Sequence of DPV Le Blanc nodavirus
Le Blanc nodavirus strain JU1498 capsid protein and delta protein genes, complete cds.
ACC No: JQ943580
Dated: 2012-10-19 | Length: 3001 | CRC: -888740755
ID JQ943580; SV 1; linear; genomic RNA; STD; VRL; 3001 BP.
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AC JQ943580;
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DT 19-OCT-2012 (Rel. 114, Created)
DT 19-OCT-2012 (Rel. 114, Last updated, Version 1)
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DE Le Blanc nodavirus strain JU1498 capsid protein and delta protein genes,
DE complete cds.
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KW .
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OS Le Blanc nodavirus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Nodaviridae;
OC unclassified Nodaviridae.
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RN [1]
RP 1-3001
RX PUBMED; 23043172.
RA Franz C.J., Zhao G., Felix M.A., Wang D.;
RT "Complete genome sequence of Le Blanc virus, a third Caenorhabditis
RT nematode-infecting virus";
RL J. Virol. 86(21):11940-11940(2012).
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RN [2]
RP 1-3001
RA Franz C.J., Renshaw H.A., Wu G., Zhao G., Felix M.-A., Wang D.;
RT ;
RL Submitted (16-APR-2012) to the INSDC.
RL Molecular Microbiology, Washington University, 4920 Parkview, St. Louis, MO
RL 63110, USA
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FH Key Location/Qualifiers
FH
FT source 1. .3001
FT /organism="Le Blanc nodavirus"
FT /segment="RNA2"
FT /host="Caenorhabditis briggsae"
FT /strain="JU1498"
FT /mol_type="genomic RNA"
FT /country="France"
FT /collected_by="Marie-Anne Felix"
FT /collection_date="18-Aug-2008"
FT /db_xref="taxon:1241918"
FT CDS 300. .1349
FT /codon_start=1
FT /product="capsid protein"
FT /protein_id="AFU90717.1"
FT /translation="MTTSNSIILKGCDRIVTVVDASTLSAGDPLVKLMITPDIAYRLGA
FT TAKTFQRIKYKTMRFRVNAQCATTTAGGYVAGFVKDAGDELPTGDRAVPYLMSNTGSFT
FT QPWWKSTVHNVKLPQKMFYTEKPAVGSDAVREYSPGTFYVVVDSKPSQVCPVTVDLEWA
FT VELHDATYREVEAVTTISGISADYSLNVFGIPATSVLAGRILITPKGSNPRPLTIERFR
FT TFFGFAPDLMFCVRLPRPEDVVLTGDNVYQGVKATHFMAYTADGLLDFHLAAFNDVTQS
FT IIPVRPSDWRVYSVDGSSSTPFTSAIYENTTWSSDDKFVPVTISDVPIPGAVFRFLYPS
FT VGYSLPSSN"
FT CDS 1469. .2665
FT /codon_start=1
FT /product="delta protein"
FT /protein_id="AFU90718.1"
FT /translation="MIASLQAAEIHLGRPTASYEQWFNETIGTTLTKLADNSDRMIELV
FT EKLSSCVVDEQLAITTRETLKVEVENKVPVTVENTPRVHVDNEVDVTVKNEALRVRNYM
FT LKLEEIEFPEPLFVLGAEKDIEGHPKKFECEVINEPTVKLAGGTSIDTNVVNTVDCNIV
FT NEPIVRLADDSHVDAVVTGTVNCNVLNEPTVHLAANSRVDAFVGNTVFTSVVALPEVHV
FT GSLPGVDVIALPPVSLSANPLPVTVTGGTLTIDQPVSVIAEVPLEVYMSNEVAVKVIEV
FT EGTVDVAVKNRFSDPIPVCQLTRTLVPAPPATNNYSGQGVFRELSQSHPLPMYQVGPDN
FT GISHTMGPQNTTFVRDVSEDGYVWSDCQNSRLPDVYKHEFEGEDRRRTVLAVVAEAHS"
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SQ Sequence 3001 BP; 754 A; 794 C; 739 G; 714 T; 0 other;
jq943580 Length: 3001 19-OCT-2012 Type: N Check: 9754 ..
