Sequence of DPV Ageratum yellow vein virus

Ageratum yellow vein virus isolate AFSP3a segment A, complete sequence.

ACC No: JN809815

Dated: 2012-01-16 | Length: 2762 | CRC: 2103886050

                
ID   JN809815; SV 1; circular; genomic DNA; STD; VRL; 2762 BP.
XX
AC   JN809815;
XX
DT   16-JAN-2012 (Rel. 111, Created)
DT   16-JAN-2012 (Rel. 111, Last updated, Version 1)
XX
DE   Ageratum yellow vein virus isolate AFSP3a segment A, complete sequence.
XX
KW   .
XX
OS   Ageratum yellow vein virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2762
RA   Shih S.L., Tsai W.S., Lee L.M., Kenyon L.;
RT   "First report and molecular characterization of begomoviruses infecting
RT   Sauropus androgynus in Thailand";
RL   Unpublished.
XX
RN   [2]
RP   1-2762
RA   Shih S.L., Tsai W.S., Lee L.M., Kenyon L.;
RT   ;
RL   Submitted (03-OCT-2011) to the INSDC.
RL   Virology, AVRDC-The World Vegetable Center, PO Box 42, Shanhua, Republic of
RL   China
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2762
FT                   /organism="Ageratum yellow vein virus"
FT                   /segment="A"
FT                   /host="Sauropus androgynus"
FT                   /isolate="AFSP3a"
FT                   /mol_type="genomic DNA"
FT                   /country="Thailand:Kamphaengsaen"
FT                   /collection_date="2010"
FT                   /db_xref="taxon:44560"
FT   gene            135. .485
FT                   /gene="V2"
FT   CDS             135. .485
FT                   /codon_start=1
FT                   /gene="V2"
FT                   /product="pre-coat protein"
FT                   /protein_id="AEX37925.1"
FT                   /translation="MWDPLVNEFPETVHGLRCMLAVKYCQLIEQTYAPDTVGYDLIRDL
FT                   ISVIRARNYVEASRRYSHFNSRLEGTTSSELRHPRDEPCCCPHCPRHQQKKDMDQQAHV
FT                   SQAQILQSVQKP"
FT   gene            295. .1068
FT                   /gene="V1"
FT   CDS             295. .1068
FT                   /codon_start=1
FT                   /gene="V1"
FT                   /product="coat protein"
FT                   /protein_id="AEX37922.1"
FT                   /translation="MSKRPADIVISTPASKVRRRLNFDTPVMSRAAAPTVLVTNKKRIW
FT                   TNRPMYRKPRFYRVYKSPDVPKGCEGPCKVQSYEQRHDISHVGKVLCVSDVTRGSGLTH
FT                   RVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVIFYLVRDRRPYGSAMDFGQVFNMYDNE
FT                   PSTATIKNDLRDRYQVLRKFTATVTGGQYASKEQALVRKFMKINNYVVYNHQEAAKYDN
FT                   HTENALLLYMACTHASNPVYATLKIRIYFYDSVQN"
FT   gene            complement(1065. .1469)
FT                   /gene="C3"
FT   CDS             complement(1065. .1469)
FT                   /codon_start=1
FT                   /gene="C3"
FT                   /product="replication enhancement protein"
FT                   /protein_id="AEX37924.1"
FT                   /translation="MDSRTGELLTATQCESGVYIWTIKNPLYFKITKHHERPFNTNHDI
FT                   ITIQIQFNHNLRKALGIHQCFLNFQIWTRLQPQTWRFLRVFRVQCMKYLDNMGVISINN
FT                   VIRACDHVLWDVLEKTEYVTQSNIIKFNLY"
FT   gene            complement(1210. .1617)
FT                   /gene="C2"
FT   CDS             complement(1210. .1617)
FT                   /codon_start=1
FT                   /gene="C2"
FT                   /product="transcriptional activation protein"
FT                   /protein_id="AEX37923.1"
FT                   /translation="MRNSSPSRSHCTQVPIKVQHRIAKRRPVRRRRVDLTCGCSYYFGI
FT                   DCANHGFSHRGITHCNSMREWRVYLDDQKSPIFQDNQAPRETIQHQPRHHNDPNTVQPQ
FT                   PEESVGNTPVFSELPDLDSLTTSDLAFLKSI"
FT   gene            complement(1517. .2605)
FT                   /gene="C1"
FT   CDS             complement(1517. .2605)
FT                   /codon_start=1
FT                   /gene="C1"
FT                   /product="replication-associated protein"
FT                   /protein_id="AEX37921.1"
FT                   /translation="MPQPKKFLINAKNYFLTYPQCSLTKEEALSQISALSTPTNKLFIR
FT                   ICRELHEDGSPHLHVLIQFEGKFKCQNNRFFDLTSPSRSAHFHPNIQGAKSSTDVKAYM
FT                   EKDGDVLDHGIFQIDGRSARGGCQSANDAYAEAINSGSKAAALNILKEKAPKDFVLQFH
FT                   NLNSNLDRIFAPPLEVFVCPFLSSSFDQVPEELEEWVSENVRDAAARPWRPKSIVVEGD
FT                   SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT                   QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNSALKDWAIKNAEFITLTEPL
FT                   YSSTNQSATQNSQEETSSQAES"
FT   gene            complement(2155. .2577)
FT                   /gene="C4"
FT   CDS             complement(2155. .2577)
FT                   /codon_start=1
FT                   /gene="C4"
FT                   /product="C4 protein"
FT                   /protein_id="AEX37926.1"
FT                   /translation="MRRIISSLIHSAPLLKKRHFPKSQPYQPRLINYSYVFAGNYTKMG
FT                   LLTCMSSSSSKANSSAKTTDSSISPPQAGQHISIRTFRELKAQQMLKHTWKKTETCLIM
FT                   EFSKSMEDQLEEVANLQTTHMPRQSIQGPKQRPSIY"
XX
SQ   Sequence 2762 BP; 736 A; 556 C; 595 G; 875 T; 0 other;

jn809815 Length: 2762  16-JAN-2012  Type: N  Check: 2090  ..

