Sequence of DPV Tomato yellow leaf curl virus
Tomato yellow leaf curl virus isolate Cherry-Fadisheh, complete genome.
ACC No: JQ928347
Dated: 2012-10-03 | Length: 2780 | CRC: 1270723870
ID JQ928347; SV 1; circular; genomic DNA; STD; VRL; 2780 BP.
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AC JQ928347;
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DT 03-OCT-2012 (Rel. 114, Created)
DT 03-OCT-2012 (Rel. 114, Last updated, Version 1)
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DE Tomato yellow leaf curl virus isolate Cherry-Fadisheh, complete genome.
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KW .
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OS Tomato yellow leaf curl virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2780
RA Gharouni Kardani S., Jafarpour B., Mehrvar M., Heydarnejad J., Tarighi S.,
RA Zaki Aghl M.;
RT "Genetic diversity of TYLCV in Iran";
RL Unpublished.
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RN [2]
RP 1-2780
RA Gharouni Kardani S., Jafarpour B., Mehrvar M., Heydarnejad J., Tarighi S.,
RA Zaki Aghl M.;
RT ;
RL Submitted (11-APR-2012) to the INSDC.
RL Plant Protection, Ferdowsi University, Azadi Square, Mashhad, Khorasan
RL Razavi 9177948978, Iran
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FH Key Location/Qualifiers
FH
FT source 1. .2780
FT /organism="Tomato yellow leaf curl virus"
FT /host="Solanum lycopersicum"
FT /isolate="Cherry-Fadisheh"
FT /mol_type="genomic DNA"
FT /country="Iran:Neyshabur, Fadisheh, Khorasan Razavi
FT province"
FT /collected_by="Sara Gharouni Kardani"
FT /collection_date="22-Dec-2009"
FT /clone="Cherry20"
FT /db_xref="taxon:10832"
FT gene 147. .497
FT /gene="V2"
FT CDS 147. .497
FT /codon_start=1
FT /gene="V2"
FT /product="precoat protein"
FT /protein_id="AFT83014.1"
FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLVRDL
FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV
FT SKAQNIQNVSEP"
FT gene 307. .1083
FT /gene="V1"
FT CDS 307. .1083
FT /codon_start=1
FT /gene="V1"
FT /product="coat protein"
FT /protein_id="AFT83015.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW
FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH
FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDN
FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYE
FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN"
FT gene complement(1080. .1484)
FT /gene="C3"
FT CDS complement(1080. .1484)
FT /codon_start=1
FT /gene="C3"
FT /product="replication enhancer protein"
FT /protein_id="AFT83016.1"
FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI
FT ISIQIRFNHNIRKVMGIHKCFLNFRIWTTLQPQTGRFLRVFSYEVLKYLDSLGVISINN
FT VIRAVDHVLYDVLENTINVTETHDIKYKFY"
FT gene complement(1225. .1632)
FT /gene="C2"
FT CDS complement(1225. .1632)
FT /codon_start=1
FT /gene="C2"
FT /product="transcription activator protein"
FT /protein_id="AFT83017.1"
FT /translation="MQPSSPSTSHCSQVSIKVKHKISKKKTIRRKRVDLDCGCSYYLHL
FT NCNNHGFTHRGTHHCSSSREWRFYLGDKQSPLFQDNRTQPEAISNEPRHHFHSDKIQPQ
FT HQEGNGDSQMFSQLPNLDDITASDWSFLKSI"
FT gene complement(1541. .2614)
FT /gene="C1"
FT CDS complement(1541. .2614)
FT /codon_start=1
FT /gene="C1"
FT /product="replication-associated protein"
FT /protein_id="AFT83018.1"
FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLLALNTPTNKKFIRVA
FT HELHEDGSPHLHVLIQFEGKYQCKNQRFFDLSSPSRSAHFHPNIQAAKSSTDVKTYVEK
FT DGDFIDFGIFQIDGRSARGGQQSANDAYAEALNSGRKSEALNILKEKAPKDYILQFHNL
FT SSNLDRIFQEPPAPYISPFLSSSFNQVPDELEVWVSENVMSSAARPWRPNSIIIEGDSR
FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS
FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKTWALKNATFVTLYEPLFA
FT SINQGQTQDIQEENNKA"
FT gene complement(2170. .2478)
FT /gene="C4"
FT CDS complement(2170. .2478)
FT /codon_start=1
FT /gene="C4"
FT /product="C4 protein"
FT /protein_id="AFT83019.1"
FT /translation="MNYMKMGLLISMFSSSSKESTSVRTNDSSIYPLQAGQHISIRTFR
FT QLRAQQMSRPTWRKTETSLILEFSKSMADQLEEVSNLPTTHMPKHSIQAENPRPSIY"
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SQ Sequence 2780 BP; 771 A; 528 C; 611 G; 870 T; 0 other;
jq928347 Length: 2780 03-OCT-2012 Type: N Check: 6402 ..
