Sequence of DPV Grapevine leafroll-associated virus 4

Grapevine leafroll-associated virus 5 isolate L10 variant 2 capsid protein (CP) gene, complete cds.

ACC No: JQ619115

Dated: 2012-09-03 | Length: 810 | CRC: 473971268

                
ID   JQ619115; SV 1; linear; genomic RNA; STD; VRL; 810 BP.
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AC   JQ619115;
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DT   03-JUL-2012 (Rel. 113, Created)
DT   03-SEP-2012 (Rel. 114, Last updated, Version 2)
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DE   Grapevine leafroll-associated virus 5 isolate L10 variant 2 capsid protein
DE   (CP) gene, complete cds.
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KW   .
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OS   Grapevine leafroll-associated virus 5
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC   Ampelovirus.
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RN   [1]
RP   1-810
RX   PUBMED; 22692680.
RA   Esteves F., Teixeira Santos M., Eiras-Dias J.E., Fonseca F.;
RT   "Occurrence of grapevine leafroll-associated virus 5 in Portugal: genetic
RT   variability and population structure in field-grown grapevines";
RL   Arch. Virol. 157(9):1747-1765(2012).
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RN   [2]
RP   1-810
RA   Esteves F., Fonseca F.;
RT   ;
RL   Submitted (03-FEB-2012) to the INSDC.
RL   Universidade do Algarve, Campus de Gambelas 8005-139 Faro, Portugal
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FH   Key             Location/Qualifiers
FH
FT   source          1. .810
FT                   /organism="Grapevine leafroll-associated virus 5"
FT                   /host="Vitis vinifera"
FT                   /isolate="L10 variant 2"
FT                   /mol_type="genomic RNA"
FT                   /country="Portugal"
FT                   /db_xref="taxon:71032"
FT   gene            1. .810
FT                   /gene="CP"
FT   CDS             1. .810
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="capsid protein"
FT                   /protein_id="AFD98052.1"
FT                   /translation="MSGVTQNVVPTVSGTPPASETEAERKAREDKEKADLEEIQSLPVI
FT                   QGRTTVDTFEALINSSNGVLDLSRLELPRLFNVTIPGVVSGKHKVIGARALWNLGKSKG
FT                   ISESDKHQVQFLMQSFQDFITHSTSPKVSSSSNRTITGKYDGKEVTVAHDEIKTALDNS
FT                   IGSFGYENTPRQFGRAFTAAIVQGISSGKLEVNTKICASHGVPPNYYPYSPDCLHVDAR
FT                   LFGYDASLAAELGKMVAINKPSNSNRATHNLYEDTGVAPDIFLGNRR"
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SQ   Sequence 810 BP; 237 A; 178 C; 209 G; 186 T; 0 other;

jq619115 Length: 810  03-SEP-2012  Type: N  Check: 7603  ..

       1  atgtctggag taacgcagaa cgttgttccg acagtatcgg gaaccccacc
      51  agctagtgag acagaggctg agcggaaggc tagagaagat aaggagaagg
     101  ccgacttgga ggagatacaa tcccttcccg tgatacaagg taggacaacc
     151  gtggacactt tcgaagcact aatcaacagc tcgaatggtg tactagacct
     201  atctaggctg gagctcccta gactgtttaa cgttacaata cctggcgttg
     251  tgtcgggtaa acataaggtg attggggcga gagctctctg gaacttgggg
     301  aaatcaaaag ggatatctga gagtgataag catcaggtac agttcttgat
     351  gcaatccttt caggatttta taacgcactc aacgtctcct aaggtatcca
     401  gctcttccaa tcggacgata actggtaagt atgatggtaa ggaagtgaca
     451  gttgcccatg atgagataaa gacagctcta gacaattcta tagggtcttt
     501  cggttacgaa aacactccta gacaatttgg aagagcattc acggcagcga
     551  tagtgcaggg gatatcctca ggcaaactag aggtgaacac aaagatatgt
     601  gcttctcacg gtgtaccgcc caactactat ccttactcgc cggactgtct
     651  gcacgttgat gcgagactat tcggttatga cgcttcactg gcagctgagt
     701  taggtaagat ggtcgctatc aataaacctt ccaacagcaa cagagctaca
     751  cacaatctgt acgaagacac cggggtagct ccggacatct tcctgggtaa
     801  caggaggtaa