcc catgtatcgc 451 aagcccagat tctacagagt gtacaaaagc cctgatgtgc ccaaaggttg 501 tgaaggtcca tgtaaggtcc aatcgtatga acagaggcac gacatatccc 551 atgttggtaa agtattatgt gttagtgatg tcactcgtgg tagtgggctt 601 acccatcgtg ttggtaagag attctgtgtg aagtccgttt atgtattggg 651 taagatatgg atggatgaaa atatcaaaac caagaaccat acgaacactg 701 tgatttttta tcttgttcgt gatagaaggc cctatggttc tgctatggat 751 tttggtcagg tgtttaacat gtatgataat gagcccagta ctgctactat 801 caagaatgat cttcgagatc gttatcaagt gttaaggaaa ttcactgcaa 851 cagttacagg tggtcaatat gcttctaagg agcaggcgtt ggttaggaaa 901 tttatgaaga ttaataatta tgtagtttat aatcatcaag aggctgctaa 951 gtatgacaat catactgaga atgccttgtt attgtatatg gcttgtaccc 1001 atgccagtaa tccagtgtat gctactttga agatcagaat ctatttttat 1051 gattctgttc agaattaata aagattgaat tttattatat tagattgtgt 1101 tacatattct gttttttcca atacatccca taatacatga tcacatgctc 1151 taattacatt gttaatacta attacaccca tattatctaa atatttcata 1201 cattgaaccc taaatactct taagaaacgc caagtctgag gttgtaagcg 1251 agtccagatc tggaagttca gaaaacactg gtgtattccc aacgctttcc 1301 tcaggttgtg gttgaactgt atttggatcg ttatgatgtc gtggttggtg 1351 ttgaatggtc tctcgtggtg cttggttatc ttgaaatata ggggattttt 1401 gatcgtccag atatacacgc cactctcgca ttgagttgca gtgagtaatt 1451 cccctgtgcg agaatccatg attggcgcag tctatgccga agtagtatga 1501 gcacccgcac gttagatcaa ctctccgcct gcgaactggt ctcctcttgg 1551 ctattctgtg ttgcactttg attggtactt gagtacaatg gctccgtgag 1601 ggtgatgaat tccgcattct ttattgccca gtcttttaat gctgaatttt 1651 tttcctcgtc caagtattct ttatatgatg atgttgggcc tggattgcaa 1701 aggaagatag ttgggattcc acctttaatt tgaattggtt tcccgtactt 1751 agtgttgctt tgccagtccc tttgggcccc catgaattct ttaaagtgct 1801 ttagatagtg ggggtcgacg tcatcgatga cgttgtacca ggcatcatta 1851 ctgtatacct ttggactgag atcaaggtga ccacacagat aattatgtgg 1901 gcctaatgat ctggcccaca ttgttttgcc cgtacgacta tcgccctcta 1951 caacgatact cttcggtctc catggccgcg cagcggcatc ccttacattc 2001 tctgaaaccc attcttcaag ttcttctgga acttgatcga aagaagaaga 2051 caaaaaagga caaacaaaca cctctaaagg aggtgcaaaa atcctatcta 2101 aattagaatt taaattatga aactgtaaaa caaaatcttt aggagccttc 2151 tcctttaata tattgagggc cgctgctttg gaccctgaat tgattgcctc 2201 ggcatatgcg tcgtttgcag attggcaacc tcctctagct gatcttccat 2251 cgatttggaa aattccatga tcaagcacgt ctccgtcttt ttccatgtat 2301 gctttaacat ctgttgagct tttagctccc tgaatgttcg gatggaaatg 2351 tgctgacctg cttggggagg tgagatcgaa gaatctgttg ttttggcact 2401 tgaatttgcc ttcgaactgg atgaggacat gcaggtgagg agacccatct 2451 tcgtgtagtt ccctgcaaat acgtatgaat aatttattag tcggggttga 2501 tagggctgag atttgggaaa gtgcctcttc tttagtaagg gagcactgtg 2551 gataagtgag gaaataattc ttcgcattta ttaaaaattt ttttggctga 2601 ggcatattga ctggtcaatc gggtcctctc aaacttggct atgcaatcgg 2651 ggaatgggtc cttatttata gttgaggacc taaatggcat atttgtaatt 2701 attgaaatga aattcaaatt tcaaacccta acgctcccaa aagcggccat 2751 ccgtataata tt