Sequence of DPV Swine pasivirus 1

Swine pasivirus 1, complete genome.

ACC No: JQ316470

Dated: 2012-08-28 | Length: 6916 | CRC: -31078445

                
ID   JQ316470; SV 1; linear; genomic RNA; STD; VRL; 6916 BP.
XX
AC   JQ316470;
XX
DT   22-JUL-2012 (Rel. 113, Created)
DT   28-AUG-2012 (Rel. 113, Last updated, Version 2)
XX
DE   Swine pasivirus 1, complete genome.
XX
KW   .
XX
OS   Swine pasivirus 1
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales;
OC   Picornaviridae; Pasivirus.
XX
RN   [1]
RP   1-6916
RX   PUBMED; 22787214.
RA   Sauvage V., Ar Gouilh M., Cheval J., Muth E., Pariente K., Burguiere A.,
RA   Caro V., Manuguerra J.C., Eloit M.;
RT   "A member of a new Picornaviridae genus is shed in pig feces";
RL   J. Virol. 86(18):10036-10046(2012).
XX
RN   [2]
RP   1-6916
RA   Sauvage V., Ar Gouilh M., Cheval J., Eloit M.;
RT   ;
RL   Submitted (22-DEC-2011) to the INSDC.
RL   Laboratory for Urgent Response to Biological Threats (CIBU), Institut
RL   Pasteur, 28 rue du Dr Roux, Paris 75724 CEDEX 15, France
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .6916
FT                   /organism="Swine pasivirus 1"
FT                   /host="Sus scrofa"
FT                   /mol_type="genomic RNA"
FT                   /country="France"
FT                   /isolation_source="porcine stool"
FT                   /collection_date="2010"
FT                   /db_xref="taxon:1210913"
FT   5'UTR           1. .378
FT   CDS             379. .6780
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="AFN70966.1"
FT                   /translation="MDVVVDTLTKEVSQTLLGDTAESGGGFGGVLSGSATTNAANIVQH
FT                   SAAPTAPANPVLDANDPYEACAYSKETSRETPSKMVLLDIVHFDNTWVWGGNDKLQLPL
FT                   PKCFWKNRSFPAYGTSRYFQFFRGSFHIKIQVNAAAGSAGSFVVVYVPNDHYQSWNNKD
FT                   LILHTMFNWPHVIFNVATMTEADLYIPYINTHNLANTDSSDCGWVVVTPFTHLEVASTT
FT                   TNTLDIAVFGSLVDFQFQGPRPYTDLPSDSQGPKRVARNKKYKYTRNKIDIAEGPGSMN
FT                   IANVLSTTAAQSIALVGERAFIDPSVAGTRVRVRTFRDVTKIKALPLLPFTASHSEYCI
FT                   FDWQASHAPTTKSPIFGRGYKIRELGNLGPLSTAYQFWRGSIIFTLTIFASSFHRGRLR
FT                   IVLFPNGTHSFSQDDANALIFTVCDIGEQSSFDITLPFTHYNWIRECDNSVVVLVNVYV
FT                   ETRLAHNNASSNVIKCALFVRGGEDFEFLAPCGDTVKFHGWGSDMDEADPLDDMEPGHP
FT                   DCLTLESKDGSSGKGPQCAQMAGLTSVENDGTTDNQLNCAAPKFINIHKLTTSIFAKDH
FT                   MHLDYFFGRGWYVMKHNYEGESRAPFYIDVDAPSSMPGAAMNFFSFWAGEVNFHVVNNS
FT                   DDPMAVTHSYSHEASTVGPAEGLGLIIVPPREMISFAAPFYSWSPLRTVLAHQNSAVKR
FT                   TFGILKLVPEAPKGQVIVYASLRTPCFFLVKPFPIQTTAAKMAVYPSKLTSAEEAEELK
FT                   FKLVHEPYEQFFIPHYGDIPSFQRDFINWLGSKEELQNMILQCGDVEQNPGPVLMYDGN
FT                   KKFCVPVCNGYLTFHGSPEQFLVSGNGTLIIYKEVYGMLPYEEAYPEDLSSNWHIEWQC
FT                   VNGKVDSLVKRMANWMLLRYIDLVIFGGTWRRLLAPNTDMKFDSQGVDDMMNSLTGLLN
