Sequence of DPV Le Blanc nodavirus
Le Blanc nodavirus strain JU1498 capsid protein and delta protein genes, complete cds.
ACC No: JQ943580
Dated: 2012-10-19 | Length: 3001 | CRC: -888740755
ID JQ943580; SV 1; linear; genomic RNA; STD; VRL; 3001 BP. XX AC JQ943580; XX DT 19-OCT-2012 (Rel. 114, Created) DT 19-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE Le Blanc nodavirus strain JU1498 capsid protein and delta protein genes, DE complete cds. XX KW . XX OS Le Blanc nodavirus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Nodaviridae; OC unclassified Nodaviridae. XX RN [1] RP 1-3001 RX PUBMED; 23043172. RA Franz C.J., Zhao G., Felix M.A., Wang D.; RT "Complete genome sequence of Le Blanc virus, a third Caenorhabditis RT nematode-infecting virus"; RL J. Virol. 86(21):11940-11940(2012). XX RN [2] RP 1-3001 RA Franz C.J., Renshaw H.A., Wu G., Zhao G., Felix M.-A., Wang D.; RT ; RL Submitted (16-APR-2012) to the INSDC. RL Molecular Microbiology, Washington University, 4920 Parkview, St. Louis, MO RL 63110, USA XX FH Key Location/Qualifiers FH FT source 1. .3001 FT /organism="Le Blanc nodavirus" FT /segment="RNA2" FT /host="Caenorhabditis briggsae" FT /strain="JU1498" FT /mol_type="genomic RNA" FT /country="France" FT /collected_by="Marie-Anne Felix" FT /collection_date="18-Aug-2008" FT /db_xref="taxon:1241918" FT CDS 300. .1349 FT /codon_start=1 FT /product="capsid protein" FT /protein_id="AFU90717.1" FT /translation="MTTSNSIILKGCDRIVTVVDASTLSAGDPLVKLMITPDIAYRLGA FT TAKTFQRIKYKTMRFRVNAQCATTTAGGYVAGFVKDAGDELPTGDRAVPYLMSNTGSFT FT QPWWKSTVHNVKLPQKMFYTEKPAVGSDAVREYSPGTFYVVVDSKPSQVCPVTVDLEWA FT VELHDATYREVEAVTTISGISADYSLNVFGIPATSVLAGRILITPKGSNPRPLTIERFR FT TFFGFAPDLMFCVRLPRPEDVVLTGDNVYQGVKATHFMAYTADGLLDFHLAAFNDVTQS FT IIPVRPSDWRVYSVDGSSSTPFTSAIYENTTWSSDDKFVPVTISDVPIPGAVFRFLYPS FT VGYSLPSSN" FT CDS 1469. .2665 FT /codon_start=1 FT /product="delta protein" FT /protein_id="AFU90718.1" FT /translation="MIASLQAAEIHLGRPTASYEQWFNETIGTTLTKLADNSDRMIELV FT EKLSSCVVDEQLAITTRETLKVEVENKVPVTVENTPRVHVDNEVDVTVKNEALRVRNYM FT LKLEEIEFPEPLFVLGAEKDIEGHPKKFECEVINEPTVKLAGGTSIDTNVVNTVDCNIV FT NEPIVRLADDSHVDAVVTGTVNCNVLNEPTVHLAANSRVDAFVGNTVFTSVVALPEVHV FT GSLPGVDVIALPPVSLSANPLPVTVTGGTLTIDQPVSVIAEVPLEVYMSNEVAVKVIEV FT EGTVDVAVKNRFSDPIPVCQLTRTLVPAPPATNNYSGQGVFRELSQSHPLPMYQVGPDN FT GISHTMGPQNTTFVRDVSEDGYVWSDCQNSRLPDVYKHEFEGEDRRRTVLAVVAEAHS" XX SQ Sequence 3001 BP; 754 A; 794 C; 739 G; 714 T; 0 other; jq943580 Length: 3001 19-OCT-2012 Type: N Check: 9754 .. 1 atcgaaccaa cagcatcgca atccaggacg ggactcgcac cctctctggt 51 ctatggcctc aatcgtaaag cgctaaagga cccacgtccc agctttatga 101 gcgtggcgca ctcctcccat acggatttat ctcgggagac aggctatggg 151 gttcgcaccc ccatagttta gccctgaccg ctaacaaaca ccgcacacat 201 aaatcaaacc ggagaggaaa accggtgaaa caacctcatt ctcgccgttc 251 taacaggaat ggaaataccg caccagtagc ccgtgcaaac ccgctacgta 301 tgaccacgtc gaattcgatc attctgaaag gatgcgaccg aattgtgact 351 gtggtagacg cttcgactct ttcagctggc gacccgctcg ttaagctgat 401 gattactccc gatattgctt accgtctagg agcgactgca aagacgttcc 451 aacggatcaa gtacaagacc