Sequence of DPV Swine pasivirus 1
Swine pasivirus 1, complete genome.
ACC No: JQ316470
Dated: 2012-08-28 | Length: 6916 | CRC: -31078445
ID JQ316470; SV 1; linear; genomic RNA; STD; VRL; 6916 BP. XX AC JQ316470; XX DT 22-JUL-2012 (Rel. 113, Created) DT 28-AUG-2012 (Rel. 113, Last updated, Version 2) XX DE Swine pasivirus 1, complete genome. XX KW . XX OS Swine pasivirus 1 OC Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; OC Picornaviridae; Pasivirus. XX RN [1] RP 1-6916 RX PUBMED; 22787214. RA Sauvage V., Ar Gouilh M., Cheval J., Muth E., Pariente K., Burguiere A., RA Caro V., Manuguerra J.C., Eloit M.; RT "A member of a new Picornaviridae genus is shed in pig feces"; RL J. Virol. 86(18):10036-10046(2012). XX RN [2] RP 1-6916 RA Sauvage V., Ar Gouilh M., Cheval J., Eloit M.; RT ; RL Submitted (22-DEC-2011) to the INSDC. RL Laboratory for Urgent Response to Biological Threats (CIBU), Institut RL Pasteur, 28 rue du Dr Roux, Paris 75724 CEDEX 15, France XX FH Key Location/Qualifiers FH FT source 1. .6916 FT /organism="Swine pasivirus 1" FT /host="Sus scrofa" FT /mol_type="genomic RNA" FT /country="France" FT /isolation_source="porcine stool" FT /collection_date="2010" FT /db_xref="taxon:1210913" FT 5'UTR 1. .378 FT CDS 379. .6780 FT /codon_start=1 FT /product="polyprotein" FT /protein_id="AFN70966.1" FT /translation="MDVVVDTLTKEVSQTLLGDTAESGGGFGGVLSGSATTNAANIVQH FT SAAPTAPANPVLDANDPYEACAYSKETSRETPSKMVLLDIVHFDNTWVWGGNDKLQLPL FT PKCFWKNRSFPAYGTSRYFQFFRGSFHIKIQVNAAAGSAGSFVVVYVPNDHYQSWNNKD FT LILHTMFNWPHVIFNVATMTEADLYIPYINTHNLANTDSSDCGWVVVTPFTHLEVASTT FT TNTLDIAVFGSLVDFQFQGPRPYTDLPSDSQGPKRVARNKKYKYTRNKIDIAEGPGSMN FT IANVLSTTAAQSIALVGERAFIDPSVAGTRVRVRTFRDVTKIKALPLLPFTASHSEYCI FT FDWQASHAPTTKSPIFGRGYKIRELGNLGPLSTAYQFWRGSIIFTLTIFASSFHRGRLR FT IVLFPNGTHSFSQDDANALIFTVCDIGEQSSFDITLPFTHYNWIRECDNSVVVLVNVYV FT ETRLAHNNASSNVIKCALFVRGGEDFEFLAPCGDTVKFHGWGSDMDEADPLDDMEPGHP FT DCLTLESKDGSSGKGPQCAQMAGLTSVENDGTTDNQLNCAAPKFINIHKLTTSIFAKDH FT MHLDYFFGRGWYVMKHNYEGESRAPFYIDVDAPSSMPGAAMNFFSFWAGEVNFHVVNNS FT DDPMAVTHSYSHEASTVGPAEGLGLIIVPPREMISFAAPFYSWSPLRTVLAHQNSAVKR FT TFGILKLVPEAPKGQVIVYASLRTPCFFLVKPFPIQTTAAKMAVYPSKLTSAEEAEELK FT FKLVHEPYEQFFIPHYGDIPSFQRDFINWLGSKEELQNMILQCGDVEQNPGPVLMYDGN FT KKFCVPVCNGYLTFHGSPEQFLVSGNGTLIIYKEVYGMLPYEEAYPEDLSSNWHIEWQC FT VNGKVDSLVKRMANWMLLRYIDLVIFGGTWRRLLAPNTDMKFDSQGVDDMMNSLTGLLN FT SSAMELLGNDVSKSILCCLVRFVAVLVMFFRNPDLINGVALASYLASEFSSVRLVSSQT FT AAFVDALFNGDLYKLSEQFLSMMDIGSDSDYKQLIKETLGSYPPEMNPFESQSLAAFNA FT LSLSARNCTWWIELFQKLHTFVRDLLKPDTSAKFHEWCRKNKMLISNFMYTLNEHLKDC FT