FT                   SSAMELLGNDVSKSILCCLVRFVAVLVMFFRNPDLINGVALASYLASEFSSVRLVSSQT
FT                   AAFVDALFNGDLYKLSEQFLSMMDIGSDSDYKQLIKETLGSYPPEMNPFESQSLAAFNA
FT                   LSLSARNCTWWIELFQKLHTFVRDLLKPDTSAKFHEWCRKNKMLISNFMYTLNEHLKDC
FT                   ATTCNLRKREFRDKHKWLLSVLNRLTEGFTTYGVQNDITRALLDMRKSMLAVKLGQEYQ
FT                   NTCAREEPLGVLLRGEPGQGKSFMTHLLVRSVCNAMGWKVSESVFSHPTSSEFFDGYAG
FT                   QPIHLIDDFGQNVEEPEYKVLCQCMSSIPFSVPMASLEEKGLPYTSKLVIATTNKSDWS
FT                   SRTLCAPGALKRRFPIVYTVRARRTLTKNGLLDVNAHMSAVRDGAAWEYTTNGYDWQPF
FT                   SVNDLAAEIIKQLEQRRESFQLWNSFISQAPETFEAWCDDMVSLLGPAVPVASVFDYCA
FT                   STGVVPMLKQASESVLKWFDSCVDSMVSFVTRNKKWIAFGALTMSVLGIAISMLKELDS
FT                   QRPYNQTAHKMPVTKLTRGRRVLVSQGPYNEFQHYSKYCVFLHSGSITLHGLAFGGNSF
FT                   LFYTHGLATLERYDNWVLDYNGSMFDLDIETVDELYLNGESMDLCLITCKPLPVTFASI
FT                   VGHLSDGDLGDGVILWRGREGLTCMPIYDLHHYGTVTTNQGDTCTSAIRYRAKTTRGMC
FT                   GGLVLSKISGTYKAVGLHVAGNGVYGVAASLSVCKQLESQGLVTDTKPWPGVRVHQPSK
FT                   SVLKPSPLYGFVEQELHPAVLSPFDNRLKCEVDSVIGRQALKYNSNVFNPGPYYDEVLE
FT                   AFAVDFNGRFGINEMMSAEEVFALSGDEAIELSTSPGLKYTSKGLRKRDLVPGGKACDL
FT                   LLSDVERLMNDPKGTPVYFYCHLKDELRPQEKIEQGLTRCIESSDFDYVFSAKRVFCKL
FT                   FRQLYDSDPIETGFAVGINCIADWKNLLDGMYDYIYDFDLKGYDGSIPRQLMIDACRVL
FT                   SESCSDEELAYNLLHKTVDSQHVVGNQLLTVSGGMASGSPFTTIVNTACNILANMTVLE
FT                   EEGVEYTLVCYGDDILVSTSDPISVNDYVDKMGQYFGFTVKLDGDYPKTKNNFTFLKRR
FT                   TTYWNGIPVGAMEVGLLLQHLGYCRSVSVFQDQLNSASIELALHGPETYNVLRSRVNSF
FT                   LNGTGFALMSYRRAAAVVGSMLS"
FT   mat_peptide     379. .1137
FT                   /product="VP0"
FT                   /note="capsid protein; uncleaved precursor of VP2+VP4"
FT   mat_peptide     1138. .1869
FT                   /product="VP3"
FT                   /note="capsid protein"
FT   mat_peptide     1870. .2739
FT                   /product="VP1"
FT                   /note="capsid protein"
FT   mat_peptide     2740. .2790
FT                   /product="2A1"
FT   mat_peptide     2791. .3126
FT                   /product="2A2"
FT   mat_peptide     3127. .3501
FT                   /product="2B"
FT   mat_peptide     3502. .4494
FT                   /product="2C"
FT   mat_peptide     4495. .4764
FT                   /product="3A"
FT   mat_peptide     4765. .4839
FT                   /product="3B"
FT   mat_peptide     4840. .5412
FT                   /product="3C"
FT                   /note="proteinase"
FT   mat_peptide     5413. .6777
FT                   /product="3D"
FT                   /note="RNA-dependent RNA polymerase"
FT   3'UTR           6781. .6916
XX
SQ   Sequence 6916 BP; 1709 A; 1331 C; 1648 G; 2228 T; 0 other;

jq316470 Length: 6916  28-AUG-2012  Type: N  Check: 9166  ..

