Sequence of DPV Pata virus
Pata virus isolate CAF1968/01 segment 5, complete sequence.
ACC No: JQ070390
Dated: 2012-04-15 | Length: 1785 | CRC: -1194598702
ID JQ070390; SV 1; linear; genomic RNA; STD; VRL; 1785 BP. XX AC JQ070390; XX DT 15-APR-2012 (Rel. 112, Created) DT 15-APR-2012 (Rel. 112, Last updated, Version 1) XX DE Pata virus isolate CAF1968/01 segment 5, complete sequence. XX KW . XX OS Pata virus OC Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Orbivirus. XX RN [1] RC Publication Status: Online-Only RP 1-1785 RX PUBMED; 22438872. RA Belaganahalli M.N., Maan S., Maan N.S., Nomikou K., Pritchard I., Lunt R., RA Kirkland P.D., Attoui H., Brownlie J., Mertens P.P.; RT "Full Genome Sequencing and Genetic Characterization of Eubenangee Viruses RT Identify Pata Virus as a Distinct Species within the Genus Orbivirus"; RL PLoS One 7(3):E31911-E31911(2012). XX RN [2] RP 1-1785 RA Belaganahalli M.N., Maan S., Maan N.S., Nomikou K., Mertens P.P.C.; RT ; RL Submitted (22-NOV-2011) to the INSDC. RL Vector-borne Viral Diseases Programme, Institute for Animal Health, RL Pirbright laboratory, Ash Road Pirbright, Woking, Surrey GU24 0NF, United RL Kingdom XX CC GenBank Accession Numbers JQ070386-JQ070395 represent the complete CC genome of Pata virus isolate CAF1968/01. XX FH Key Location/Qualifiers FH FT source 1. .1785 FT /organism="Pata virus" FT /segment="5" FT /host="Aedes palpalis" FT /isolate="CAF1968/01" FT /mol_type="genomic RNA" FT /country="Central African Republic" FT /collected_by="J.P. Digoutte and F.X. Pajot" FT /collection_date="1968" FT /db_xref="taxon:1170506" FT CDS 33. .1688 FT /codon_start=1 FT /product="NS1" FT /note="tubule protein; TuP" FT /protein_id="AFH41523.1" FT /translation="MERFIKKFNIIGEEANAIRLFYHISEQWTCSHLRRDCFINGLCAK FT QNFKAAIDLILDHDDVPAAHRLVMIAKNVLADRETVWLQSYRSFSQPYEEEVERKINIM FT GVQLLEHYQTSGMMEEAGKLEAQKRGERIRLDDSFAALPYLYIPIAHHQILNPLRVMRF FT RQIGYYFYNPEFADDWIPPDAYAIRSQRFRICRGIQERIPVCLETGFKGPVFQVMFLPV FT SMLPMFEDQQFRKHINWYMSAAVKVYLQIGTNEERRFALQLFGMCPAGESPIHQMMLGR FT IIAGGRETNLVALRSRIQGNMSWESWLLPMFLVRVAVQERAFYDDVEKFMRMGFKCQLC FT YMKTECLRENAYYTDVRTSEMLGVPITRAITIREHVSSAESMVKFSVTGSEHIGRIGDH FT YFTCEVHSSMEALIFTLTQIHKWIRGSGIWSGTQWREGIYMLARLLIRWPLTKKQISAA FT YRLFCFVCYGYAPRRDGSLPNWDDLGKFLDIILNGPELNMAESEQAFALMFDLGRYIIM FT IECAARTQIPGFAAPECDEGEIQNLTELLATMWQ" XX SQ Sequence 1785 BP; 506 A; 314 C; 442 G; 523 T; 0 other; jq070390 Length: 1785 15-APR-2012 Type: N Check: 8542 .. 1 gtaaaaaagt tctttcgttg gctgccacca agatggagcg ttttattaaa 51 aaattcaata taattggaga agaagcgaat gcaattcggc tattttatca 101 tatttcagaa cagtggacgt gctcccattt gcgccgagac tgttttatca 151 atgggttatg tgcaaaacaa aatttcaaag cagcaattga tttgattctt 201 gatcatgatg acgttccggc ggcgcacaga ttggtcatga ttgcaaagaa 251 tgttctagct gatagggaga cggtctggtt acaaagctat cgtagctttt 301 ctcagcctta tgaggaggaa gtggaaagga aaatcaacat aatgggggtg 351 cagcttcttg aacactatca aactagtggt atgatggaag aggcaggtaa 401 gcttgaagca cagaaacggg gtgaaagaat caggctggat gatagctttg 451 ctgccctacc ttatctctac atacctatcg cgcatcatca gatcttgaat 501 cctctacgtg tgatgagatt ccgtcagatt ggctattatt tctacaaccc 551 ggaatttgca gatgattgga ttccaccaga tgcatatgct attaggagtc 601 agcgattccg gatttgtaga ggaatacaag agaggattcc ggtatgttta 651 gaaacaggat tcaaggggcc agttttccag gttatgttcc taccagtgtc 701 gatgctaccg atgtttgaag atcaacagtt tcgcaaacac ataaactggt 751 atatgtcagc tgcagtaaaa gtttatttac aaattggaac aaatgaggaa 801 cgtcgatttg ctctgcaatt gtttggaatg tgtccagcgg gtgaatcacc 851 aatacatcag atgatgttgg gaagaataat tgcaggcgga cgtgaaacaa 901 atctggtagc attaagatca cggattcaag ggaacatgag ttgggagagc 951 tggttgttgc caatgttctt ggttcgtgtt gcggtccagg aacgtgcatt 1001 ctatgatgat gttgaaaagt ttatgcggat gggtttcaaa tgtcagctat 1051 gctacatgaa gactgagtgc cttagggaga acgcttacta tacggatgta 1101 cgcacaagtg agatgctagg tgttcctatt acacgagcga tcacaattag 1151 agagcacgta agcagtgcag agtcgatggt taaattttct gttacaggta 1201 gtgaacacat cggaagaatt ggtgatcatt atttcacttg tgaggtgcat 1251 tcaagtatgg aagctctgat cttcacttta actcagattc ataaatggat 1301 ccgtggttca ggtatttggt ctggaactca gtggcgtgag ggaatctata 1351 tgcttgctag attattaatt cgatggccat tgacaaagaa gcagatcagt 1401 gcggcatatc ggttgttctg tttcgtttgt tatggttatg cgccacgccg 1451 agatggaagc ttgccaaact gggatgatct gggtaagttt ttggatatta 1501 tcttgaatgg acctgaactc aacatggcgg aatcagaaca agccttcgct 1551 ttgatgtttg atcttggacg ctacatcatc atgatcgagt gcgccgctag 1601 gacacagata ccaggatttg ccgcaccaga atgtgatgaa ggcgaaattc 1651 aaaatttgac tgaattgctt gcgaccatgt ggcagtgatg ttagaacttt 1701 tgaaccgaca ttgattttta tcttctcagt tttctttatt taactataac 1751 ttgtaaggcg aactccatca gagctttaca cttac