ATTCNLRKREFRDKHKWLLSVLNRLTEGFTTYGVQNDITRALLDMRKSMLAVKLGQEYQ FT NTCAREEPLGVLLRGEPGQGKSFMTHLLVRSVCNAMGWKVSESVFSHPTSSEFFDGYAG FT QPIHLIDDFGQNVEEPEYKVLCQCMSSIPFSVPMASLEEKGLPYTSKLVIATTNKSDWS FT SRTLCAPGALKRRFPIVYTVRARRTLTKNGLLDVNAHMSAVRDGAAWEYTTNGYDWQPF FT SVNDLAAEIIKQLEQRRESFQLWNSFISQAPETFEAWCDDMVSLLGPAVPVASVFDYCA FT STGVVPMLKQASESVLKWFDSCVDSMVSFVTRNKKWIAFGALTMSVLGIAISMLKELDS FT QRPYNQTAHKMPVTKLTRGRRVLVSQGPYNEFQHYSKYCVFLHSGSITLHGLAFGGNSF FT LFYTHGLATLERYDNWVLDYNGSMFDLDIETVDELYLNGESMDLCLITCKPLPVTFASI FT VGHLSDGDLGDGVILWRGREGLTCMPIYDLHHYGTVTTNQGDTCTSAIRYRAKTTRGMC FT GGLVLSKISGTYKAVGLHVAGNGVYGVAASLSVCKQLESQGLVTDTKPWPGVRVHQPSK FT SVLKPSPLYGFVEQELHPAVLSPFDNRLKCEVDSVIGRQALKYNSNVFNPGPYYDEVLE FT AFAVDFNGRFGINEMMSAEEVFALSGDEAIELSTSPGLKYTSKGLRKRDLVPGGKACDL FT LLSDVERLMNDPKGTPVYFYCHLKDELRPQEKIEQGLTRCIESSDFDYVFSAKRVFCKL FT FRQLYDSDPIETGFAVGINCIADWKNLLDGMYDYIYDFDLKGYDGSIPRQLMIDACRVL FT SESCSDEELAYNLLHKTVDSQHVVGNQLLTVSGGMASGSPFTTIVNTACNILANMTVLE FT EEGVEYTLVCYGDDILVSTSDPISVNDYVDKMGQYFGFTVKLDGDYPKTKNNFTFLKRR FT TTYWNGIPVGAMEVGLLLQHLGYCRSVSVFQDQLNSASIELALHGPETYNVLRSRVNSF FT LNGTGFALMSYRRAAAVVGSMLS" FT mat_peptide 379. .1137 FT /product="VP0" FT /note="capsid protein; uncleaved precursor of VP2+VP4" FT mat_peptide 1138. .1869 FT /product="VP3" FT /note="capsid protein" FT mat_peptide 1870. .2739 FT /product="VP1" FT /note="capsid protein" FT mat_peptide 2740. .2790 FT /product="2A1" FT mat_peptide 2791. .3126 FT /product="2A2" FT mat_peptide 3127. .3501 FT /product="2B" FT mat_peptide 3502. .4494 FT /product="2C" FT mat_peptide 4495. .4764 FT /product="3A" FT mat_peptide 4765. .4839 FT /product="3B" FT mat_peptide 4840. .5412 FT /product="3C" FT /note="proteinase" FT mat_peptide 5413. .6777 FT /product="3D" FT /note="RNA-dependent RNA polymerase" FT 3'UTR 6781. .6916 XX SQ Sequence 6916 BP; 1709 A; 1331 C; 1648 G; 2228 T; 0 other; jq316470 Length: 6916 28-AUG-2012 Type: N Check: 9166 .. 1 gcttttgacc agtggctctg ggttacttag ccaagtccct ttctcttatt 51 ttcactagtt tatgttgtgt gttgtctgtt ttgttttgtt taaattgtat 101 acaagatcct tcccgccgac acagacctcg acagtctggt gtaggagggt 151 tggtgatatt aatttgcccc aaaagagtga ccgtgatacg tggaaaccat 201 gagtacatgt gtatccgtgg aggatcgccc gggactggat tccatatccc 251 attgccatcc caacaaacgg agggtatacc caccacgtgc gcgtttgcag 301 tgggaatctg caaatttagt catactgcct gatagggtgt gggcctgcac 351 tttggggtac tcaggctgtt catataatat ggatgttgtt gttgatactt 401 taactaagga agtttctcaa acgttgcttg gtgatactgc tgaatctggc 451 ggaggttttg gtggtgttct ttcgggatca gccaccacta atgcagcaaa 501 tattgtccag catagtgctg ctcctacggc tcctgccaat cctgttttgg 551 atgccaatga