       1  accggatggc cgcgattttt tttaaagtgg tccccaccac taacaaatgt
      51  cccccactaa aaacgctctc tcaaagttta attgttttgt ggtcccttat
     101  ttaaacttgc tcagcaagta gttcactccg cactatgtgg gatccattag
     151  taaacgagtt tcccgaaact gttcacggtc ttaggtgtat gcttgccgta
     201  aaatattgtc agttaattga acagacatac gctccagata cggttggtta
     251  cgatcttata cgagatttaa tttcagtaat tcgtgctcgc aattatgtcg
     301  aagcgtcccg ccgatatagt catttcaact cccgcctcga aggtacgacg
     351  tcgtctgaac ttcgacaccc ccgtgatgag ccgtgctgct gcccccactg
     401  tcctcgtcac caacaaaaaa aggatatgga ccaacaggcc catgtatcgc
     451  aagcccagat tctacagagt gtacaaaagc cctgatgtgc ccaaaggttg
     501  tgaaggtcca tgtaaggtcc aatcgtatga acagaggcac gacatatccc
     551  atgttggtaa agtattatgt gttagtgatg tcactcgtgg tagtgggctt
     601  acccatcgtg ttggtaagag attctgtgtg aagtccgttt atgtattggg
     651  taagatatgg atggatgaaa atatcaaaac caagaaccat acgaacactg
     701  tgatttttta tcttgttcgt gatagaaggc cctatggttc tgctatggat
     751  tttggtcagg tgtttaacat gtatgataat gagcccagta ctgctactat
     801  caagaatgat cttcgagatc gttatcaagt gttaaggaaa ttcactgcaa
     851  cagttacagg tggtcaatat gcttctaagg agcaggcgtt ggttaggaaa
     901  tttatgaaga ttaataatta tgtagtttat aatcatcaag aggctgctaa
     951  gtatgacaat catactgaga atgccttgtt attgtatatg gcttgtaccc
    1001  atgccagtaa tccagtgtat gctactttga agatcagaat ctatttttat
    1051  gattctgttc agaattaata aagattgaat tttattatat tagattgtgt
    1101  tacatattct gttttttcca atacatccca taatacatga tcacatgctc
    1151  taattacatt gttaatacta attacaccca tattatctaa atatttcata
    1201  cattgaaccc taaatactct taagaaacgc caagtctgag gttgtaagcg
    1251  agtccagatc tggaagttca gaaaacactg gtgtattccc aacgctttcc
    1301  tcaggttgtg gttgaactgt atttggatcg ttatgatgtc gtggttggtg
    1351  ttgaatggtc tctcgtggtg cttggttatc ttgaaatata ggggattttt
    1401  gatcgtccag atatacacgc cactctcgca ttgagttgca gtgagtaatt
    1451  cccctgtgcg agaatccatg attggcgcag tctatgccga agtagtatga
    1501  gcacccgcac gttagatcaa ctctccgcct gcgaactggt ctcctcttgg
    1551  ctattctgtg ttgcactttg attggtactt gagtacaatg gctccgtgag
    1601  ggtgatgaat tccgcattct ttattgccca gtcttttaat gctgaatttt
    1651  tttcctcgtc caagtattct ttatatgatg atgttgggcc tggattgcaa
    1701  aggaagatag ttgggattcc acctttaatt tgaattggtt tcccgtactt
    1751  agtgttgctt tgccagtccc tttgggcccc catgaattct ttaaagtgct
    1801  ttagatagtg ggggtcgacg tcatcgatga cgttgtacca ggcatcatta
    1851  ctgtatacct ttggactgag atcaaggtga ccacacagat aattatgtgg
    1901  gcctaatgat ctggcccaca ttgttttgcc cgtacgacta tcgccctcta
    1951  caacgatact cttcggtctc catggccgcg cagcggcatc ccttacattc
    2001  tctgaaaccc attcttcaag ttcttctgga acttgatcga aagaagaaga
    2051  caaaaaagga caaacaaaca cctctaaagg aggtgcaaaa atcctatcta
    2101  aattagaatt taaattatga aactgtaaaa caaaatcttt aggagccttc
    2151  tcctttaata tattgagggc cgctgctttg gaccctgaat tgattgcctc
    2201  ggcatatgcg tcgtttgcag attggcaacc tcctctagct gatcttccat
    2251  cgatttggaa aattccatga tcaagcacgt ctccgtcttt ttccatgtat
    2301  gctttaacat ctgttgagct tttagctccc tgaatgttcg gatggaaatg
    2351  tgctgacctg cttggggagg tgagatcgaa gaatctgttg ttttggcact
    2401  tgaatttgcc ttcgaactgg atgaggacat gcaggtgagg agacccatct
    2451  tcgtgtagtt ccctgcaaat acgtatgaat aatttattag tcggggttga
    2501  tagggctgag atttgggaaa gtgcctcttc tttagtaagg gagcactgtg
    2551  gataagtgag gaaataattc ttcgcattta ttaaaaattt ttttggctga
    2601  ggcatattga ctggtcaatc gggtcctctc aaacttggct atgcaatcgg
    2651  ggaatgggtc cttatttata gttgaggacc taaatggcat atttgtaatt
    2701  attgaaatga aattcaaatt tcaaacccta acgctcccaa aagcggccat
    2751  ccgtataata tt