Sequence of DPV Tomato yellow leaf curl virus
Tomato yellow leaf curl virus strain HBYQ, complete genome.
ACC No: JQ038232
Dated: 2012-02-12 | Length: 2781 | CRC: 586165243
ID JQ038232; SV 1; circular; genomic DNA; STD; VRL; 2781 BP. XX AC JQ038232; XX DT 12-FEB-2012 (Rel. 111, Created) DT 12-FEB-2012 (Rel. 111, Last updated, Version 1) XX DE Tomato yellow leaf curl virus strain HBYQ, complete genome. XX KW . XX OS Tomato yellow leaf curl virus OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2781 RA Zhu X., Liu W.; RT ; RL Submitted (16-NOV-2011) to the INSDC. RL Department of Plant Pathology, Shandong Agricultural University, No. 61, RL Daizong Street, Tai'an, Shandong 271018, China XX FH Key Location/Qualifiers FH FT source 1. .2781 FT /organism="Tomato yellow leaf curl virus" FT /host="Lycopersicon esculentum" FT /strain="HBYQ" FT /mol_type="genomic DNA" FT /country="China:Yongqing, Hebei province" FT /collected_by="Zhu Xiao-ping and Liu Wen-hao" FT /collection_date="Aug-2011" FT /db_xref="taxon:10832" FT CDS 148. .498 FT /codon_start=1 FT /product="AV2 protein" FT /protein_id="AEZ67152.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEEINEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV FT PEAQNIQNVSKP" FT CDS 308. .1084 FT /codon_start=1 FT /product="AV1 protein" FT /protein_id="AEZ67153.1" FT /translation="MSKRPGDIIISTPASKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN" FT CDS complement(1081. .1485) FT /codon_start=1 FT /product="AC3 protein" FT /protein_id="AEZ67154.1" FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNNDI FT ISIQIRFNHNIRKALGIHKCFLNFRIWTTLQPQTGRFLRVFRYQVLKYLDSLGVISINN FT VIRAVDHVLYDVLENTINVTETHDIKYKFY" FT CDS complement(1226. .1633) FT /codon_start=1 FT /product="AC2 protein" FT /protein_id="AEZ67155.1" FT /translation="MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHI FT NCNNHGFTHRGTHHCSSSREWRFYLGDKQSPLFQDNRTQPEAISNEQRHHFHSDKIQPQ FT HQEGIGDSQMFSQLPNLDDITASDWSFLKSI" FT CDS complement(1542. .2615) FT /codon_start=1 FT /product="AC1 protein" FT /protein_id="AEZ67156.1" FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLKNLETPTNKKYIKVC FT RELHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK FT DGDFIDFGVFQIDGRSTRGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL FT SSNLDRIFSPPLEIYVSPFLSSSFNQVPDELDEWVAENVVSSAARPWRPISIVIEGDSR FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDVWYNVIDDVDPHYLKHFKEFMGAQRDWQS FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPLFA FT SINQGSTQDSQEETNKA" FT CDS complement(2171. .2464) FT /codon_start=1 FT /product="AC4 protein" FT /protein_id="AEZ67157.1" FT /translation="MGNHISMCLSNSKANTNVRTNGSSTWYPQTGQHISIRTFRQLRAQ FT QMSRPTWRKTETSLILEFSKSMADQLEEVNNLPTTHMPRHSIQAVNPRPSIY" XX SQ Sequence 2781 BP; 757 A; 528 C; 609 G; 887 T; 0 other; jq038232 Length: 2781 12-FEB-2012 Type: N Check: 5881 .. 