cccttatgaa gcatgtgcgt actcgaaaga gacctcacgc 601 gaaactccgt ctaaaatggt tttgcttgac attgtgcatt ttgacaacac 651 ctgggtatgg ggcggaaatg ataagttgca attgccatta cccaaatgct 701 tttggaagaa tcggtcgttt cctgcttatg gcacatcacg atattttcag 751 ttctttcgtg gttcgttcca tattaagatt caggtcaatg ctgctgcagg 801 ttctgccggt tcttttgtcg ttgtctatgt gccaaatgac cattatcaga 851 gttggaataa taaggatttg atactccata caatgtttaa ttggccacat 901 gtcattttta atgtggcgac tatgactgag gcagatttgt acattcctta 951 cattaatacc cacaatcttg ctaacactga ttcttctgac tgcgggtggg 1001 tggtagttac accttttacg cacttggaag tagctagcac cactactaat 1051 acactggaca ttgctgtttt cgggtctttg gttgattttc aattccaagg 1101 cccaaggcca tataccgatt tacctagtga ttctcagggg cccaagcgtg 1151 ttgcccgcaa taagaaatat aagtacacac gcaacaaaat tgatattgct 1201 gaagggcctg gatcaatgaa catcgccaat gtacttagca caacagccgc 1251 ccaatcgata gctttggttg gtgaacgtgc ttttattgat cctagtgttg 1301 caggcacgag agtgagagtc cgcacgtttc gtgatgtaac aaaaattaaa 1351 gcattacctt tgctaccgtt cacagcttca catagtgaat attgtatttt 1401 tgattggcag gctagccatg ctccaacaac caagtctccg atttttgggc 1451 gtggctataa gatacgagag cttggtaatt tgggtccatt gtcaacagcc 1501 tatcagtttt ggcgtggttc tattattttc actctcacca tttttgctag 1551 cagttttcac cgtggcaggc ttagaattgt cttgtttcca aatggaaccc 1601 acagttttag tcaggatgat gccaatgcgt tgatatttac tgtctgtgac 1651 attggtgaac aatcctcatt tgatattact ttgccattta ctcattacaa 1701 ttggattagg gaatgtgata attctgtagt tgtcctggtc aacgtgtatg 1751 ttgaaacccg attggctcac aataatgcat cttccaacgt tataaaatgc 1801 gcactttttg tgcgtggcgg cgaggatttt gagttcttgg cgccatgcgg 1851 tgacactgtc aagttccatg gttggggatc ggatatggat gaagctgatc 1901 ctttggatga catggaacca ggacatcctg attgtcttac attggaatct 1951 aaagatggga gtagtggtaa agggccccag tgtgcgcaga tggctggatt 2001 aacaagtgtg gagaatgatg gcacaactga taaccaactt aattgtgcag 2051 cacctaagtt tatcaatatc cataagctga ctacttcaat atttgccaaa 2101 gatcatatgc accttgatta tttctttggt cgtggatggt atgtcatgaa 2151 acataactat gagggcgaga gccgtgcccc tttttatatt gatgtggatg 2201 ctccatcgtc tatgccaggc gctgcaatga atttcttttc tttctgggct 2251 ggggaggtta acttccatgt tgtcaacaat agtgatgacc caatggctgt 2301 cactcatagt tattcgcatg aggctagcac tgttggtccc gctgaaggtc 2351 tagggttgat aattgtgccg cctcgtgaga tgatatcatt tgcagcccct 2401 ttctattcct ggtcgccatt gcggactgtg cttgctcacc aaaatagtgc 2451 agttaagcgc acgtttggca ttttgaagtt agtgcctgag gctccaaaag 2501 gacaggtcat tgtttatgca tcacttagaa ctccatgctt cttcttagtc 2551 aagccatttc ctatacagac aactgcagct aagatggctg tgtatccatc 2601 aaagctgaca tcagctgagg aggcagagga gctaaagttc aaattggtgc 2651 atgagcctta tgagcagttt tttatccccc