       1  gcttttgacc agtggctctg ggttacttag ccaagtccct ttctcttatt
      51  ttcactagtt tatgttgtgt gttgtctgtt ttgttttgtt taaattgtat
     101  acaagatcct tcccgccgac acagacctcg acagtctggt gtaggagggt
     151  tggtgatatt aatttgcccc aaaagagtga ccgtgatacg tggaaaccat
     201  gagtacatgt gtatccgtgg aggatcgccc gggactggat tccatatccc
     251  attgccatcc caacaaacgg agggtatacc caccacgtgc gcgtttgcag
     301  tgggaatctg caaatttagt catactgcct gatagggtgt gggcctgcac
     351  tttggggtac tcaggctgtt catataatat ggatgttgtt gttgatactt
     401  taactaagga agtttctcaa acgttgcttg gtgatactgc tgaatctggc
     451  ggaggttttg gtggtgttct ttcgggatca gccaccacta atgcagcaaa
     501  tattgtccag catagtgctg ctcctacggc tcctgccaat cctgttttgg
     551  atgccaatga cccttatgaa gcatgtgcgt actcgaaaga gacctcacgc
     601  gaaactccgt ctaaaatggt tttgcttgac attgtgcatt ttgacaacac
     651  ctgggtatgg ggcggaaatg ataagttgca attgccatta cccaaatgct
     701  tttggaagaa tcggtcgttt cctgcttatg gcacatcacg atattttcag
     751  ttctttcgtg gttcgttcca tattaagatt caggtcaatg ctgctgcagg
     801  ttctgccggt tcttttgtcg ttgtctatgt gccaaatgac cattatcaga
     851  gttggaataa taaggatttg atactccata caatgtttaa ttggccacat
     901  gtcattttta atgtggcgac tatgactgag gcagatttgt acattcctta
     951  cattaatacc cacaatcttg ctaacactga ttcttctgac tgcgggtggg
    1001  tggtagttac accttttacg cacttggaag tagctagcac cactactaat
    1051  acactggaca ttgctgtttt cgggtctttg gttgattttc aattccaagg
    1101  cccaaggcca tataccgatt tacctagtga ttctcagggg cccaagcgtg
    1151  ttgcccgcaa taagaaatat aagtacacac gcaacaaaat tgatattgct
    1201  gaagggcctg gatcaatgaa catcgccaat gtacttagca caacagccgc
    1251  ccaatcgata gctttggttg gtgaacgtgc ttttattgat cctagtgttg
    1301  caggcacgag agtgagagtc cgcacgtttc gtgatgtaac aaaaattaaa
    1351  gcattacctt tgctaccgtt cacagcttca catagtgaat attgtatttt
    1401  tgattggcag gctagccatg ctccaacaac caagtctccg atttttgggc
    1451  gtggctataa gatacgagag cttggtaatt tgggtccatt gtcaacagcc
    1501  tatcagtttt ggcgtggttc tattattttc actctcacca tttttgctag
    1551  cagttttcac cgtggcaggc ttagaattgt cttgtttcca aatggaaccc
    1601  acagttttag tcaggatgat gccaatgcgt tgatatttac tgtctgtgac
    1651  attggtgaac aatcctcatt tgatattact ttgccattta ctcattacaa
    1701  ttggattagg gaatgtgata attctgtagt tgtcctggtc aacgtgtatg
    1751  ttgaaacccg attggctcac aataatgcat cttccaacgt tataaaatgc
    1801  gcactttttg tgcgtggcgg cgaggatttt gagttcttgg cgccatgcgg
    1851  tgacactgtc aagttccatg gttggggatc ggatatggat gaagctgatc
    1901  ctttggatga catggaacca ggacatcctg attgtcttac attggaatct
    1951  aaagatggga gtagtggtaa agggccccag tgtgcgcaga tggctggatt
    2001  aacaagtgtg gagaatgatg gcacaactga taaccaactt aattgtgcag
    2051  cacctaagtt tatcaatatc cataagctga ctacttcaat atttgccaaa
    2101  gatcatatgc accttgatta tttctttggt cgtggatggt atgtcatgaa
    2151  acataactat gagggcgaga gccgtgcccc tttttatatt gatgtggatg
    2201  ctccatcgtc tatgccaggc gctgcaatga atttcttttc tttctgggct
    2251  ggggaggtta acttccatgt tgtcaacaat agtgatgacc caatggctgt
