Sequence of DPV Tomato yellow leaf curl virus

Tomato yellow leaf curl virus strain HBYQ, complete genome.

ACC No: JQ038232

Dated: 2012-02-12 | Length: 2781 | CRC: 586165243

                
ID   JQ038232; SV 1; circular; genomic DNA; STD; VRL; 2781 BP.
XX
AC   JQ038232;
XX
DT   12-FEB-2012 (Rel. 111, Created)
DT   12-FEB-2012 (Rel. 111, Last updated, Version 1)
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DE   Tomato yellow leaf curl virus strain HBYQ, complete genome.
XX
KW   .
XX
OS   Tomato yellow leaf curl virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2781
RA   Zhu X., Liu W.;
RT   ;
RL   Submitted (16-NOV-2011) to the INSDC.
RL   Department of Plant Pathology, Shandong Agricultural University, No. 61,
RL   Daizong Street, Tai'an, Shandong 271018, China
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2781
FT                   /organism="Tomato yellow leaf curl virus"
FT                   /host="Lycopersicon esculentum"
FT                   /strain="HBYQ"
FT                   /mol_type="genomic DNA"
FT                   /country="China:Yongqing, Hebei province"
FT                   /collected_by="Zhu Xiao-ping and Liu Wen-hao"
FT                   /collection_date="Aug-2011"
FT                   /db_xref="taxon:10832"
FT   CDS             148. .498
FT                   /codon_start=1
FT                   /product="AV2 protein"
FT                   /protein_id="AEZ67152.1"
FT                   /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEEINEPNTLGHDLIRDL
FT                   ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV
FT                   PEAQNIQNVSKP"
FT   CDS             308. .1084
FT                   /codon_start=1
FT                   /product="AV1 protein"
FT                   /protein_id="AEZ67153.1"
FT                   /translation="MSKRPGDIIISTPASKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW
FT                   TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH
FT                   RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDN
FT                   EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE
FT                   NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN"
FT   CDS             complement(1081. .1485)
FT                   /codon_start=1
FT                   /product="AC3 protein"
FT                   /protein_id="AEZ67154.1"
FT                   /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNNDI
FT                   ISIQIRFNHNIRKALGIHKCFLNFRIWTTLQPQTGRFLRVFRYQVLKYLDSLGVISINN
FT                   VIRAVDHVLYDVLENTINVTETHDIKYKFY"
FT   CDS             complement(1226. .1633)
FT                   /codon_start=1
FT                   /product="AC2 protein"
FT                   /protein_id="AEZ67155.1"
FT                   /translation="MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHI
FT                   NCNNHGFTHRGTHHCSSSREWRFYLGDKQSPLFQDNRTQPEAISNEQRHHFHSDKIQPQ
FT                   HQEGIGDSQMFSQLPNLDDITASDWSFLKSI"
FT   CDS             complement(1542. .2615)
FT                   /codon_start=1
FT                   /product="AC1 protein"
FT                   /protein_id="AEZ67156.1"
FT                   /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLKNLETPTNKKYIKVC
FT                   RELHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK
FT                   DGDFIDFGVFQIDGRSTRGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL
FT                   SSNLDRIFSPPLEIYVSPFLSSSFNQVPDELDEWVAENVVSSAARPWRPISIVIEGDSR
FT                   TGKTMWARSLGPHNYLCGHLDLSPKVYSNDVWYNVIDDVDPHYLKHFKEFMGAQRDWQS
FT                   NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPLFA
FT                   SINQGSTQDSQEETNKA"
FT   CDS             complement(2171. .2464)
FT                   /codon_start=1
FT                   /product="AC4 protein"
FT                   /protein_id="AEZ67157.1"
FT                   /translation="MGNHISMCLSNSKANTNVRTNGSSTWYPQTGQHISIRTFRQLRAQ
FT                   QMSRPTWRKTETSLILEFSKSMADQLEEVNNLPTTHMPRHSIQAVNPRPSIY"
XX
SQ   Sequence 2781 BP; 757 A; 528 C; 609 G; 887 T; 0 other;

jq038232 Length: 2781  12-FEB-2012  Type: N  Check: 5881  ..

