Sequence of DPV Chickpea chlorosis Australia virus

Chickpea chlorosis Australia virus isolate CpCV-D_AU_2612_2010, complete genome.

ACC No: JN989419

Dated: 2013-03-17 | Length: 2574 | CRC: -1409262247

                
ID   JN989419; SV 1; circular; genomic DNA; STD; VRL; 2574 BP.
XX
AC   JN989419;
XX
DT   20-MAR-2012 (Rel. 112, Created)
DT   17-MAR-2013 (Rel. 116, Last updated, Version 3)
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DE   Chickpea chlorosis Australia virus isolate CpCV-D_AU_2612_2010, complete
DE   genome.
XX
KW   .
XX
OS   Chickpea chlorosis Australia virus
OC   Viruses; ssDNA viruses; Geminiviridae; Mastrevirus.
XX
RN   [1]
RP   1-2574
RX   PUBMED; 22406325.
RA   Hadfield J., Thomas J.E., Schwinghamer M.W., Kraberger S., Stainton D.,
RA   Dayaram A., Parry J.N., Pande D., Martin D.P., Varsani A.;
RT   "Molecular characterisation of dicot-infecting mastreviruses from
RT   Australia";
RL   Virus Res. 166(1-2):13-22(2012).
XX
RN   [2]
RP   1-2574
RA   Hadfield J., Thomas J.E., Schwinghamer M.W., Parry J.N., Kraberger S.,
RA   Stainton D., Dayaram A., Pande D., Martin D.P., Varsani A.;
RT   ;
RL   Submitted (03-NOV-2011) to the INSDC.
RL   School of Biological Sciences, University of Canterbury, Private Bag 4800,
RL   Christchurch 8140, New Zealand
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2574
FT                   /organism="Chickpea chlorosis Australia virus"
FT                   /host="Cicer arietinum (chickpea)"
FT                   /isolate="CpCV-D_AU_2612_2010"
FT                   /mol_type="genomic DNA"
FT                   /country="Australia"
FT                   /lat_lon="22.82 S 147.64 E"
FT                   /collection_date="2010"
FT                   /note="originally submitted as Chickpea chlorosis virus-D"
FT                   /db_xref="taxon:1302848"
FT   CDS             1. .306
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /db_xref="GOA:H9BAA4"
FT                   /db_xref="InterPro:IPR002621"
FT                   /db_xref="UniProtKB/TrEMBL:H9BAA4"
FT                   /protein_id="AFD62984.1"
FT                   /translation="MYPAKYVVYPSESNYSYTPVGGDSSDTSSGSSSSENIFSKVVVAL
FT                   IIILFTVGIIYLAYTLFLKDLILLLKAKKQRTTTEIGFGNTPARPNSQRQQDVGPV"
FT   CDS             290. .1054
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:H9BAB7"
FT                   /db_xref="InterPro:IPR000143"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="UniProtKB/TrEMBL:H9BAB7"
FT                   /protein_id="AFD62985.1"
FT                   /translation="MSGRYKGQVYRRKKGQYAKAYSALGVNSKRELEQLVNQPGRPLQL
FT                   RRPALQVAEYLWTSNKAGVTFSPGGSTFLFTNFPQGANENCRHTNRTITYKMAIKAWVA
FT                   LDGSMVNRVCKFPVYFWLVYDKNPGDSNPGPSAIFDTLYQDQPGTWTVTRNVCHRFVVK
FT                   KQWSVMLEANGVDPSVKQGSTYYGPGPCYGWRQMNKFFKRLGVSTEWKNSSTGDVADIK
FT                   EGALYLVCAPAGGATVRVGGRFRMYFKSVGNQ"
FT   CDS             complement(join(1179. .1622,1712. .2311))
FT                   /codon_start=1
FT                   /product="replication associated protein"
FT                   /db_xref="GOA:H9BAB4"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:H9BAB4"
FT                   /protein_id="AFD62986.1"
FT                   /translation="MPQTKKPSSSFRLQTKYVFLTYPRCSSDAESLRDFLWEKLSRFAI
FT                   FFIAVATELHQDGTPHLHCLLQLDKRSNIRDPSFFDFQGNHPNIQPAKNSEQVLDYISK
FT                   DGSVITRGDFRKHKVSPTKSDDRWRTIIQTATTKEDYLEMIKTEFPHEWATKLQWLEYS
FT                   ANKLFPDIEPPYSSPFPNEFLQCDEEITEWLNRDLYVEPEQLQHRRRSLYICGPTRTGK
FT                   TTWARSLGRHNYFNGGIDFTTYDPNATFNIIDDIPFKFCPNWKQLVGSQKDFTVNPKYG
FT                   KKKRVKGGIPTIILVNNDDDWIKDMSSSQNEYFESNCLIHYMTEGETFIAARRQVTQRA
FT                   SPPSENI"
FT   CDS             complement(1466. .2311)
FT                   /codon_start=1
FT                   /product="RepA protein"
FT                   /db_xref="GOA:H9BAA7"
FT                   /db_xref="InterPro:IPR001146"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:H9BAA7"
FT                   /protein_id="AFD62983.1"
FT                   /translation="MPQTKKPSSSFRLQTKYVFLTYPRCSSDAESLRDFLWEKLSRFAI
FT                   FFIAVATELHQDGTPHLHCLLQLDKRSNIRDPSFFDFQGNHPNIQPAKNSEQVLDYISK
FT                   DGSVITRGDFRKHKVSPTKSDDRWRTIIQTATTKEDYLEMIKTEFPHEWATKLQWLEYS
FT                   ANKLFPDIEPPYSSPFPNEFLQCDEEITEWLNRDLYVVSVESYHLLHPNLSIQTATEDL
FT                   IWMDEYTRNPNNSNTEEDPSTSADQLVPVRPLGQEASEDTITSTEESTSQPMTPTPPST
FT                   "
XX
SQ   Sequence 2574 BP; 725 A; 448 C; 577 G; 824 T; 0 other;

jn989419 Length: 2574  17-MAR-2013  Type: N  Check: 8229  ..