1 atcgaaccaa cagcatcgca atccaggacg ggactcgcac cctctctggt
51 ctatggcctc aatcgtaaag cgctaaagga cccacgtccc agctttatga
101 gcgtggcgca ctcctcccat acggatttat ctcgggagac aggctatggg
151 gttcgcaccc ccatagttta gccctgaccg ctaacaaaca ccgcacacat
201 aaatcaaacc ggagaggaaa accggtgaaa caacctcatt ctcgccgttc
251 taacaggaat ggaaataccg caccagtagc ccgtgcaaac ccgctacgta
301 tgaccacgtc gaattcgatc attctgaaag gatgcgaccg aattgtgact
351 gtggtagacg cttcgactct ttcagctggc gacccgctcg ttaagctgat
401 gattactccc gatattgctt accgtctagg agcgactgca aagacgttcc
451 aacggatcaa gtacaagacc atgagattca gagtcaacgc tcaatgtgcc
501 actacgactg ccggaggtta cgttgccgga tttgtgaagg acgctggaga
551 cgaactgcct actggagaca gagcagtgcc gtatctcatg tccaacacag
601 gttcatttac ccaaccctgg tggaaatcga cggtccacaa cgttaagtta
651 ccacagaaga tgttctacac ggagaaacct gccgtaggca gtgacgctgt
701 acgtgaatat tcccctggaa ccttctatgt tgttgtggac agcaaaccta
751 gtcaagtttg tcccgttaca gttgatctgg aatgggcagt cgagctccat
801 gacgcaacct accgtgaagt agaagcagtc accaccattt ccggaatctc
851 agctgattac tctctgaacg ttttcggaat tcctgccacg tccgtgctcg
901 caggccgtat tcttattaca ccaaagggta gtaaccctcg tcctttgacc
951 atagaacgat tcagaacatt cttcggcttt gcgcctgatt tgatgttctg
1001 tgtccgacta ccaagacctg aggatgttgt cctcacaggg gacaatgtct
1051 accaaggagt caaagcaaca cactttatgg cctacacagc agacggactc
1101 ctcgacttcc atctcgcagc tttcaatgac gtcacccaat caatcatccc
1151 tgtaagaccc tcagactgga gggtgtattc ggttgatgga tctagttcca
1201 cgccattcac ctcggccatc tatgagaaca ccacttggag ttctgacgac
1251 aagttcgtcc cagttaccat ttcggatgtg ccaattccag gagccgtgtt
1301 ccggttcttg tacccatctg taggttattc cctgccatcg tcaaactagg
1351 atggggcaac gtcgtgcagc tgacggagcc caatcttttg tttcgcacat
1401 ggtttgagaa ccaacagctg gtcctaggac ttccatccga ggattatgct
1451 acttggtttg ccagggccat gattgcctca ctgcaagctg ctgagatcca
1501 cctcggccga ccaaccgcta gttatgagca gtggtttaac gaaacgattg
1551 gaaccacttt gaccaaactg gccgataact cggacagaat gatcgaactg
1601 gttgagaagc tctcttcatg tgtggtcgac gaacagttgg ccatcactac
1651 aagggagact ctcaaagtcg aagtggagaa taaagtgcct gtaacagtcg
1701 aaaacacacc gcgtgtccac gtagacaacg aagtcgatgt aacagtcaag
1751 aacgaagctt taagagtacg gaattacatg ctgaaacttg aggagatcga
1801 gtttccagaa ccgctgttcg tactcggagc cgagaaggat attgaaggac
1851 acccaaagaa atttgagtgc gaggtcatca acgaaccaac tgttaaacta
1901 gcaggaggca cctcaataga caccaacgtt gttaacactg tcgattgtaa
1951 catcgtcaac gagccgatcg tcagattggc tgacgattcc cacgttgacg
2001 cggtcgtgac cggcactgtt aactgtaacg ttctcaatga accgacggtc
2051 catttggccg ccaactcgcg tgttgatgct ttcgtcggca acacagtttt
2101 cacttctgtg gtggctctac ctgaggttca tgtggggtcc ctaccaggtg
2151 ttgacgtgat agcattacca ccggtgtctc tttctgctaa tccgctcccc
2201 gtcaccgtta caggaggtac gctaacaata gaccaaccag tgtctgtaat
2251 cgctgaggtc ccattggagg tgtacatgag taatgaggtc gccgtaaagg
2301 tgattgaggt tgaggggaca gtcgatgtcg cagtcaagaa taggttcagc
2351 gaccctattc cagtctgtca gctcacacgt actctagttc cagcaccccc
2401 agccacgaat aattattctg ggcagggagt gttccgtgag ctctcccagt
2451 cgcatccgtt gccgatgtat caggtaggtc ctgacaacgg catttcccac
2501 actatgggtc cgcagaacac tacgttcgtg cgcgacgttt cggaagacgg
2551 atatgtctgg tcagactgcc agaatagcag gctacccgat gtctataagc
2601 atgagtttga aggcgaagac cgcaggagaa ctgtcctcgc ggtagtcgcc
2651 gaggctcatt cttaggtagc atgttgttcg actagttgat actccttctg
2701 gtcagttatc gtcctacacg tgggtaggac gcaccatcta ggtggtgatc
2751 ccggttggca accaaaatgg ataacgggta ttcaaacaca agaattaaac
2801 aaggtgtcgg ccagtcctgg tcgtaatgta gtaggtccgc caaacctgcc
2851 acactggaca cgcctgctag cttgctagcg aacccggtga ctccgaggta
2901 ttactggtag cctctgttcg gcattaaatg tcagcgttgt ggggattcaa
2951 cgacaaatgg tgggtttcgt caaccctcca ggccaatccc tcttgggccg
3001 c