Sequence of DPV Chickpea chlorosis Australia virus
Chickpea chlorosis Australia virus isolate CpCV-D_AU_2612_2010, complete genome.
ACC No: JN989419
Dated: 2013-03-17 | Length: 2574 | CRC: -1409262247
ID JN989419; SV 1; circular; genomic DNA; STD; VRL; 2574 BP. XX AC JN989419; XX DT 20-MAR-2012 (Rel. 112, Created) DT 17-MAR-2013 (Rel. 116, Last updated, Version 3) XX DE Chickpea chlorosis Australia virus isolate CpCV-D_AU_2612_2010, complete DE genome. XX KW . XX OS Chickpea chlorosis Australia virus OC Viruses; ssDNA viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2574 RX PUBMED; 22406325. RA Hadfield J., Thomas J.E., Schwinghamer M.W., Kraberger S., Stainton D., RA Dayaram A., Parry J.N., Pande D., Martin D.P., Varsani A.; RT "Molecular characterisation of dicot-infecting mastreviruses from RT Australia"; RL Virus Res. 166(1-2):13-22(2012). XX RN [2] RP 1-2574 RA Hadfield J., Thomas J.E., Schwinghamer M.W., Parry J.N., Kraberger S., RA Stainton D., Dayaram A., Pande D., Martin D.P., Varsani A.; RT ; RL Submitted (03-NOV-2011) to the INSDC. RL School of Biological Sciences, University of Canterbury, Private Bag 4800, RL Christchurch 8140, New Zealand XX FH Key Location/Qualifiers FH FT source 1. .2574 FT /organism="Chickpea chlorosis Australia virus" FT /host="Cicer arietinum (chickpea)" FT /isolate="CpCV-D_AU_2612_2010" FT /mol_type="genomic DNA" FT /country="Australia" FT /lat_lon="22.82 S 147.64 E" FT /collection_date="2010" FT /note="originally submitted as Chickpea chlorosis virus-D" FT /db_xref="taxon:1302848" FT CDS 1. .306 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:H9BAA4" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:H9BAA4" FT /protein_id="AFD62984.1" FT /translation="MYPAKYVVYPSESNYSYTPVGGDSSDTSSGSSSSENIFSKVVVAL FT IIILFTVGIIYLAYTLFLKDLILLLKAKKQRTTTEIGFGNTPARPNSQRQQDVGPV" FT CDS 290. .1054 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:H9BAB7" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:H9BAB7" FT /protein_id="AFD62985.1" FT /translation="MSGRYKGQVYRRKKGQYAKAYSALGVNSKRELEQLVNQPGRPLQL FT RRPALQVAEYLWTSNKAGVTFSPGGSTFLFTNFPQGANENCRHTNRTITYKMAIKAWVA FT LDGSMVNRVCKFPVYFWLVYDKNPGDSNPGPSAIFDTLYQDQPGTWTVTRNVCHRFVVK FT KQWSVMLEANGVDPSVKQGSTYYGPGPCYGWRQMNKFFKRLGVSTEWKNSSTGDVADIK FT EGALYLVCAPAGGATVRVGGRFRMYFKSVGNQ" FT CDS complement(join(1179. .1622,1712. .2311)) FT /codon_start=1 FT /product="replication associated protein" FT /db_xref="GOA:H9BAB4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H9BAB4" FT /protein_id="AFD62986.1" FT /translation="MPQTKKPSSSFRLQTKYVFLTYPRCSSDAESLRDFLWEKLSRFAI FT FFIAVATELHQDGTPHLHCLLQLDKRSNIRDPSFFDFQGNHPNIQPAKNSEQVLDYISK FT DGSVITRGDFRKHKVSPTKSDDRWRTIIQTATTKEDYLEMIKTEFPHEWATKLQWLEYS FT ANKLFPDIEPPYSSPFPNEFLQCDEEITEWLNRDLYVEPEQLQHRRRSLYICGPTRTGK FT TTWARSLGRHNYFNGGIDFTTYDPNATFNIIDDIPFKFCPNWKQLVGSQKDFTVNPKYG FT KKKRVKGGIPTIILVNNDDDWIKDMSSSQNEYFESNCLIHYMTEGETFIAARRQVTQRA FT SPPSENI" FT CDS complement(1466. .2311) FT /codon_start=1 FT /product="RepA protein" FT /db_xref="GOA:H9BAA7" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H9BAA7" FT /protein_id="AFD62983.1" FT /translation="MPQTKKPSSSFRLQTKYVFLTYPRCSSDAESLRDFLWEKLSRFAI FT FFIAVATELHQDGTPHLHCLLQLDKRSNIRDPSFFDFQGNHPNIQPAKNSEQVLDYISK FT DGSVITRGDFRKHKVSPTKSDDRWRTIIQTATTKEDYLEMIKTEFPHEWATKLQWLEYS FT ANKLFPDIEPPYSSPFPNEFLQCDEEITEWLNRDLYVVSVESYHLLHPNLSIQTATEDL FT IWMDEYTRNPNNSNTEEDPSTSADQLVPVRPLGQEASEDTITSTEESTSQPMTPTPPST FT " XX SQ Sequence 2574 BP; 725 A; 448 C; 577 G; 824 T; 0 other; jn989419 Length: 2574 17-MAR-2013 Type: N Check: 8229 .. 