Sequence of DPV Sclerotinia sclerotiorum mitovirus 2
Sclerotinia sclerotiorum mitovirus 2, complete genome.
ACC No: JQ013378
Dated: 2012-05-20 | Length: 2445 | CRC: 806514911
ID JQ013378; SV 1; linear; genomic RNA; STD; VRL; 2445 BP.
XX
AC JQ013378;
XX
DT 23-JAN-2012 (Rel. 111, Created)
DT 20-MAY-2012 (Rel. 112, Last updated, Version 2)
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DE Sclerotinia sclerotiorum mitovirus 2, complete genome.
XX
KW .
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OS Sclerotinia sclerotiorum mitovirus 2
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Narnaviridae;
OC Mitovirus; unclassified Mitovirus.
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RN [1]
RP 1-2445
RX PUBMED; 22520836.
RA Xie J., Ghabrial S.A.;
RT "Molecular characterizations of two mitoviruses co-infecting a hyovirulent
RT isolate of the plant pathogenic fungus Sclerotinia sclerotiorum";
RL Virology 428(2):77-85(2012).
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RN [2]
RP 1-2445
RA Xie J., Ghabrial S.A.;
RT ;
RL Submitted (10-NOV-2011) to the INSDC.
RL Department of Plant Pathology, University of Kentucky, 201F Plant Science
RL Building, 1045 Veterans Dr., Lexington, KY 40546-0312, USA
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FH Key Location/Qualifiers
FH
FT source 1. .2445
FT /organism="Sclerotinia sclerotiorum mitovirus 2"
FT /host="Sclerotinia sclerotiorum KL-1"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /collection_date="2010"
FT /db_xref="taxon:1133728"
FT 5'UTR 1. .311
FT gene 312. .2342
FT /locus_tag="SsMV2_gp1"
FT CDS 312. .2342
FT /codon_start=1
FT /transl_table=4
FT /locus_tag="SsMV2_gp1"
FT /product="RNA-dependent RNA polymerases"
FT /note="RdRp"
FT /protein_id="AEX91879.1"
FT /translation="MTQPLVLKLMKWVRKYYYKGTSPNLAAFTRHAIHLFFLWGKTKGW
FT KWTATAFKLTRLAITRTLAGQELPRPFGISLCKKTNLPMMLPLQVRLAILRKDFLLISY
FT VLTVLQLSRLILGTGVIESYDSITRPCTGSNPFTGASVSIVMKRMGIRRLDEPTSFTFP
FT WVSTSGPNGISIATSFSDLMNIPQPILECLYTLGGPEFKEKVSSLKGFVETTNGLLWKL
FT TKLDPDKTGNLLRRISIKKDKEYKSRPFAIVDYITQSALTPLHDRLYRVLGSIPQDCTF
FT DQNKGFKDLLYGGGPYYSFDLTSATDRFPIFVQEMVLAWLTSEQYASAWVQAMVGIPFS
FT TPNGPEVEFKCGQPLGAKSSWAMFTLSHHFVVQYCAMVLNIDNPRYKILGDDIVICDHA
FT LAAKYLEVMSQLGVEISSVKTHVSENLFEFAKRFGLQSVEISSFPITALVSDINNYVSI
FT VATLATTAVERGNLPLFVSGNTPRFWESLLKKEDKPRLVNNLVHSARLLSYLLMSNKPY
FT LVAQSDLLRFAEAAGFGGLAISQVFAAYKRAVLYMKDREIDKLADMSMRFIRPVQSMLS
FT QIMFLPWRGRVTVDYRKFIPIIDSIDSNKELYLSFREEFEKADDLVTLNKVLDDHPIRP
FT MPNLNGLQPNRPKLLVGQTRAALIRALVKELTMLAKGEEPK"
FT 3'UTR 2343. .2445
XX
SQ Sequence 2445 BP; 666 A; 564 C; 572 G; 643 T; 0 other;
jq013378 Length: 2445 20-MAY-2012 Type: N Check: 1495 ..