1 accggatggc cgcgctcttt tttttatgtg gtccccacga gtgttccgca
51 gaagtcactg tcaaccaatc aaattgcatc ctcaaacgtt agataagtat
101 tgatttgtct atatatactt ggtccccaag tattttgtct tgcaatatgt
151 gggacccact tctaaatgaa tttcctgaat ctgttcacgg atttcgttgt
201 atgttagcta ttaaatattt gcagtccgtt gaggaaactt acgagcccaa
251 tacattgggc cacgatttag ttagggatct tatatctgtt gtaagggccc
301 gtgactatgt cgaagcgacc aggcgatata atcatttcca cgcccgtctc
351 gaaggttcgc cgaaggctga acttcgacag cccatacagc agccgtgctg
401 ctgtccccat tgtccaaggc acaaacaagc gacgatcatg gacgtacagg
451 cccatgtatc gaaagcccag aatatacaga atgtatcgga gccctgatgt
501 tccccgtgga tgtgaaggcc catgtaaagt tcagtcttat gagcaacggg
551 atgatattaa gcatactggt attgttcgtt gtgttagtga tgttactcgt
601 ggatctggaa ttactcacag agtgggtaag aggttctgtg ttaaatcgat
651 atatttttta ggtaaagtct ggatggatga aaatatcaag aagcagaatc
701 acactaatca ggtcatgttc ttcttagtcc gtgatagaag gccctatgga
751 aacagcccaa tggattttgg acaggttttt aatatgttcg ataatgagcc
801 cagtaccgca accgtgaaga atgatttgcg ggataggttt caagtgatga
851 ggaaatttca tgctacagtt attggtgggc cctctggaat gaaggaacag
901 gcattagtta agagattttt taaaattaac agtcatgtaa cttataatca
951 tcaggaggca gccaagtacg agaaccatac tgaaaatgcc ttgttattgt
1001 acatggcatg tacgcatgcc tctaatccag tgtatgcaac tatgaaaata
1051 cgcatctatt tctatgattc aatatcaaat taataaaatt tatattttat
1101 atcatgagtt tctgttacat ttattgtgtt ttcaagtaca tcatataata
1151 catgatcaac tgctctgatt acattgttaa tggaaattac accaagacta
1201 tctaaatatt taagaacttc atagctaaat actcttaaga aacgaccagt
1251 ctgaggctgt aatgtcgtcc aaattcggaa gttgagaaaa catttgtgaa
1301 tccccattac cttcctgatg ttgtggttga atcttatctg aatggaaatg
1351 atgtcgtggt tcattagaaa tggcctctgg ctgtgttctg ttatcttgaa
1401 atagagggga ttgtttatct cccagataaa aacgccattc tctgcttgag
1451 gagcagtgat gagttcccct gtgcgtgaat ccatgattat tgcagttgag
1501 gtggaggtag tatgagcagc cacagtctag gtctacacgc ttacgcctta
1551 ttgttttctt cttggatatc ttgtgtttga ccttgattga tacttgcgaa
1601 cagtggctcg tagagggtga cgaaggttgc attcttgaga gcccaagttt
1651 tcaaggatat gtttttttct tcgtctagat attccctata tgaggaggta
1701 ggtcctggat tgcagaggaa gatagtggga attccccctt taatttgaat
1751 gggctttccg tactttgtgt tgctttgcca gtccctctgg gcccccatga
1801 attccttgaa gtgctttaaa tagtgcgggt ctacgtcatc aatgacgttg
1851 taccacgcat cattactgta cacctttgga cttaggtcta gatgtccgca
1901 taaataatta tgtgggccta gagacctggc ccacattgtt ttgcctgttc
1951 tgctatcacc ctcgatgata atactattag gtctccatgg ccgcgcagcg
2001 gaagacatga cgttctctga cacccatact tcaagttcat ctggaacttg
2051 attaaaagat gaagataaaa agggagaaat ataaggagcc ggaggctctt
2101 gaaaaatcct atctaaattt gaacttaaat tatgaaattg taaaatataa
2151 tcctttgggg ccttctcttt caatatattg agggcctcgg attttctgcc
2201 tgaattgagt gcttcggcat atgcgtcgtt ggcagattgc tgacctcctc
2251 tagctgatct gccatcgatt tggaaaattc caaaatcaat gaagtctccg
2301 tctttctcca cgtaggtctt gacatctgtt gagctcttag ctgcctgaat
2351 gttcggatgg aaatgtgctg acctgcttgg agaggataaa tcgaagaatc
2401 gttggttctt acactggtac tttccttcga actggatgag aacatggaga
2451 tgaggagacc catcttcatg tagttcatgc gcaactcgta tgaatttctt
2501 gttagttggt gtatttaggg caagtaattg ggaaagtgct tcttctttag
2551 agagagaaca attaggataa gtcaggaaat aatttttggc atatatttta
2601 aatagacgag gcatggtgaa atgaatcggt gtccctcaaa actctatggc
2651 aaccggtgta tccggtgtct tacttatacc tagacaccca atggctattt
2701 ggtaatttcg taaaagtaaa tgtaattcaa aattcaaaat tcaaaaatca
2751 aatcattaaa gcggccatcc gtataatatt