Sequence of DPV Tobacco yellow dwarf virus
Tobacco yellow dwarf virus-A isolate TYDV-A_AU_3492M_2002, complete genome.
ACC No: JN989446
Dated: 2012-12-04 | Length: 2574 | CRC: 1120957772
ID JN989446; SV 1; circular; genomic DNA; STD; VRL; 2574 BP. XX AC JN989446; XX DT 20-MAR-2012 (Rel. 112, Created) DT 04-DEC-2012 (Rel. 115, Last updated, Version 4) XX DE Tobacco yellow dwarf virus-A isolate TYDV-A_AU_3492M_2002, complete genome. XX KW . XX OS Tobacco yellow dwarf virus-A OC Viruses; ssDNA viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2574 RX PUBMED; 22406325. RA Hadfield J., Thomas J.E., Schwinghamer M.W., Kraberger S., Stainton D., RA Dayaram A., Parry J.N., Pande D., Martin D.P., Varsani A.; RT "Molecular characterisation of dicot-infecting mastreviruses from RT Australia"; RL Virus Res. 166(1-2):13-22(2012). XX RN [2] RP 1-2574 RA Hadfield J., Thomas J.E., Schwinghamer M.W., Parry J.N., Kraberger S., RA Stainton D., Dayaram A., Pande D., Martin D.P., Varsani A.; RT ; RL Submitted (03-NOV-2011) to the INSDC. RL School of Biological Sciences, University of Canterbury, Private Bag 4800, RL Christchurch 8140, New Zealand XX FH Key Location/Qualifiers FH FT source 1. .2574 FT /organism="Tobacco yellow dwarf virus-A" FT /host="Cicer arietinum (chickpea)" FT /isolate="TYDV-A_AU_3492M_2002" FT /mol_type="genomic DNA" FT /country="Australia" FT /lat_lon="32.11 S 148.07 E" FT /collection_date="2002" FT /db_xref="taxon:1162558" FT CDS 1. .309 FT /codon_start=1 FT /product="movement protein" FT /protein_id="AFD63093.1" FT /translation="MFPAKYQVFPSDINYSYTPGGTFEQYQPQKAGESSEHFFSKVVVA FT LIVILFAVGIVYLAYTLFLKDLILLLKAKKQKTTTEIGFGNTPLRRPSEGTPNGGPV" FT CDS 293. .1057 FT /codon_start=1 FT /product="coat protein" FT /protein_id="AFD63092.1" FT /translation="MAGRYKGLVYSRKRGRYGKTYQALGVKSQRELEQLVNQPGRPVSN FT RRPALQVAEFLWTTNKAGVTFSPGGSTFLITNYPQGANENCRHTNRTITYKMAVKTWVA FT LDGSMVSRVAKFPIYFWLVYDKNPGDSNPSPSAIFDTVYQDQPGTWTVTRNVCHRFVVK FT KTWSCMLESNGVDPNAKQGSSYYGPGPVYQWRHVTKFFKRLGVSTEWKNSSTGDVADIK FT EGALYLVCAPGGGATVRVGGRFRMYFKSVGNQ" FT CDS complement(join(1213. .1620,1707. .2306)) FT /codon_start=1 FT /product="replication associated protein" FT /protein_id="AFD63094.1" FT /translation="MPSTPQKNKSFRLQTKYVFLTYPRCSSSAENLRDFLWDKLSRFAI FT FFIAIATELHQDGTPHLHCLIQLDKRSNIRDPSFFDLGGNHPNIQPAKNSEQVLEYISK FT DGNVITKGEFKKHRVSPSKSDERWRTIIQTATSKEEYLDMIKDEFPHEWATKLQWLEYS FT ANKLFPPQPEIYHSPFRSEDLRCHEDLANWRDEHLYHDKGGTRTRHPSLYICGPTGKTT FT WARSLGRHNYWNGTIDFTVYDDHATYNVIDDIPFKFVPLWKQLIGCQYDFTVNPKYGKK FT KKIKGGVPCIILCNDDEDWLKNMSPAQIEYFEANCITHFMYAAETFFAPESSSH" FT CDS complement(1425. .2306) FT /codon_start=1 FT /product="RepA protein" FT /protein_id="AFD63091.1" FT /translation="MPSTPQKNKSFRLQTKYVFLTYPRCSSSAENLRDFLWDKLSRFAI FT FFIAIATELHQDGTPHLHCLIQLDKRSNIRDPSFFDLGGNHPNIQPAKNSEQVLEYISK FT DGNVITKGEFKKHRVSPSKSDERWRTIIQTATSKEEYLDMIKDEFPHEWATKLQWLEYS FT ANKLFPPQPEIYHSPFRSEDLRCHEDLANWRDEHLYHVSIDAYTYIHPVPYDQALSDLE FT WMADLTRTREGLEPDTPRSTSADLPVRQLGPEASEDTITGMGPSTSLSMMTTRPTTSST FT TSPSNSSHYGSN" XX SQ Sequence 2574 BP; 689 A; 481 C; 624 G; 780 T; 0 other; jn989446 Length: 2574 04-DEC-2012 Type: N Check: 9418 .. 