1 ggttttcgtg atcgtatcac gaataccacg gagaccccca ggggtaaatc
51 cctcccactc gacagagtgc ctcgggatcc ctgactttcc tcctacgcat
101 tgttcaccta caaagtaggc ggcagaacaa gcgagcctag ggctcggtcg
151 ctacggcgcc tgactacccg acggccccac ggtgtggttt agctagaaag
201 ccaactagcg tgattaccta ccggggagaa acctattcag ctcatgttac
251 tgaaccgaaa ggtcactaca tgggcggtgt agattaagag gaagttcaat
301 tggtaagtct tatgactcaa ccactagttt taaaactaat gaaatgagtc
351 cgtaagtact attacaaagg aacttctccg aatctagccg cgtttacccg
401 acacgcaatt cacttattct tcctgtgagg gaagactaag gggtgaaagt
451 ggaccgcgac agcgttcaag ctgactcggt tggctatcac ccgtacactt
501 gctggccagg agcttccacg accctttggg atctctttgt gtaagaaaac
551 aaacttacct atgatgttac cattacaggt gaggcttgct atcctacgta
601 aagatttcct cctaatatca tacgtcttaa cggttttaca actgtcgaga
651 ctgatcttag ggacaggggt catcgaatca tacgatagta tcactcgtcc
701 gtgcacgggt tccaacccgt tcacgggggc gagcgtatct atcgttatga
751 aacgaatggg gatacgtcgt ttagatgaac ccacatcttt cactttccct
801 tgggtgtcca ctagcgggcc gaatggaatt tccatcgcta catctttctc
851 tgatttgatg aatatccctc agcccatcct tgagtgtttg tacactctcg
901 gagggcctga gtttaaggag aaggtgtcca gtttgaaagg attcgtagag
951 accactaatg gtcttctatg aaaacttacc aagctggatc cagataaaac
1001 tggtaacctc ctccggcgga tctccatcaa gaaagataaa gagtataagt
1051 cccgaccttt tgcaattgtc gattatataa cccagagcgc attgactcct
1101 ctacacgata gattatatcg cgtattagga tcaatacctc aggattgtac
1151 tttcgaccaa aacaaagggt ttaaagactt actgtacggt ggcggtccat
1201 attactcgtt cgatttaact tcggcaacag acagatttcc tatattcgta
1251 caggaaatgg tcttagcgtg gttaacgagt gagcagtatg cttccgcctg
1301 agtacaggct atggtgggaa ttcccttcag cacgcctaat ggtcccgagg
1351 tagagttcaa gtgtggtcaa cctctagggg caaaatcgtc atgagctatg
1401 ttcaccctgt cccatcattt tgtggtccag tactgtgcaa tggttttaaa
1451 cattgacaat cctagataca agattttggg ggatgacata gtgatatgcg
1501 atcacgccct agcggcgaaa tacttggagg ttatgtctca actaggagtc
1551 gagatctcgt cggttaagac tcacgtaagt gaaaacttat ttgagtttgc
1601 caaaagattc ggtctccagt cagttgagat atcaagtttc ccgatcaccg
1651 ctctcgtgtc agacataaac aactatgttt ccatagttgc tactctggcc
1701 acgacagctg tcgaacgtgg gaacttacct cttttcgtct ccggaaacac
1751 tcctcggttc tgggagagct tattgaagaa ggaggataaa cccagattag
1801 ttaataatct ggtccactct gctaggcttc tgtcatatct cctgatgtcc
1851 aataaaccgt acctggtagc tcagtctgac cttttaaggt ttgccgaggc
1901 tgcagggttt ggtggattgg ctatctctca ggtatttgct gcttataaaa
1951 gggcagtctt atacatgaag gatagggaga tagacaagct ggcagacatg
2001 tctatgcggt tcatacgacc cgtacagtcc atgctgtcgc aaataatgtt
2051 cctcccttgg cgaggccggg tgacggttga ctatagaaag tttataccga
2101 tcatcgactc tatcgactcc aacaaggagc tctatctgag cttccgagag
2151 gagttcgaga aagccgatga cctggtaacg ctaaataagg tgttggatga
2201 tcatccgatc aggccaatgc ctaatttaaa cggtctacaa ccaaatcgcc
2251 ctaaattgct ggtcggtcag acgcgagctg ccttaataag ggcactagtc
2301 aaagaattga ctatgctagc gaaaggagaa gaacctaagt aatgtactta
2351 ggaactcaca caccgcaaca aatagggtat tcgtacccgg ggggttgcgt
2401 gttattccac tcatggagtg gaaaaaaaaa aaaaaaaaaa aaaaa