1 atgtatcccg ccaagtacgt ggtgtatcct tcagagagta attactctta 51 tacccctgtt ggtggtgatt cctctgatac ttcctcagga agttcttcat 101 ctgaaaatat tttttcgaaa gttgtggttg ctcttataat tattttattt 151 actgtaggta taatttattt agcttatact ctttttttaa aagatttaat 201 tcttttattg aaggccaaga agcagagaac cacaactgag atagggtttg 251 gaaatacccc tgcacgacct aatagtcaga ggcaacaaga tgtcgggccg 301 gtataaggga caggtataca gaaggaagaa ggggcagtat gcaaaggcgt 351 attccgcact tggagttaat tcaaaacggg agttggagca gttagttaat 401 caacctgggc gtcctcttca attaaggcgc ccagccctgc aggttgctga 451 atacctgtgg acgtccaata aggcgggtgt tacgttttct cctggtggtt 501 caacattttt gttcactaat ttccctcagg gtgctaatga aaactgcagg 551 cacactaacc gcaccatcac ttacaagatg gccataaagg catgggttgc 601 cttggatggc tctatggtta acagggtgtg caaatttcca gtatatttct 651 ggttagtgta tgacaagaac cctggtgata gtaatcctgg gccctcagcc 701 atatttgata ctctctatca agatcagcct ggtacatgga ctgttacccg 751 caatgtttgt cacaggttcg ttgttaaaaa acaatggtct gtgatgctgg 801 aagctaatgg agtggatcct agtgtgaaac aaggatctac ttactatggt 851 cctggacctt gctatggttg gaggcagatg aacaagtttt ttaagaggct 901 cggagttagt actgagtgga agaattcttc cacaggggat gttgctgata 951 ttaaagaagg agcactttat cttgtatgtg ctcctgcagg tggtgcaacc 1001 gttagggttg ggggtagatt tcgcatgtat ttcaaatcag ttggaaatca 1051 ataaaaaaat tatttaatat tttgatgtca tattattgag taatagtaga 1101 taggaaatta caaatgttta ttacacaatt ataaaacaac cccaaataaa 1151 aactaaatta cacacaaatc aaattacatt atatattctc tgaaggagga 1201 gaggcacgtt gagtgacttg acgacgcgca gcaataaatg tttctccctc 1251 agtcatgtaa tgaattaaac aattggattc aaagtattca ttttgagagg 1301 aagacatgtc tttgatccaa tcgtcatcgt tatttactaa tataatagtt 1351 gggatacctc ccttaaccct ttttttttta ccatattttg ggttcacagt 1401 aaaatctttc tgtgaaccta ctaattgctt ccaatttgga caaaatttaa 1451 atggtatatc atcaattatg ttgaaggtgg cgttggggtc ataggttgtg 1501 aagtcgattc ctccgttgaa gtaattgtgt cttccgaggc ttcttgccca 1551 agtggtctta ccggtacgag ttggtccgca gatgtagagg gatcttcttc 1601 tgtgttggag ttgttcgggt tcctggtgta ttcatccatc caaattagat 1651 cttctgttgc agtttgtata gataaatttg gatgaagtaa atggtaagat 1701 tctacactta ccacgtaaag gtctctgtta agccactcag taatttcttc 1751 atcacattga agaaattcat ttggaaatgg actagagtaa ggaggttcaa 1801 tatctggaaa tagtttattt gcactatatt ctagccattg gagttttgtg 1851 gcccattcat gtggaaattc agttttaatc atttccaaat aatcttcttt 1901 agttgttgca gtctgaataa tagttctcca tctgtcatca gattttgttg 1951 gggagacctt gtgttttcta aagtctcctc ttgtgatgac acttccatcc 2001 ttggagatgt agtcaagaac ttgttcagaa tttttagctg gttggatatt 2051 tggatggttt ccttgaaaat caaaaaaaga agggtcacgt atattgcttc 2101 ttttgtcaag ttgaagcagg cagtgaagat ggggagtacc atcttggtga 2151 agctcagtag caacagcgat aaagaaaata gcaaaacgtg aaagtttttc 2201 ccagagaaag tctctaagac tttcggcatc tgagctgcag cgaggataag 2251 taaggaagac atattttgtt tgaagtctga atgaagatga gggttttttt 2301 gtttgaggca tattttggct cagaacagtg ttttgaaact ctatccttta 2351 ctagcgagtg agccaaatga gccactctgt tttgtattaa ataataggca 2401 aggaccaatt ccttgttgcc acgtggggcg cactcgcgga aatttaatgt 2451 tacccgcgag tgcctggccc cacgcgagca cgatagtgcg agcaaaaagt 2501 tgaagataag atgcttttgc tcatgagcca ctcttagtgc tatataaagg 2551 tgatgtgatc tctccacttt gaaa