Sequence of DPV Grapevine leafroll-associated virus 4

Grapevine leafroll-associated virus 5 isolate CG6 variant 2 capsid protein (CP) gene, complete cds.

ACC No: JQ619086

Dated: 2012-09-03 | Length: 810 | CRC: 1033762603

                
ID   JQ619086; SV 1; linear; genomic RNA; STD; VRL; 810 BP.
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AC   JQ619086;
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DT   03-JUL-2012 (Rel. 113, Created)
DT   03-SEP-2012 (Rel. 114, Last updated, Version 2)
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DE   Grapevine leafroll-associated virus 5 isolate CG6 variant 2 capsid protein
DE   (CP) gene, complete cds.
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KW   .
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OS   Grapevine leafroll-associated virus 5
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC   Ampelovirus.
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RN   [1]
RP   1-810
RX   PUBMED; 22692680.
RA   Esteves F., Teixeira Santos M., Eiras-Dias J.E., Fonseca F.;
RT   "Occurrence of grapevine leafroll-associated virus 5 in Portugal: genetic
RT   variability and population structure in field-grown grapevines";
RL   Arch. Virol. 157(9):1747-1765(2012).
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RN   [2]
RP   1-810
RA   Esteves F., Fonseca F.;
RT   ;
RL   Submitted (03-FEB-2012) to the INSDC.
RL   Universidade do Algarve, Campus de Gambelas 8005-139 Faro, Portugal
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FH   Key             Location/Qualifiers
FH
FT   source          1. .810
FT                   /organism="Grapevine leafroll-associated virus 5"
FT                   /host="Vitis vinifera"
FT                   /isolate="CG6 variant 2"
FT                   /mol_type="genomic RNA"
FT                   /country="Portugal"
FT                   /db_xref="taxon:71032"
FT   gene            1. .810
FT                   /gene="CP"
FT   CDS             1. .810
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="capsid protein"
FT                   /protein_id="AFD98023.1"
FT                   /translation="MSGTVQDVAPTVPTTPPTSETEAERKAREAKEKADLEEIQSLPVI
FT                   QGRTTVDTFEALINSSNGVLDLSRLEFPRLFNVTIPGVVSGKHKVIGARALWNLGKSKG
FT                   ISESDKHQVQFLMQSFQDFITHSTSPKVSSSSNRTITGKYDGKEVTVAHDEIKTALDNS
FT                   IGSFGYENTPRQFGRAFTAAIVQGISSGKLEVNTKICASHGVPPNYYPYSPDCLHVDAR
FT                   LFGYDASLAAELGKMVAINKPSNSNKATHNLYEDTRVAPDIFLGNRR"
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SQ   Sequence 810 BP; 237 A; 185 C; 205 G; 183 T; 0 other;

jq619086 Length: 810  03-SEP-2012  Type: N  Check: 5121  ..

       1  atgtctggaa cagtgcagga cgttgctccg acggtaccga caaccccacc
      51  cactagtgag acggaggctg agcgaaaagc tagagaagct aaggagaagg
     101  ccgacttaga ggagatacaa tcccttcccg tgatacaagg taggacaact
     151  gtggacactt tcgaagcact aatcaatagc tcgaatggtg tactagactt
     201  gtctaggctg gagttcccta ggctgtttaa cgttacaata cctggcgttg
     251  tgtcgggtaa acataaagtg atcggggcga gagctctctg gaacttgggg
     301  aaatcgaaag ggatatctga gagtgacaag catcaagtac agttcttgat
     351  gcaatccttt caggatttca taacgcactc aacgtctccc aaggtgtcca
     401  gctcttccaa tcggacaata actggtaagt atgatggtaa ggaagtgaca
     451  gttgcccacg acgagataaa gacagctcta gacaattcta tagggtcttt
     501  cggttacgaa aacactccta gacaatttgg aagagcattc acggcagcga
     551  tagtgcaagg gatatcctca ggcaagctag aggtgaacac aaagatatgc
     601  gcctctcacg gtgtaccgcc taactactat ccttactcgc cggactgtct
     651  gcatgttgat gcacgactat tcggttatga cgcttcactg gcagctgagt
     701  taggtaagat ggttgctatc aacaaacctt ccaacagcaa caaagctaca
     751  cataatctgt acgaagacac cagggtggct ccggacatct tcctgggtaa
     801  caggagatga