Sequence of DPV Citrus tristeza virus

Citrus tristeza virus isolate 06_CT_GRAM_TAR_SwO_01 p20 protein gene, complete cds.

ACC No: JQ422306

Dated: 2012-08-07 | Length: 549 | CRC: -1720705201

                
ID   JQ422306; SV 1; linear; genomic RNA; STD; VRL; 549 BP.
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AC   JQ422306;
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DT   07-AUG-2012 (Rel. 113, Created)
DT   07-AUG-2012 (Rel. 113, Last updated, Version 1)
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DE   Citrus tristeza virus isolate 06_CT_GRAM_TAR_SwO_01 p20 protein gene,
DE   complete cds.
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KW   .
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OS   Citrus tristeza virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC   Closterovirus.
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RN   [1]
RP   1-549
RA   Davino S., Panno S., Davino M., Rubio L.;
RT   "Citrus tristeza virus in Italy: fron an outbreak to a pandemy";
RL   Unpublished.
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RN   [2]
RP   1-549
RA   Davino S., Panno S., Davino M., Rubio L.;
RT   ;
RL   Submitted (18-JAN-2012) to the INSDC.
RL   DEMETRA, University of Palermo, Viale delle Scienze ed. 4, Palermo, Sicily
RL   90128, Italy
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FH   Key             Location/Qualifiers
FH
FT   source          1. .549
FT                   /organism="Citrus tristeza virus"
FT                   /host="Citrus sp."
FT                   /isolate="06_CT_GRAM_TAR_SwO_01"
FT                   /mol_type="genomic RNA"
FT                   /country="Italy"
FT                   /collection_date="2006"
FT                   /db_xref="taxon:12162"
FT   CDS             1. .549
FT                   /codon_start=1
FT                   /product="p20 protein"
FT                   /note="forms inclusion bodies and play a role of
FT                   suppressors of RNA silencing"
FT                   /protein_id="AFP33061.1"
FT                   /translation="MRAYFSVNDYISLLAKVGAVVERLCDPSVTLTEVMDEINDFNSFL
FT                   ALVHSMKSDMNGDHQDGHHEMGEHKSRLLCNIEAKLRILLDIIRRRFTRDKLLCTSATD
FT                   VMGFFVMRYMSSSHTSFESVMRTELKLVVKAVLSDLSRAHKLDFSERAFAAYGILLQKG
FT                   TVATVCGQFDINLVSPSCV"
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SQ   Sequence 549 BP; 134 A; 114 C; 140 G; 161 T; 0 other;

jq422306 Length: 549  07-AUG-2012  Type: N  Check: 3590  ..

       1  atgcgagctt actttagtgt taacgattac ataagccttt tggctaaggt
      51  cggcgcagtt gtggaacgtt tgtgcgatcc cagcgtaact ctcacggaag
     101  tgatggacga aattaatgat tttaactcgt ttctcgcttt ggtacactct
     151  atgaagtcgg acatgaacgg cgatcatcag gatggtcacc atgagatggg
     201  tgaacacaag tctcgattgt tgtgcaatat agaggcgaaa ctgcgaatac
     251  ttctcgatat cataagacgt cggtttactc gcgacaagct gctctgtacc
     301  agcgctacag atgtcatggg cttcttcgtt atgaggtaca tgagttctag
     351  tcacaccagt ttcgagtccg taatgcgaac ggagctgaaa ttagtggtta
     401  aagcggtact gtcggattta tcccgcgcgc ataaactaga ttttagcgag
     451  cgagcctttg cggcttatgg tatcctcttg caaaagggta ctgtagcgac
     501  cgtttgcggt cagtttgaca ttaatttagt ctctccatct tgcgtgtag