Sequence of DPV Grapevine leafroll-associated virus 4

Grapevine leafroll-associated virus 5 isolate DM variant 1 capsid protein (CP) gene, complete cds.

ACC No: JQ619127

Dated: 2012-09-03 | Length: 810 | CRC: -1588534277

                
ID   JQ619127; SV 1; linear; genomic RNA; STD; VRL; 810 BP.
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AC   JQ619127;
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DT   03-JUL-2012 (Rel. 113, Created)
DT   03-SEP-2012 (Rel. 114, Last updated, Version 2)
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DE   Grapevine leafroll-associated virus 5 isolate DM variant 1 capsid protein
DE   (CP) gene, complete cds.
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KW   .
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OS   Grapevine leafroll-associated virus 5
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC   Ampelovirus.
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RN   [1]
RP   1-810
RX   PUBMED; 22692680.
RA   Esteves F., Teixeira Santos M., Eiras-Dias J.E., Fonseca F.;
RT   "Occurrence of grapevine leafroll-associated virus 5 in Portugal: genetic
RT   variability and population structure in field-grown grapevines";
RL   Arch. Virol. 157(9):1747-1765(2012).
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RN   [2]
RP   1-810
RA   Esteves F., Fonseca F.;
RT   ;
RL   Submitted (03-FEB-2012) to the INSDC.
RL   Universidade do Algarve, Campus de Gambelas 8005-139 Faro, Portugal
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FH   Key             Location/Qualifiers
FH
FT   source          1. .810
FT                   /organism="Grapevine leafroll-associated virus 5"
FT                   /host="Vitis vinifera cv D. Maria"
FT                   /isolate="DM variant 1"
FT                   /mol_type="genomic RNA"
FT                   /country="Portugal"
FT                   /db_xref="taxon:71032"
FT   gene            1. .810
FT                   /gene="CP"
FT   CDS             1. .810
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="capsid protein"
FT                   /protein_id="AFD98064.1"
FT                   /translation="MSGSVQNVVPATPSTPPISETEAERKAREDKEKADLEEIQSLPVI
FT                   QGRTTVDTFEALINSSNGVLDLSRLELPRLFNVTIPGVVSGKHKVIGARALWNLGKSKG
FT                   ISESDKHQVQFLMQSFQDFITHSTSPKVSSSSNRTITGKYDGKEVTVAHDEIKTALDNS
FT                   IGSFGCENTPRQFGRAFTAAIVQGISSGKLEVNTRICASHGVPPNYYPYSPDCLHVDAR
FT                   LFGYDASLAAELGKMVAINKPSNSNRATHNLYEDTRVAPDIFLGNRR"
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SQ   Sequence 810 BP; 230 A; 175 C; 215 G; 190 T; 0 other;

jq619127 Length: 810  03-SEP-2012  Type: N  Check: 910  ..

       1  atgtctgggt cagtgcagaa tgttgttccg gcaacgccgt caaccccacc
      51  aattagtgag acagaggctg agcggaaggc tagagaagat aaggagaagg
     101  ccgacttgga ggagatacaa tctcttcccg tgatacaagg taggacaacc
     151  gtggacactt ttgaagcgct aatcaatagc tcgaacggtg tactagactt
     201  gtctaggctg gagttaccta ggttgtttaa cgtcacgata cctggcgttg
     251  tgtcgggtaa acacaaagtg attggggcga gagctctctg gaacttgggg
     301  aaatcgaaag ggatatctga gagtgataag catcaagtac agttcttgat
     351  gcaatccttt caggatttca taacgcactc aacgtctcct aaggtatcca
     401  gttcttccaa tcggacaata actggtaagt acgatggtaa ggaggtgaca
     451  gttgcccatg atgagataaa gacagctctg gacaattcta tagggtcttt
     501  cggttgcgaa aacactccta gacaatttgg aagagcattc acggcagcga
     551  tagtgcaagg gatatcctca ggcaaactgg aggtgaacac gaggatatgc
     601  gcttctcacg gtgtaccgcc taactactat ccctactcgc cggattgtct
     651  gcatgttgat gcaagactgt tcggttatga cgcttcactg gcagctgagt
     701  taggcaagat ggttgctatc aacaaacctt ccaacagcaa cagagctaca
     751  cacaatctgt acgaagacac cagggtggct ccggacatat tcctgggtaa
     801  caggaggtaa