attatgggga tattcctagt 2701 tttcaaaggg attttattaa ttggctaggc agtaaagaag aattacaaaa 2751 catgatatta caatgtggag atgtggaaca aaatcctggc cctgtcttga 2801 tgtatgatgg taataagaaa ttttgtgtcc cagtctgcaa tggttatttg 2851 acttttcatg gcagtcccga acagttcttg gtgagtggta atggcacact 2901 catcatttat aaagaagttt atggaatgct tccttacgaa gaggcttacc 2951 cagaggatct gtctagcaat tggcatattg aatggcagtg tgtcaatggc 3001 aaggttgatt ctttggttaa gaggatggct aattggatgt tgctgcgtta 3051 tattgatcta gttatctttg gtggcacttg gagaaggttg ctcgccccca 3101 acacagatat gaaatttgac tcccagggag ttgatgacat gatgaattct 3151 ttgactgggc tgcttaattc ttctgctatg gagttgctgg gtaatgatgt 3201 ttcaaaatct atattgtgct gtctggtccg ctttgttgcg gtgcttgtca 3251 tgttttttcg taatcctgac cttattaatg gagttgcact ggcatcttat 3301 ttagcctctg aattttctag tgtaagactt gtgtcgtctc aaacagccgc 3351 ttttgtggat gcccttttta atggtgattt gtataaactc tctgaacaat 3401 tcctttcaat gatggatatt ggttctgatt ctgactataa acaattaatc 3451 aaggagacgt tgggatcgta ccctcctgaa atgaacccat ttgagtcaca 3501 gagtttggct gcatttaatg ctttgtcctt gagtgctcgt aattgtacat 3551 ggtggattga gctcttccag aaattgcaca cgttcgtgcg tgacttattg 3601 aaaccagata cttcggcaaa gtttcatgaa tggtgtagga aaaataagat 3651 gctcatttcc aattttatgt atactcttaa tgagcatttg aaggattgtg 3701 ccaccacctg caatttgcgt aagagggaat ttagagacaa gcataagtgg 3751 ttgttatctg ttcttaatcg ccttactgag ggttttacca cgtatggggt 3801 acagaatgat atcacacgag cattgttgga catgcgtaag agcatgttag 3851 ctgttaagct agggcaagaa tatcagaata cgtgtgctcg tgaggagccc 3901 cttggtgtgc tgctacgtgg cgaacctgga caaggaaaat cctttatgac 3951 acatctgctc gtgcgtagtg tttgcaatgc tatgggctgg aaggtttctg 4001 agagtgtgtt tagccaccct acatcaagtg agttctttga tgggtatgct 4051 gggcaaccga ttcatcttat cgatgatttt gggcagaatg tggaggaacc 4101 tgaatataaa gttttgtgcc agtgtatgtc ttccatacca ttttctgtgc 4151 ctatggcttc gcttgaggaa aagggtttgc cttatacttc aaagttagtt 4201 attgccacga caaataaatc agattggtca tctcgtacct tgtgcgctcc 4251 aggtgctttg aagcgccggt ttcctattgt ttataccgtt cgcgcacgga 4301 ggactttaac caagaatggc cttcttgatg tcaacgcaca tatgagtgca 4351 gtgcgcgatg gagcagcatg ggagtatact accaatggtt atgactggca 4401 acccttttct gttaatgatc ttgctgctga aataattaaa cagttagagc 4451 agcgtaggga atcttttcaa ctctggaatt cttttattag tcaggctcct 4501 gaaacttttg aggcttggtg tgatgatatg gtgtcccttc ttggccctgc 4551 tgttccagtt gcttcagtgt tcgactattg cgctagcact ggtgttgtac 4601 ccatgttaaa gcaagcgtcg gaatctgtcc ttaagtggtt tgattcgtgt 4651 gttgacagca tggtgtcgtt tgttacacgt aacaaaaagt ggattgcttt 4701 tggtgcttta actatgagtg tgttaggtat tgctatatct atgcttaagg 4751 aattggacag ccagcgtccc tataatcaga ccgcccataa gatgcctgtt 