    2301  cactcatagt tattcgcatg aggctagcac tgttggtccc gctgaaggtc
    2351  tagggttgat aattgtgccg cctcgtgaga tgatatcatt tgcagcccct
    2401  ttctattcct ggtcgccatt gcggactgtg cttgctcacc aaaatagtgc
    2451  agttaagcgc acgtttggca ttttgaagtt agtgcctgag gctccaaaag
    2501  gacaggtcat tgtttatgca tcacttagaa ctccatgctt cttcttagtc
    2551  aagccatttc ctatacagac aactgcagct aagatggctg tgtatccatc
    2601  aaagctgaca tcagctgagg aggcagagga gctaaagttc aaattggtgc
    2651  atgagcctta tgagcagttt tttatccccc attatgggga tattcctagt
    2701  tttcaaaggg attttattaa ttggctaggc agtaaagaag aattacaaaa
    2751  catgatatta caatgtggag atgtggaaca aaatcctggc cctgtcttga
    2801  tgtatgatgg taataagaaa ttttgtgtcc cagtctgcaa tggttatttg
    2851  acttttcatg gcagtcccga acagttcttg gtgagtggta atggcacact
    2901  catcatttat aaagaagttt atggaatgct tccttacgaa gaggcttacc
    2951  cagaggatct gtctagcaat tggcatattg aatggcagtg tgtcaatggc
    3001  aaggttgatt ctttggttaa gaggatggct aattggatgt tgctgcgtta
    3051  tattgatcta gttatctttg gtggcacttg gagaaggttg ctcgccccca
    3101  acacagatat gaaatttgac tcccagggag ttgatgacat gatgaattct
    3151  ttgactgggc tgcttaattc ttctgctatg gagttgctgg gtaatgatgt
    3201  ttcaaaatct atattgtgct gtctggtccg ctttgttgcg gtgcttgtca
    3251  tgttttttcg taatcctgac cttattaatg gagttgcact ggcatcttat
    3301  ttagcctctg aattttctag tgtaagactt gtgtcgtctc aaacagccgc
    3351  ttttgtggat gcccttttta atggtgattt gtataaactc tctgaacaat
    3401  tcctttcaat gatggatatt ggttctgatt ctgactataa acaattaatc
    3451  aaggagacgt tgggatcgta ccctcctgaa atgaacccat ttgagtcaca
    3501  gagtttggct gcatttaatg ctttgtcctt gagtgctcgt aattgtacat
    3551  ggtggattga gctcttccag aaattgcaca cgttcgtgcg tgacttattg
    3601  aaaccagata cttcggcaaa gtttcatgaa tggtgtagga aaaataagat
    3651  gctcatttcc aattttatgt atactcttaa tgagcatttg aaggattgtg
    3701  ccaccacctg caatttgcgt aagagggaat ttagagacaa gcataagtgg
    3751  ttgttatctg ttcttaatcg ccttactgag ggttttacca cgtatggggt
    3801  acagaatgat atcacacgag cattgttgga catgcgtaag agcatgttag
    3851  ctgttaagct agggcaagaa tatcagaata cgtgtgctcg tgaggagccc
    3901  cttggtgtgc tgctacgtgg cgaacctgga caaggaaaat cctttatgac
    3951  acatctgctc gtgcgtagtg tttgcaatgc tatgggctgg aaggtttctg
    4001  agagtgtgtt tagccaccct acatcaagtg agttctttga tgggtatgct
    4051  gggcaaccga ttcatcttat cgatgatttt gggcagaatg tggaggaacc
    4101  tgaatataaa gttttgtgcc agtgtatgtc ttccatacca ttttctgtgc
    4151  ctatggcttc gcttgaggaa aagggtttgc cttatacttc aaagttagtt
    4201  attgccacga caaataaatc agattggtca tctcgtacct tgtgcgctcc
    4251  aggtgctttg aagcgccggt ttcctattgt ttataccgtt cgcgcacgga
    4301  ggactttaac caagaatggc cttcttgatg tcaacgcaca tatgagtgca
    4351  gtgcgcgatg gagcagcatg ggagtatact accaatggtt atgactggca
    4401  acccttttct gttaatgatc ttgctgctga aataattaaa cagttagagc
    4451  agcgtaggga atcttttcaa ctctggaatt cttttattag tcaggctcct
    4501  gaaacttttg aggcttggtg tgatgatatg gtgtcccttc ttggccctgc
    4551  tgttccagtt gcttcagtgt tcgactattg cgctagcact ggtgttgtac
