Sequence of DPV Pata virus

Pata virus isolate CAF1968/01 segment 5, complete sequence.

ACC No: JQ070390

Dated: 2012-04-15 | Length: 1785 | CRC: -1194598702

                
ID   JQ070390; SV 1; linear; genomic RNA; STD; VRL; 1785 BP.
XX
AC   JQ070390;
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DT   15-APR-2012 (Rel. 112, Created)
DT   15-APR-2012 (Rel. 112, Last updated, Version 1)
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DE   Pata virus isolate CAF1968/01 segment 5, complete sequence.
XX
KW   .
XX
OS   Pata virus
OC   Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Orbivirus.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-1785
RX   PUBMED; 22438872.
RA   Belaganahalli M.N., Maan S., Maan N.S., Nomikou K., Pritchard I., Lunt R.,
RA   Kirkland P.D., Attoui H., Brownlie J., Mertens P.P.;
RT   "Full Genome Sequencing and Genetic Characterization of Eubenangee Viruses
RT   Identify Pata Virus as a Distinct Species within the Genus Orbivirus";
RL   PLoS One 7(3):E31911-E31911(2012).
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RN   [2]
RP   1-1785
RA   Belaganahalli M.N., Maan S., Maan N.S., Nomikou K., Mertens P.P.C.;
RT   ;
RL   Submitted (22-NOV-2011) to the INSDC.
RL   Vector-borne Viral Diseases Programme, Institute for Animal Health,
RL   Pirbright laboratory, Ash Road Pirbright, Woking, Surrey GU24 0NF, United
RL   Kingdom
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CC   GenBank Accession Numbers JQ070386-JQ070395 represent the complete
CC   genome of Pata virus isolate CAF1968/01.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1785
FT                   /organism="Pata virus"
FT                   /segment="5"
FT                   /host="Aedes palpalis"
FT                   /isolate="CAF1968/01"
FT                   /mol_type="genomic RNA"
FT                   /country="Central African Republic"
FT                   /collected_by="J.P. Digoutte and F.X. Pajot"
FT                   /collection_date="1968"
FT                   /db_xref="taxon:1170506"
FT   CDS             33. .1688
FT                   /codon_start=1
FT                   /product="NS1"
FT                   /note="tubule protein; TuP"
FT                   /protein_id="AFH41523.1"
FT                   /translation="MERFIKKFNIIGEEANAIRLFYHISEQWTCSHLRRDCFINGLCAK
FT                   QNFKAAIDLILDHDDVPAAHRLVMIAKNVLADRETVWLQSYRSFSQPYEEEVERKINIM
FT                   GVQLLEHYQTSGMMEEAGKLEAQKRGERIRLDDSFAALPYLYIPIAHHQILNPLRVMRF
FT                   RQIGYYFYNPEFADDWIPPDAYAIRSQRFRICRGIQERIPVCLETGFKGPVFQVMFLPV
FT                   SMLPMFEDQQFRKHINWYMSAAVKVYLQIGTNEERRFALQLFGMCPAGESPIHQMMLGR
FT                   IIAGGRETNLVALRSRIQGNMSWESWLLPMFLVRVAVQERAFYDDVEKFMRMGFKCQLC
FT                   YMKTECLRENAYYTDVRTSEMLGVPITRAITIREHVSSAESMVKFSVTGSEHIGRIGDH
FT                   YFTCEVHSSMEALIFTLTQIHKWIRGSGIWSGTQWREGIYMLARLLIRWPLTKKQISAA
FT                   YRLFCFVCYGYAPRRDGSLPNWDDLGKFLDIILNGPELNMAESEQAFALMFDLGRYIIM
FT                   IECAARTQIPGFAAPECDEGEIQNLTELLATMWQ"
XX
SQ   Sequence 1785 BP; 506 A; 314 C; 442 G; 523 T; 0 other;

jq070390 Length: 1785  15-APR-2012  Type: N  Check: 8542  ..

       1  gtaaaaaagt tctttcgttg gctgccacca agatggagcg ttttattaaa
      51  aaattcaata taattggaga agaagcgaat gcaattcggc tattttatca
     101  tatttcagaa cagtggacgt gctcccattt gcgccgagac tgttttatca
     151  atgggttatg tgcaaaacaa aatttcaaag cagcaattga tttgattctt
     201  gatcatgatg acgttccggc ggcgcacaga ttggtcatga ttgcaaagaa
     251  tgttctagct gatagggaga cggtctggtt acaaagctat cgtagctttt
     301  ctcagcctta tgaggaggaa gtggaaagga aaatcaacat aatgggggtg
     351  cagcttcttg aacactatca aactagtggt atgatggaag aggcaggtaa
     401  gcttgaagca cagaaacggg gtgaaagaat caggctggat gatagctttg
     451  ctgccctacc ttatctctac atacctatcg cgcatcatca gatcttgaat
     501  cctctacgtg tgatgagatt ccgtcagatt ggctattatt tctacaaccc
     551  ggaatttgca gatgattgga ttccaccaga tgcatatgct attaggagtc
     601  agcgattccg gatttgtaga ggaatacaag agaggattcc ggtatgttta
     651  gaaacaggat tcaaggggcc agttttccag gttatgttcc taccagtgtc
     701  gatgctaccg atgtttgaag atcaacagtt tcgcaaacac ataaactggt
     751  atatgtcagc tgcagtaaaa gtttatttac aaattggaac aaatgaggaa
     801  cgtcgatttg ctctgcaatt gtttggaatg tgtccagcgg gtgaatcacc
     851  aatacatcag atgatgttgg gaagaataat tgcaggcgga cgtgaaacaa
     901  atctggtagc attaagatca cggattcaag ggaacatgag ttgggagagc
     951  tggttgttgc caatgttctt ggttcgtgtt gcggtccagg aacgtgcatt
    1001  ctatgatgat gttgaaaagt ttatgcggat gggtttcaaa tgtcagctat
    1051  gctacatgaa gactgagtgc cttagggaga acgcttacta tacggatgta
    1101  cgcacaagtg agatgctagg tgttcctatt acacgagcga tcacaattag
    1151  agagcacgta agcagtgcag agtcgatggt taaattttct gttacaggta
    1201  gtgaacacat cggaagaatt ggtgatcatt atttcacttg tgaggtgcat
    1251  tcaagtatgg aagctctgat cttcacttta actcagattc ataaatggat
    1301  ccgtggttca ggtatttggt ctggaactca gtggcgtgag ggaatctata
    1351  tgcttgctag attattaatt cgatggccat tgacaaagaa gcagatcagt
    1401  gcggcatatc ggttgttctg tttcgtttgt tatggttatg cgccacgccg
    1451  agatggaagc ttgccaaact gggatgatct gggtaagttt ttggatatta
    1501  tcttgaatgg acctgaactc aacatggcgg aatcagaaca agccttcgct
    1551  ttgatgtttg atcttggacg ctacatcatc atgatcgagt gcgccgctag
    1601  gacacagata ccaggatttg ccgcaccaga atgtgatgaa ggcgaaattc
    1651  aaaatttgac tgaattgctt gcgaccatgt ggcagtgatg ttagaacttt
    1701  tgaaccgaca ttgattttta tcttctcagt tttctttatt taactataac
    1751  ttgtaaggcg aactccatca gagctttaca cttac