atgagattca gagtcaacgc tcaatgtgcc 501 actacgactg ccggaggtta cgttgccgga tttgtgaagg acgctggaga 551 cgaactgcct actggagaca gagcagtgcc gtatctcatg tccaacacag 601 gttcatttac ccaaccctgg tggaaatcga cggtccacaa cgttaagtta 651 ccacagaaga tgttctacac ggagaaacct gccgtaggca gtgacgctgt 701 acgtgaatat tcccctggaa ccttctatgt tgttgtggac agcaaaccta 751 gtcaagtttg tcccgttaca gttgatctgg aatgggcagt cgagctccat 801 gacgcaacct accgtgaagt agaagcagtc accaccattt ccggaatctc 851 agctgattac tctctgaacg ttttcggaat tcctgccacg tccgtgctcg 901 caggccgtat tcttattaca ccaaagggta gtaaccctcg tcctttgacc 951 atagaacgat tcagaacatt cttcggcttt gcgcctgatt tgatgttctg 1001 tgtccgacta ccaagacctg aggatgttgt cctcacaggg gacaatgtct 1051 accaaggagt caaagcaaca cactttatgg cctacacagc agacggactc 1101 ctcgacttcc atctcgcagc tttcaatgac gtcacccaat caatcatccc 1151 tgtaagaccc tcagactgga gggtgtattc ggttgatgga tctagttcca 1201 cgccattcac ctcggccatc tatgagaaca ccacttggag ttctgacgac 1251 aagttcgtcc cagttaccat ttcggatgtg ccaattccag gagccgtgtt 1301 ccggttcttg tacccatctg taggttattc cctgccatcg tcaaactagg 1351 atggggcaac gtcgtgcagc tgacggagcc caatcttttg tttcgcacat 1401 ggtttgagaa ccaacagctg gtcctaggac ttccatccga ggattatgct 1451 acttggtttg ccagggccat gattgcctca ctgcaagctg ctgagatcca 1501 cctcggccga ccaaccgcta gttatgagca gtggtttaac gaaacgattg 1551 gaaccacttt gaccaaactg gccgataact cggacagaat gatcgaactg 1601 gttgagaagc tctcttcatg tgtggtcgac gaacagttgg ccatcactac 1651 aagggagact ctcaaagtcg aagtggagaa taaagtgcct gtaacagtcg 1701 aaaacacacc gcgtgtccac gtagacaacg aagtcgatgt aacagtcaag 1751 aacgaagctt taagagtacg gaattacatg ctgaaacttg aggagatcga 1801 gtttccagaa ccgctgttcg tactcggagc cgagaaggat attgaaggac 1851 acccaaagaa atttgagtgc gaggtcatca acgaaccaac tgttaaacta 1901 gcaggaggca cctcaataga caccaacgtt gttaacactg tcgattgtaa 1951 catcgtcaac gagccgatcg tcagattggc tgacgattcc cacgttgacg 2001 cggtcgtgac cggcactgtt aactgtaacg ttctcaatga accgacggtc 2051 catttggccg ccaactcgcg tgttgatgct ttcgtcggca acacagtttt 2101 cacttctgtg gtggctctac ctgaggttca tgtggggtcc ctaccaggtg 2151 ttgacgtgat agcattacca ccggtgtctc tttctgctaa tccgctcccc 2201 gtcaccgtta caggaggtac gctaacaata gaccaaccag tgtctgtaat 2251 cgctgaggtc ccattggagg tgtacatgag taatgaggtc gccgtaaagg 2301 tgattgaggt tgaggggaca gtcgatgtcg cagtcaagaa taggttcagc 2351 gaccctattc cagtctgtca gctcacacgt actctagttc cagcaccccc 2401 agccacgaat aattattctg ggcagggagt gttccgtgag ctctcccagt 2451 cgcatccgtt gccgatgtat caggtaggtc ctgacaacgg catttcccac 2501 actatgggtc cgcagaacac tacgttcgtg cgcgacgttt cggaagacgg 2551 atatgtctgg tcagactgcc agaatagcag gctacccgat gtctataagc 2601 atgagtttga aggcgaagac cgcaggagaa ctgtcctcgc ggtagtcgcc 2651 gaggctcatt cttaggtagc atgttgttcg actagttgat actccttctg 2701 gtcagttatc gtcctacacg tgggtaggac gcaccatcta ggtggtgatc 2751 ccggttggca accaaaatgg ataacgggta ttcaaacaca agaattaaac 2801 aaggtgtcgg ccagtcctgg tcgtaatgta gtaggtccgc caaacctgcc 2851 acactggaca cgcctgctag cttgctagcg aacccggtga ctccgaggta 2901 ttactggtag cctctgttcg gcattaaatg tcagcgttgt ggggattcaa 2951 cgacaaatgg tgggtttcgt caaccctcca ggccaatccc tcttgggccg 3001 c