1 accggatggc cgcgccttct ctttttatgt ggtccccacg agggttccac 51 atacgttact gtcaaccaat caaattgcat cctcaaacgt tagataagtg 101 ttcatttgtc tttatatact tggtccccaa gtagtttgtc ttgcactatg 151 tgggatccac ttctaaatga atttcctgaa tctgttcacg gatttcgttg 201 tatgttagct attaaatatt tgcagtccgt tgaggaaatt aacgagccca 251 atacattggg ccacgattta attagggatc ttatatctgt tgtaagggcc 301 cgtgactatg tcgaagcgac caggcgatat aatcatttcc acgcccgcct 351 cgaaggttcg ccgaaggctg aacttcgaca gcccatacag cagccgtgct 401 gctgtcccca ttgtccaagg cacaaacaag cgacgatcat ggacgtacag 451 gcccatgtac cggaagccca gaatatacag aatgtatcga agccctgatg 501 ttcctcgtgg atgtgaaggc ccatgtaaag tccagtctta tgagcaacgg 551 gatgatatta agcatactgg tattgttcgt tgtgttagtg atgttactcg 601 tggatctgga attactcaca gagtgggtaa gaggttctgt gttaaatcga 651 tatatttttt aggtaaagtc tggatggatg aaaatatcaa gaagcagaat 701 cacactaatc aggtcatgtt cttcttggtt cgtgatagaa ggccctatgg 751 aaacagccca atggattttg gacaggtttt taatatgttc gataatgagc 801 ccagtaccgc aactgtgaag aatgatttgc gggataggtt tcaagtgatg 851 aggaaatttc atgctacagt tattggtggg ccctctggaa tgaaggaaca 901 ggcattagtt aagagatttt ttagaattaa cagtcatgta acttataatc 951 atcaggaggc agccaagtat gagaaccata ctgaaaacgc cttgttattg 1001 tatatggcat gtacgcatgc ctctaatcca gtgtatgcaa ctatgaaaat 1051 acgcatctat ttctatgatt caatatcaaa ttaataaaat ttatatttta 1101 tatcatgagt ttctgttaca tttattgtgt tttcaagtac atcatacaat 1151 acatgatcaa ctgctctgat tacattgtta attgaaatta caccaagact 1201 atctaaatac ttaagaactt gatatctaaa tactcttaag aaacgaccag 1251 tctgaggctg taatgtcgtc caaattcgga agttgagaaa acatttgtga 1301 atccccaatg ccttcctgat gttgtggttg aatcttatct gaatggaaat 1351 gatgtcgttg ttcattagaa atggcctctg gctgtgttct gttatcttga 1401 aatagagggg attgtttatc tcccagataa aaacgccatt ctctgcttga 1451 ggagcagtga tgagttcccc tgtgcgtgaa tccatgattg ttgcagttga 1501 tgtggaggta gtatgagcag ccacagtcta ggtctacacg cttacgcctt 1551 attggtttct tcttggctat cttgtgttga accttgattg atacttgcga 1601 acagtggctc gtagagggtg acgaaggttg cattcttgag agcccaattt 1651 ttcaaggata tgtttttttc ttcgtctaga tattccctat atgaggaggt 1701 aggtcctgga ttgcagagga agatagtggg aattccccct ttaatttgaa 1751 tgggcttccc gtactttgtg ttgctttgcc agtccctctg ggcccccatg 1801 aattccttga agtgctttaa ataatgcggg tctacgtcat caatgacgtt 1851 gtaccacaca tcattactgt acacctttgg gcttaggtct agatgtccac 1901 ataaataatt atgtgggcct agagacctgg cccacattgt tttgcctgtt 1951 ctgctatcac cctcaatgac aatacttatg ggtctccatg gccgcgcagc 2001 ggaagatacg acgttctcgg cgacccactc gtcaagttca tctggaactt 2051 gattaaaaga agaagaaaga aatggagaaa cataaatttc taaaggagga 2101 ctaaaaatcc tatctaaatt tgaacttaaa ttatgaaatt gtaaaatata 2151 gtcctttggg gccttctctt ttaatatatt gagggcctcg gatttactgc 2201 ctgaattgag tgcctcggca tatgcgtcgt tggcagattg ttgacctcct 2251 ctagttgatc tgccatcgat ttggaaaact ccaaaatcaa tgaagtctcc 2301 gtctttctcc acgtaggtct tgacatctgt tgagctctta gctgcctgaa 2351 tgttcggatg gaaatgtgct gacctgtttg gggataccag gtcgaagaac 2401 cgttggttct tacattggta tttgccttcg aattggataa gcacatggag 2451 atgtggttcc ccattctcgt ggagttctct gcaaactttg atgtattttt 2501 tatttgttgg ggtttctagg ttttttaatt gggaaagtgc ttcctcttta 2551 gagagagaac aattgggata tgttaggaaa taatttttgg catatatttt 2601 aaataaacga ggcatgttga aatgaattgg tgtccctcaa agctctatgg 2651 caatcggtgt atcggtgtct tacttatacc tggacaccta atggctattt 2701 ggtaattttg taaaagtaca ttgcaattca aaattcaaaa ttcaaaaatc 2751 aaatcattaa agcggccatc cgtataatat t