    4601  ccatgttaaa gcaagcgtcg gaatctgtcc ttaagtggtt tgattcgtgt
    4651  gttgacagca tggtgtcgtt tgttacacgt aacaaaaagt ggattgcttt
    4701  tggtgcttta actatgagtg tgttaggtat tgctatatct atgcttaagg
    4751  aattggacag ccagcgtccc tataatcaga ccgcccataa gatgcctgtt
    4801  actaagctca cgcgtgggcg acgtgtgctt gtttcccaag gcccttataa
    4851  tgaattccag cattattcta aatactgtgt ttttctccat tctgggtcta
    4901  ttacacttca tggccttgca tttggtggta attctttttt gttttacaca
    4951  catggccttg ctactcttga gcgctatgat aattgggtgc ttgactataa
    5001  tgggtccatg tttgatttag atattgaaac tgtggatgag ttatacttga
    5051  atggagagtc catggacctt tgtcttatca cctgcaagcc tttacctgtt
    5101  acttttgcta gcatcgtggg ccatttgtct gatggagacc ttggagatgg
    5151  tgtcatcttg tggcgaggtc gagagggcct aacatgtatg ccaatttatg
    5201  accttcacca ttatggcact gtcaccacta accaaggaga tacatgcaca
    5251  tcagcaatac gctaccgtgc aaaaacgaca cgcggtatgt gtggtggcct
    5301  tgttttgtct aaaattagtg gcacttataa agctgttggt ttgcatgttg
    5351  ctggaaatgg tgtttatggt gttgcagcaa gtctgagtgt gtgtaagcag
    5401  cttgaaagtc aaggactagt caccgacacc aaaccatggc ctggtgtgcg
    5451  tgtacatcaa ccttcaaaga gtgttctaaa gccctctcca ctttatggct
    5501  ttgtcgaaca ggagctccac ccagcggtgt tgagcccgtt tgacaatcgc
    5551  ctgaagtgtg aggttgactc tgtgattggc agacaagctt tgaaatacaa
    5601  ttcaaatgtt tttaatcctg gaccttacta tgatgaagtg cttgaggcgt
    5651  tcgcagttga ttttaatggc aggtttggta ttaatgaaat gatgtcagct
    5701  gaagaggtct ttgccctatc tggtgacgaa gcgatcgagc tttctacctc
    5751  acctggttta aagtatacta gtaagggctt gagaaagagg gatctcgtgc
    5801  ctggtggcaa ggcatgtgac ctattattga gtgatgttga acgccttatg
    5851  aatgatccaa aaggaactcc tgtctacttc tactgtcacc ttaaagatga
    5901  gcttaggccc caagagaaga ttgaacaagg ccttacaagg tgcattgaaa
    5951  gtagcgattt tgactatgtt tttagtgcca aaagagtctt ttgcaagctg
    6001  ttccggcaac tttatgattc tgaccctatt gagactggat ttgctgttgg
    6051  tatcaactgt attgctgact ggaagaattt gttggacggc atgtatgatt
    6101  acatttatga ttttgatctg aaaggatatg atggttctat accacgtcag
    6151  ctcatgatag atgcttgtcg tgtcttgagt gaaagttgta gtgatgaaga
    6201  gttagcctac aatttactcc acaaaactgt ggattcacag catgtggtag
    6251  gtaaccagct tttgacagtt tctggtggaa tggcttcagg atcacctttt
    6301  acaactattg tcaatacagc ttgtaatatc cttgcaaata tgactgttct
    6351  tgaggaggag ggtgttgagt atacgctagt gtgttatggt gatgatatac
    6401  tagtctccac ctccgatccc atttctgtca atgactatgt tgacaaaatg
    6451  gggcaatatt ttgggttcac tgtcaagctt gatggtgatt atcccaagac
    6501  taaaaataat tttacttttc taaaacggag aactacttac tggaacggca
    6551  ttccagttgg agcgatggaa gttggccttt tgttgcaaca tcttgggtat
    6601  tgtcggtcag tgagtgtttt ccaggaccaa ttaaattcag caagtataga
    6651  gcttgctttg catggcccag aaacgtataa tgtgttgcgt tcgcgcgtca
    6701  attcattcct gaatggaacc gggtttgctt tgatgagtta ccgcagggcc
    6751  gcggcagtgg tgggctctat gctttcctag atttgtggtc acaattggct
    6801  gttattctga attgattcta accaattggg tgtgttccaa tttacttgat
    6851  tggctctggt tttaatttgt ttaatttggc tgattggatg tattgcaaaa
    6901  aaaaaaaaaa aaaaaa