Sequence of DPV Sclerotinia sclerotiorum mitovirus 1
Sclerotinia sclerotiorum mitovirus 1, complete genome.
ACC No: JQ013377
Dated: 2012-05-20 | Length: 2513 | CRC: 915265898
ID JQ013377; SV 1; linear; genomic RNA; STD; VRL; 2513 BP.
XX
AC JQ013377;
XX
DT 23-JAN-2012 (Rel. 111, Created)
DT 20-MAY-2012 (Rel. 112, Last updated, Version 2)
XX
DE Sclerotinia sclerotiorum mitovirus 1, complete genome.
XX
KW .
XX
OS Sclerotinia sclerotiorum mitovirus 1
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Narnaviridae;
OC Mitovirus; unclassified Mitovirus.
XX
RN [1]
RP 1-2513
RX PUBMED; 22520836.
RA Xie J., Ghabrial S.A.;
RT "Molecular characterizations of two mitoviruses co-infecting a hyovirulent
RT isolate of the plant pathogenic fungus Sclerotinia sclerotiorum";
RL Virology 428(2):77-85(2012).
XX
RN [2]
RP 1-2513
RA Xie J., Ghabrial S.A.;
RT ;
RL Submitted (10-NOV-2011) to the INSDC.
RL Department of Plant Pathology, University of Kentucky, 201F Plant Science
RL Building, 1045 Veterans Dr., Lexington, KY 40546-0312, USA
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FH Key Location/Qualifiers
FH
FT source 1. .2513
FT /organism="Sclerotinia sclerotiorum mitovirus 1"
FT /host="Sclerotinia sclerotiorum KL-1"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /collection_date="2010"
FT /db_xref="taxon:1133727"
FT 5'UTR 1. .418
FT gene 419. .2494
FT /locus_tag="SsMV1_gp1"
FT CDS 419. .2494
FT /codon_start=1
FT /transl_table=4
FT /locus_tag="SsMV1_gp1"
FT /product="RNA-dependent RNA polymerases"
FT /note="RdRp"
FT /protein_id="AEX91878.1"
FT /translation="MRKQSGLPFTIKYMKTVRLHITRYISGQPLRSNSNLVSLTDGFPT
FT KFLYLKELIDSGDNKMIRFVLTLLGYTRSIIPTIKEKNQVAPDYSSISAPFKGDGSFDI
FT PDEFIKEFISKYNLGFSPKWDNSLHYVSNKSSPMGKATLTGPFALFHMGHWNLTMLDHF
FT QSLIGEGSFKVMIGEFLEIVFKDHRAFHIGTSTNGIGKISVVEDPELKMRPIAMVDYYS
FT QLVLKPIHDGILKKLRTLPCDRTFTQDPFNNWGKTMGHKFWSLDLTSATDRFPISLQER
FT VIAHLLGDESKARAWRNILVDRDYKLPSGGWTRYSVGQPMGAYSSWTTFTLTHHLVVHY
FT AARLCGIVDFDRYILLGDDIVINHDKVARRYISIMNKLGVDISVAKTHVSKNTYEFAKR
FT WVRKGIEISGLPLRGIVSNINVLPVVVKQLVLYLYSNTTLWRGSTTELILCVFKGVKIR
FT KRFISQSNLRSSVEDIVFVIRQSLDLNTYEQIRLYLSRKIRIWEILIPKRDLIHGFIRE
FT ILCLGLVSSAEDASFDLTRFYDKFESEFRRGDFDLMLLKRHPMVLAVYNKILDMKRTLM
FT RVRNMDEMDLIDAMSLMRLDKPDKLMSNLRNSSQSISHIDMLWRRGFKKLEFTTNMTLM
FT IGEFDPANVALMDDDGEDYFEITNLKPWESYYISNLSDLCDKLEILKTPVARNEYF"
FT 3'UTR 2495. .2513
XX
SQ Sequence 2513 BP; 779 A; 453 C; 509 G; 772 T; 0 other;
jq013377 Length: 2513 20-MAY-2012 Type: N Check: 6447 ..