       1  atgtatcccg ccaagtacgt ggtgtatcct tcagagagta attactctta
      51  tacccctgtt ggtggtgatt cctctgatac ttcctcagga agttcttcat
     101  ctgaaaatat tttttcgaaa gttgtggttg ctcttataat tattttattt
     151  actgtaggta taatttattt agcttatact ctttttttaa aagatttaat
     201  tcttttattg aaggccaaga agcagagaac cacaactgag atagggtttg
     251  gaaatacccc tgcacgacct aatagtcaga ggcaacaaga tgtcgggccg
     301  gtataaggga caggtataca gaaggaagaa ggggcagtat gcaaaggcgt
     351  attccgcact tggagttaat tcaaaacggg agttggagca gttagttaat
     401  caacctgggc gtcctcttca attaaggcgc ccagccctgc aggttgctga
     451  atacctgtgg acgtccaata aggcgggtgt tacgttttct cctggtggtt
     501  caacattttt gttcactaat ttccctcagg gtgctaatga aaactgcagg
     551  cacactaacc gcaccatcac ttacaagatg gccataaagg catgggttgc
     601  cttggatggc tctatggtta acagggtgtg caaatttcca gtatatttct
     651  ggttagtgta tgacaagaac cctggtgata gtaatcctgg gccctcagcc
     701  atatttgata ctctctatca agatcagcct ggtacatgga ctgttacccg
     751  caatgtttgt cacaggttcg ttgttaaaaa acaatggtct gtgatgctgg
     801  aagctaatgg agtggatcct agtgtgaaac aaggatctac ttactatggt
     851  cctggacctt gctatggttg gaggcagatg aacaagtttt ttaagaggct
     901  cggagttagt actgagtgga agaattcttc cacaggggat gttgctgata
     951  ttaaagaagg agcactttat cttgtatgtg ctcctgcagg tggtgcaacc
    1001  gttagggttg ggggtagatt tcgcatgtat ttcaaatcag ttggaaatca
    1051  ataaaaaaat tatttaatat tttgatgtca tattattgag taatagtaga
    1101  taggaaatta caaatgttta ttacacaatt ataaaacaac cccaaataaa
    1151  aactaaatta cacacaaatc aaattacatt atatattctc tgaaggagga
    1201  gaggcacgtt gagtgacttg acgacgcgca gcaataaatg tttctccctc
    1251  agtcatgtaa tgaattaaac aattggattc aaagtattca ttttgagagg
    1301  aagacatgtc tttgatccaa tcgtcatcgt tatttactaa tataatagtt
    1351  gggatacctc ccttaaccct ttttttttta ccatattttg ggttcacagt
    1401  aaaatctttc tgtgaaccta ctaattgctt ccaatttgga caaaatttaa
    1451  atggtatatc atcaattatg ttgaaggtgg cgttggggtc ataggttgtg
    1501  aagtcgattc ctccgttgaa gtaattgtgt cttccgaggc ttcttgccca
    1551  agtggtctta ccggtacgag ttggtccgca gatgtagagg gatcttcttc
    1601  tgtgttggag ttgttcgggt tcctggtgta ttcatccatc caaattagat
    1651  cttctgttgc agtttgtata gataaatttg gatgaagtaa atggtaagat
    1701  tctacactta ccacgtaaag gtctctgtta agccactcag taatttcttc
    1751  atcacattga agaaattcat ttggaaatgg actagagtaa ggaggttcaa
    1801  tatctggaaa tagtttattt gcactatatt ctagccattg gagttttgtg
    1851  gcccattcat gtggaaattc agttttaatc atttccaaat aatcttcttt
    1901  agttgttgca gtctgaataa tagttctcca tctgtcatca gattttgttg
    1951  gggagacctt gtgttttcta aagtctcctc ttgtgatgac acttccatcc
    2001  ttggagatgt agtcaagaac ttgttcagaa tttttagctg gttggatatt
    2051  tggatggttt ccttgaaaat caaaaaaaga agggtcacgt atattgcttc
    2101  ttttgtcaag ttgaagcagg cagtgaagat ggggagtacc atcttggtga
    2151  agctcagtag caacagcgat aaagaaaata gcaaaacgtg aaagtttttc
    2201  ccagagaaag tctctaagac tttcggcatc tgagctgcag cgaggataag
    2251  taaggaagac atattttgtt tgaagtctga atgaagatga gggttttttt
    2301  gtttgaggca tattttggct cagaacagtg ttttgaaact ctatccttta
    2351  ctagcgagtg agccaaatga gccactctgt tttgtattaa ataataggca
    2401  aggaccaatt ccttgttgcc acgtggggcg cactcgcgga aatttaatgt
    2451  tacccgcgag tgcctggccc cacgcgagca cgatagtgcg agcaaaaagt
    2501  tgaagataag atgcttttgc tcatgagcca ctcttagtgc tatataaagg
    2551  tgatgtgatc tctccacttt gaaa