       1  accggatggc cgcgccttct ctttttatgt ggtccccacg agggttccac
      51  atacgttact gtcaaccaat caaattgcat cctcaaacgt tagataagtg
     101  ttcatttgtc tttatatact tggtccccaa gtagtttgtc ttgcactatg
     151  tgggatccac ttctaaatga atttcctgaa tctgttcacg gatttcgttg
     201  tatgttagct attaaatatt tgcagtccgt tgaggaaatt aacgagccca
     251  atacattggg ccacgattta attagggatc ttatatctgt tgtaagggcc
     301  cgtgactatg tcgaagcgac caggcgatat aatcatttcc acgcccgcct
     351  cgaaggttcg ccgaaggctg aacttcgaca gcccatacag cagccgtgct
     401  gctgtcccca ttgtccaagg cacaaacaag cgacgatcat ggacgtacag
     451  gcccatgtac cggaagccca gaatatacag aatgtatcga agccctgatg
     501  ttcctcgtgg atgtgaaggc ccatgtaaag tccagtctta tgagcaacgg
     551  gatgatatta agcatactgg tattgttcgt tgtgttagtg atgttactcg
     601  tggatctgga attactcaca gagtgggtaa gaggttctgt gttaaatcga
     651  tatatttttt aggtaaagtc tggatggatg aaaatatcaa gaagcagaat
     701  cacactaatc aggtcatgtt cttcttggtt cgtgatagaa ggccctatgg
     751  aaacagccca atggattttg gacaggtttt taatatgttc gataatgagc
     801  ccagtaccgc aactgtgaag aatgatttgc gggataggtt tcaagtgatg
     851  aggaaatttc atgctacagt tattggtggg ccctctggaa tgaaggaaca
     901  ggcattagtt aagagatttt ttagaattaa cagtcatgta acttataatc
     951  atcaggaggc agccaagtat gagaaccata ctgaaaacgc cttgttattg
    1001  tatatggcat gtacgcatgc ctctaatcca gtgtatgcaa ctatgaaaat
    1051  acgcatctat ttctatgatt caatatcaaa ttaataaaat ttatatttta
    1101  tatcatgagt ttctgttaca tttattgtgt tttcaagtac atcatacaat
    1151  acatgatcaa ctgctctgat tacattgtta attgaaatta caccaagact
    1201  atctaaatac ttaagaactt gatatctaaa tactcttaag aaacgaccag
    1251  tctgaggctg taatgtcgtc caaattcgga agttgagaaa acatttgtga
    1301  atccccaatg ccttcctgat gttgtggttg aatcttatct gaatggaaat
    1351  gatgtcgttg ttcattagaa atggcctctg gctgtgttct gttatcttga
    1401  aatagagggg attgtttatc tcccagataa aaacgccatt ctctgcttga
    1451  ggagcagtga tgagttcccc tgtgcgtgaa tccatgattg ttgcagttga
    1501  tgtggaggta gtatgagcag ccacagtcta ggtctacacg cttacgcctt
    1551  attggtttct tcttggctat cttgtgttga accttgattg atacttgcga
    1601  acagtggctc gtagagggtg acgaaggttg cattcttgag agcccaattt
    1651  ttcaaggata tgtttttttc ttcgtctaga tattccctat atgaggaggt
    1701  aggtcctgga ttgcagagga agatagtggg aattccccct ttaatttgaa
    1751  tgggcttccc gtactttgtg ttgctttgcc agtccctctg ggcccccatg
    1801  aattccttga agtgctttaa ataatgcggg tctacgtcat caatgacgtt
    1851  gtaccacaca tcattactgt acacctttgg gcttaggtct agatgtccac
    1901  ataaataatt atgtgggcct agagacctgg cccacattgt tttgcctgtt
    1951  ctgctatcac cctcaatgac aatacttatg ggtctccatg gccgcgcagc
    2001  ggaagatacg acgttctcgg cgacccactc gtcaagttca tctggaactt
    2051  gattaaaaga agaagaaaga aatggagaaa cataaatttc taaaggagga
    2101  ctaaaaatcc tatctaaatt tgaacttaaa ttatgaaatt gtaaaatata
    2151  gtcctttggg gccttctctt ttaatatatt gagggcctcg gatttactgc
    2201  ctgaattgag tgcctcggca tatgcgtcgt tggcagattg ttgacctcct
    2251  ctagttgatc tgccatcgat ttggaaaact ccaaaatcaa tgaagtctcc
    2301  gtctttctcc acgtaggtct tgacatctgt tgagctctta gctgcctgaa
    2351  tgttcggatg gaaatgtgct gacctgtttg gggataccag gtcgaagaac
    2401  cgttggttct tacattggta tttgccttcg aattggataa gcacatggag
    2451  atgtggttcc ccattctcgt ggagttctct gcaaactttg atgtattttt
    2501  tatttgttgg ggtttctagg ttttttaatt gggaaagtgc ttcctcttta
    2551  gagagagaac aattgggata tgttaggaaa taatttttgg catatatttt
    2601  aaataaacga ggcatgttga aatgaattgg tgtccctcaa agctctatgg
    2651  caatcggtgt atcggtgtct tacttatacc tggacaccta atggctattt
    2701  ggtaattttg taaaagtaca ttgcaattca aaattcaaaa ttcaaaaatc
    2751  aaatcattaa agcggccatc cgtataatat t