1 atgtttcccg ccaaatatca agtgttccca tctgatataa attactcata 51 tacccctggt ggtacttttg agcaatatca gccgcagaaa gcgggtgagt 101 catcggagca cttcttttcg aaagttgttg ttgctttgat tgttatcctt 151 tttgctgtag gtatcgtata cttagcgtat acgttattct tgaaggattt 201 aatccttctt ttgaaagcaa agaagcagaa gacgacaact gagatagggt 251 ttggtaatac ccctctcaga agacctagtg aaggaacccc taatggcggg 301 ccggtataag ggtttggtct attcccggaa aaggggacgt tatggcaaga 351 cgtatcaagc tcttggcgtg aaatcccaaa gggagttgga gcagttagtt 401 aatcaaccag ggcgtcctgt ttctaacagg cgtcctgctc tacaggtcgc 451 agagtttctg tggacgacga ataaagcagg agtgacgttt tctcctgggg 501 ggtctacttt cctcatcact aattaccctc aaggtgcgaa cgagaactgt 551 agacacacca acagaacaat aacctataag atggctgtga agacgtgggt 601 tgctttggat ggctcgatgg tctctagggt tgcaaagttc ccaatctatt 651 tctggttggt gtatgataaa aaccctggcg atagtaatcc atcgccttcc 701 gctatttttg atactgtata tcaagatcag cctgggactt ggactgtgac 751 tcgtaatgta tgtcacaggt ttgtcgttaa aaaaacctgg tcatgtatgt 801 tggagtctaa tggagttgac cctaatgcta aacaagggtc ttcttactat 851 ggtcctgggc ctgtgtatca gtggaggcat gttactaagt tttttaaacg 901 tttaggggtt agcacagagt ggaagaattc ttccacaggt gatgttgctg 951 atattaagga aggagcacta taccttgtat gtgctcctgg tggtggtgct 1001 actgtaagag ttggcggtag attccgcatg tatttcaaat cagttggcaa 1051 tcaataaaaa tgttgttatt ttgatttcat attaatgagc ttcagtgtag 1101 agaaattcaa atcttattaa taaaaacccg gaatacaaaa acacacgaaa 1151 acgaaataaa gacaccttac aatcattaca ctatatatac cctcctatga 1201 ggagaggcac gttcagtgac tcgacgattc aggagcaaaa aatgtttccg 1251 ccgcatacat aaaatgtgta atacaattgg cttcaaagta ttcaatctga 1301 gcgggagaca tattcttcag ccagtcttca tcgtcgttac atagtataat 1351 acatggcact cctcctttta ttttcttctt ttttccatac ttagggttga 1401 cagtgaaatc atactggcaa cctattaatt gcttccataa tgggacgaat 1451 ttgaagggga tgtcgtcgat gacgttgtag gtcgcgtggt catcatagac 1501 agtgaagtcg atggtcccat tccagtaatt gtgtcttccg aggcttctgg 1551 cccaagttgt cttaccggta ggtccgcaga tgtagagcga ggggtgtctg 1601 gttctagtcc ctcccttgtc ctggttaagt cagccatcca ttcaaggtca 1651 gataaggctt gatcgtatgg gacggggtga atataagtgt aggcgtctat 1701 acttacatgg tatagatgtt cgtctctcca gttcgcaaga tcttcgtggc 1751 atcgaagatc ttcagatctg aaaggggaat ggtagatttc aggttgtggt 1801 gggaatagtt tattggcaga gtattccaac cactgtaatt ttgttgccca 1851 ttcatgagga aattcatcct taatcatgtc cagatattcc tctttagaag 1901 tcgcagtctg gataatagtt cgccatcgct catcagattt tgaaggggag 1951 actctgtgtt tcttgaactc tcctttggtg atgacgtttc cgtctttgga 2001 gatgtattca agaacttgtt cagagttttt agctggttgg atatttggat 2051 ggtttcctcc aagatcaaaa aaagaagggt cacgtatatt gcttcttttg 2101 tcaagctgaa taaggcagtg aagatgggga gtaccatctt ggtggagttc 2151 agtagcaata gcgataaaga aaatagcaaa acgtgacagt ttatcccaga 2201 ggaaatctct gagattttct gcagaagagc tgcagcgtgg ataagtaagg 2251 aatacatatt tggtttggag cctgaaggat ttgtttttct ggggggttga 2301 aggcatatta aggctcaagt tccgtacgat gaaactctat tcttaactag 2351 tgagtgagcc agtgagccag gattatatgg tatttatatt tgaaggtgga 2401 ccgttaggat cttgacacgt ggggcgcact cacggatttt aatattaccc 2451 gtgagtgctc tcttggcccc acgcgagccc ttttgggcga gcgaaagtgc 2501 gacgtccttt cctttagtgg ttcatgagtc attaaagtga tatataaaga 2551 tgacctgaca tcacaaagtt gaaa