1 cgatcgatca tgatgcaatg gggctcttgg agacctttcg gtccccaaaa
51 gcggctcaat agagccatac acactttgtg tgtatcctgc gatcaactca
101 gccgaggtct caaagccttg ggttactgag tagtttgtag ccctggttac
151 agtctaataa actgtaatcc tgggtaactt gcttcaccgt tggcgggcac
201 cgattataga tttcgtatct ataacgcagg ccacctgcgg gggacctata
251 gtgactcacc cgtagataag tcgggatcca gctatgtata acaactggac
301 actataggtg ctcttatttt aatatacaat catgaaacta gcaagttaat
351 aattttaagg ttttagactt actatttcac aaccggatat tagtaagagg
401 ttataggaag tggaatcaat gaggaagcaa tctggtttac catttactat
451 caagtatatg aaaacagtcc gtcttcatat tacgagatat ataagtggtc
501 aaccgctaag atctaattcc aacttggttt cactaactga tggttttcct
551 acaaagttcc tttatttgaa ggaattaata gattcgggtg acaacaagat
601 gataagattt gttcttactc tcttggggta caccaggtct attataccta
651 caataaagga gaagaaccag gttgcaccag attatagttc gatatccgct
701 ccatttaaag gagatgggag tttcgatata cctgatgaat tcataaaaga
751 attcattagt aaatataatc ttggtttctc accgaagtgg gacaattcct
801 tacattacgt aagtaataaa tcctctccga tgggaaaggc aacattaact
851 ggtccatttg cattgttcca tatgggacac tgaaatctaa cgatgttaga
901 ccacttccaa tccttgattg gagagggatc tttcaaagtt atgattggtg
951 aatttcttga aatagtattc aaggaccacc gtgcattcca tattggtaca
1001 tctacaaatg gtataggtaa aatatcagta gttgaagatc cagagttgaa
1051 aatgagacca atagctatgg tggattacta tagtcaattg gttcttaaac
1101 ctatacatga tggaatcctt aagaaattaa gaactctacc gtgtgatagg
1151 acttttactc aggatccctt caacaactgg ggtaagacca tggggcacaa
1201 gttttgatca cttgatctaa ctagtgccac agaccgtttc ccaatatctc
1251 ttcaagaacg tgtaattgct catctccttg gagatgaatc aaaagcacga
1301 gcctgaagga atattttagt tgatagggat tataaacttc catctggtgg
1351 ttgaacacgt tatagtgttg gacaaccgat gggagcctat agttcctgga
1401 ctacttttac tctaacacat catcttgtcg ttcactacgc cgcacgtctg
1451 tgtggtatag tggactttga taggtatatc cttcttggtg acgatattgt
1501 gattaatcac gataaagttg caagaagata tatctctatc atgaacaagt
1551 tgggtgtgga catctctgtt gcaaaaacac atgtgtctaa aaacacatat
1601 gaatttgcta agagatgagt aaggaaaggc attgagatat caggtctacc
1651 tttaagagga attgtatcaa atataaatgt attaccagtt gttgtaaaac
1701 aactagtttt gtatctatat tccaatacaa ctctttgaag aggtagcact
1751 actgaattga tcttatgtgt cttcaaaggc gtaaagatca gaaagagatt
1801 tatttctcaa tctaatctta gatcgtcggt tgaagatatt gtctttgtta
1851 tcagacaatc ccttgacctt aatacctatg aacagatacg gttgtatctt
1901 tcaaggaaaa taaggatttg ggaaattcta ataccaaaga gagatctaat
1951 tcacggtttt atccgtgaga tcttgtgtct aggtctagta agttctgctg
2001 aagatgcatc attcgatctt actcgttttt acgataagtt cgaatcggaa
2051 ttccgaagag gagatttcga tttgatgctt cttaagcggc atcccatggt
2101 gttggctgtc tataataaaa tcttagacat gaaacggacc ctaatgaggg
2151 tacgtaacat ggatgagatg gaccttatag atgcaatgtc tctcatgaga
2201 cttgacaaac cagataaact gatgtcaaat cttagaaatt cttcacaatc
2251 tataagtcat atagatatgc tttgaaggcg tggtttcaag aagcttgaat
2301 tcactaccaa catgacatta atgattggtg agtttgatcc cgccaatgta
2351 gcattaatgg atgatgatgg tgaagactac ttcgagatca ccaaccttaa
2401 accatgagaa tcctactata tctcaaactt gtcagattta tgtgacaagc
2451 ttgaaatcct aaagactccg gttgctagaa atgagtattt ctagtaatgt
2501 gctattgcac agc