4801 actaagctca cgcgtgggcg acgtgtgctt gtttcccaag gcccttataa 4851 tgaattccag cattattcta aatactgtgt ttttctccat tctgggtcta 4901 ttacacttca tggccttgca tttggtggta attctttttt gttttacaca 4951 catggccttg ctactcttga gcgctatgat aattgggtgc ttgactataa 5001 tgggtccatg tttgatttag atattgaaac tgtggatgag ttatacttga 5051 atggagagtc catggacctt tgtcttatca cctgcaagcc tttacctgtt 5101 acttttgcta gcatcgtggg ccatttgtct gatggagacc ttggagatgg 5151 tgtcatcttg tggcgaggtc gagagggcct aacatgtatg ccaatttatg 5201 accttcacca ttatggcact gtcaccacta accaaggaga tacatgcaca 5251 tcagcaatac gctaccgtgc aaaaacgaca cgcggtatgt gtggtggcct 5301 tgttttgtct aaaattagtg gcacttataa agctgttggt ttgcatgttg 5351 ctggaaatgg tgtttatggt gttgcagcaa gtctgagtgt gtgtaagcag 5401 cttgaaagtc aaggactagt caccgacacc aaaccatggc ctggtgtgcg 5451 tgtacatcaa ccttcaaaga gtgttctaaa gccctctcca ctttatggct 5501 ttgtcgaaca ggagctccac ccagcggtgt tgagcccgtt tgacaatcgc 5551 ctgaagtgtg aggttgactc tgtgattggc agacaagctt tgaaatacaa 5601 ttcaaatgtt tttaatcctg gaccttacta tgatgaagtg cttgaggcgt 5651 tcgcagttga ttttaatggc aggtttggta ttaatgaaat gatgtcagct 5701 gaagaggtct ttgccctatc tggtgacgaa gcgatcgagc tttctacctc 5751 acctggttta aagtatacta gtaagggctt gagaaagagg gatctcgtgc 5801 ctggtggcaa ggcatgtgac ctattattga gtgatgttga acgccttatg 5851 aatgatccaa aaggaactcc tgtctacttc tactgtcacc ttaaagatga 5901 gcttaggccc caagagaaga ttgaacaagg ccttacaagg tgcattgaaa 5951 gtagcgattt tgactatgtt tttagtgcca aaagagtctt ttgcaagctg 6001 ttccggcaac tttatgattc tgaccctatt gagactggat ttgctgttgg 6051 tatcaactgt attgctgact ggaagaattt gttggacggc atgtatgatt 6101 acatttatga ttttgatctg aaaggatatg atggttctat accacgtcag 6151 ctcatgatag atgcttgtcg tgtcttgagt gaaagttgta gtgatgaaga 6201 gttagcctac aatttactcc acaaaactgt ggattcacag catgtggtag 6251 gtaaccagct tttgacagtt tctggtggaa tggcttcagg atcacctttt 6301 acaactattg tcaatacagc ttgtaatatc cttgcaaata tgactgttct 6351 tgaggaggag ggtgttgagt atacgctagt gtgttatggt gatgatatac 6401 tagtctccac ctccgatccc atttctgtca atgactatgt tgacaaaatg 6451 gggcaatatt ttgggttcac tgtcaagctt gatggtgatt atcccaagac 6501 taaaaataat tttacttttc taaaacggag aactacttac tggaacggca 6551 ttccagttgg agcgatggaa gttggccttt tgttgcaaca tcttgggtat 6601 tgtcggtcag tgagtgtttt ccaggaccaa ttaaattcag caagtataga 6651 gcttgctttg catggcccag aaacgtataa tgtgttgcgt tcgcgcgtca 6701 attcattcct gaatggaacc gggtttgctt tgatgagtta ccgcagggcc 6751 gcggcagtgg tgggctctat gctttcctag atttgtggtc acaattggct 6801 gttattctga attgattcta accaattggg tgtgttccaa tttacttgat 6851 tggctctggt tttaatttgt ttaatttggc tgattggatg tattgcaaaa 6901 aaaaaaaaaa aaaaaa